Wall clock time and date at job start Fri Apr 10 2020 18:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00127 * 2 1 4 4 C 1.52997 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47047 * 65.00285 * 4 3 2 6 6 C 1.46825 * 124.33317 * 269.93502 * 5 4 3 7 7 C 1.54479 * 105.44463 * 196.99402 * 6 5 4 8 8 H 1.09004 * 110.96553 * 92.76780 * 7 6 5 9 9 C 1.50701 * 110.97196 * 216.49107 * 7 6 5 10 10 O 1.21279 * 119.99862 * 356.92123 * 9 7 6 11 11 N 1.34773 * 119.99975 * 176.91284 * 9 7 6 12 12 C 1.47583 * 134.49317 * 180.02562 * 11 9 7 13 13 C 1.53945 * 86.11541 * 204.63646 * 12 11 9 14 14 O 1.42903 * 113.74155 * 90.74233 * 13 12 11 15 15 C 1.50704 * 113.74101 * 221.93630 * 13 12 11 16 16 H 1.07996 * 119.99852 * 358.07848 * 15 13 12 17 17 C 1.37883 * 119.99641 * 178.07674 * 15 13 12 18 18 N 1.31510 * 120.00287 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 119.99749 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47063 * 90.00014 * 19 17 15 21 21 H 1.48503 * 109.47292 * 210.00273 * 19 17 15 22 22 H 1.48506 * 109.47342 * 330.00355 * 19 17 15 23 23 C 1.47935 * 134.50198 * 0.02562 * 11 9 7 24 24 C 1.54626 * 101.80138 * 334.63259 * 7 6 5 25 25 C 1.34423 * 124.34995 * 89.97510 * 5 4 3 26 26 O 1.21274 * 124.94166 * 359.55489 * 25 5 4 27 27 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46807 * 299.99730 * 1 2 3 29 29 H 1.09003 * 109.47466 * 59.99103 * 1 2 3 30 30 H 1.09005 * 109.47037 * 60.00618 * 3 2 1 31 31 H 1.09002 * 109.47544 * 300.00498 * 3 2 1 32 32 H 1.09006 * 109.47629 * 305.00289 * 4 3 2 33 33 H 1.09003 * 109.47726 * 184.99936 * 4 3 2 34 34 H 1.09003 * 110.23625 * 78.01872 * 6 5 4 35 35 H 1.09000 * 110.28462 * 316.00447 * 6 5 4 36 36 H 1.08996 * 113.76772 * 90.33937 * 12 11 9 37 37 H 1.08996 * 113.76651 * 318.93813 * 12 11 9 38 38 H 0.96700 * 114.00311 * 181.92380 * 14 13 12 39 39 H 0.96996 * 120.00241 * 179.97438 * 18 17 15 40 40 H 1.08997 * 113.86757 * 41.09601 * 23 11 9 41 41 H 1.09004 * 113.76551 * 269.60492 * 23 11 9 42 42 H 1.09001 * 110.48638 * 143.44915 * 24 7 6 43 43 H 1.08993 * 110.48657 * 265.96582 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1403 -0.8821 -1.4454 7 6 5.0110 -1.0307 -2.7128 8 1 6.0677 -1.0994 -2.4543 9 6 4.5792 -2.2231 -3.5270 10 8 3.6933 -2.9455 -3.1217 11 7 5.1774 -2.4866 -4.7056 12 6 5.0181 -3.5316 -5.7356 13 6 6.4793 -3.2319 -6.1161 14 8 7.4322 -4.0352 -5.4170 15 6 6.7231 -3.1918 -7.6028 16 1 5.9140 -3.3959 -8.2883 17 6 7.9792 -2.8944 -8.0876 18 7 8.9645 -2.6463 -7.2527 19 14 8.2812 -2.8439 -9.9303 20 1 8.0327 -1.4696 -10.4351 21 1 9.6878 -3.2279 -10.2121 22 1 7.3633 -3.7939 -10.6086 23 6 6.2573 -1.8447 -5.4867 24 6 4.7089 0.2886 -3.4605 25 6 4.2842 1.2452 -2.3681 26 8 4.2286 2.4512 -2.4838 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.1697 -1.3544 -1.5971 35 1 4.6456 -1.3241 -0.5867 36 1 4.2999 -3.2750 -6.5143 37 1 4.8663 -4.5309 -5.3277 38 1 8.3525 -3.8299 -5.6314 39 1 9.8482 -2.4374 -7.5937 40 1 7.0942 -1.4984 -4.8803 41 1 5.9022 -1.0938 -6.1925 42 1 5.6039 0.6561 -3.9626 43 1 3.9019 0.1439 -4.1787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331481350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:48 Heat of formation + Delta-G solvation = -143.775244 kcal Electronic energy + Delta-G solvation = -26693.542999 eV Core-core repulsion = 22739.588321 eV Total energy + Delta-G solvation = -3953.954678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.95405 -40.82559 -39.11807 -38.81431 -37.25253 -35.77373 -34.42137 -34.10959 -30.96022 -29.78255 -28.77102 -27.42721 -27.00066 -26.94207 -24.37153 -23.65969 -21.56380 -20.53252 -19.90355 -19.20199 -18.38431 -18.05382 -17.51687 -17.27223 -17.05972 -16.69569 -16.51874 -16.19491 -15.97471 -15.77328 -15.67502 -15.11952 -14.75912 -14.42107 -14.28526 -14.08284 -14.00028 -13.59820 -13.38112 -13.34010 -13.10836 -12.95501 -12.81704 -12.74737 -12.49957 -12.42208 -12.23816 -12.15547 -12.09119 -11.41207 -11.10764 -10.85777 -10.66674 -10.60245 -10.20478 -9.80379 -9.54959 -8.23946 -6.39813 1.39861 1.47854 1.52132 1.57437 1.60469 1.75880 2.04994 2.42943 2.82346 2.98914 3.09938 3.31207 3.53072 3.80341 3.80736 4.01914 4.07852 4.13432 4.23058 4.31390 4.42994 4.48434 4.49516 4.51179 4.53729 4.58155 4.64457 4.73791 4.77706 4.83172 4.84968 4.90665 4.97046 5.03945 5.29233 5.45298 5.76066 5.93457 5.97078 6.18323 6.65418 6.85206 7.00363 7.11917 7.33802 7.48602 8.81656 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003108 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.922696 B = 9008.226792 C = 9502.896580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.606 5.606 6 C 0.132 3.868 7 C -0.109 4.109 8 H 0.131 0.869 9 C 0.538 3.462 10 O -0.587 6.587 11 N -0.629 5.629 12 C 0.112 3.888 13 C 0.218 3.782 14 O -0.585 6.585 15 C -0.556 4.556 16 H 0.070 0.930 17 C 0.036 3.964 18 N -0.913 5.913 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.095 3.905 24 C -0.136 4.136 25 C 0.521 3.479 26 O -0.569 6.569 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.275 0.725 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 7.628 12.512 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.035 4.035 4 C 0.002 3.998 5 N -0.338 5.338 6 C 0.009 3.991 7 C -0.130 4.130 8 H 0.149 0.851 9 C 0.328 3.672 10 O -0.469 6.469 11 N -0.361 5.361 12 C -0.010 4.010 13 C 0.177 3.823 14 O -0.397 6.397 15 C -0.594 4.594 16 H 0.088 0.912 17 C -0.165 4.165 18 N -0.554 5.554 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.028 4.028 24 C -0.176 4.176 25 C 0.309 3.691 26 O -0.449 6.449 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.580 7.562 13.208 17.983 hybrid contribution 0.514 0.322 -1.334 1.465 sum -9.065 7.884 11.874 16.891 Atomic orbital electron populations 1.22858 0.79922 1.03456 1.00555 1.87888 1.21087 1.28223 1.95531 1.23069 0.94180 0.85000 1.01213 1.21713 0.92385 1.00452 0.85273 1.48318 1.65341 1.07711 1.12423 1.21913 1.00497 0.79934 0.96782 1.22097 1.03481 0.91928 0.95507 0.85067 1.20174 0.80472 0.85912 0.80624 1.90643 1.32877 1.51996 1.71337 1.50216 1.37628 1.30381 1.17891 1.23445 0.97943 0.91505 0.88154 1.20112 0.85537 0.86858 0.89840 1.86049 1.21221 1.63124 1.69274 1.21724 0.96678 1.49228 0.91736 0.91207 1.25667 0.95527 0.92916 1.02412 1.69444 1.02394 1.47366 1.36158 0.85472 0.77208 0.78531 0.79902 1.19834 1.21037 1.19741 1.24179 0.87120 0.99749 0.91741 1.22258 1.05217 0.92713 0.97462 1.20902 0.75892 0.87645 0.84645 1.90686 1.56337 1.14854 1.82998 0.89151 0.92245 0.94494 0.89485 0.94702 0.87032 0.87638 0.90464 0.87739 0.88078 0.92143 0.75848 0.91532 0.90843 0.88883 0.86164 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -8.82 10.53 -148.98 -1.57 -10.39 16 3 C 0.04 0.77 6.28 71.98 0.45 1.23 16 4 C 0.12 2.19 6.32 86.38 0.55 2.74 16 5 N -0.61 -14.31 2.88 -817.82 -2.36 -16.67 16 6 C 0.13 3.23 6.57 86.82 0.57 3.81 16 7 C -0.11 -2.94 3.32 -10.48 -0.03 -2.97 16 8 H 0.13 3.15 8.14 -2.38 -0.02 3.13 16 9 C 0.54 19.33 7.29 87.66 0.64 19.97 16 10 O -0.59 -24.53 16.26 -3.03 -0.05 -24.58 16 11 N -0.63 -23.95 3.61 -839.35 -3.03 -26.98 16 12 C 0.11 4.58 8.23 86.49 0.71 5.29 16 13 C 0.22 9.80 1.40 -10.88 -0.02 9.79 16 14 O -0.59 -28.73 13.48 -148.98 -2.01 -30.74 16 15 C -0.56 -26.53 8.61 25.60 0.22 -26.31 16 16 H 0.07 3.27 7.81 -2.91 -0.02 3.24 16 17 C 0.04 1.69 5.39 84.66 0.46 2.15 16 18 N -0.91 -44.11 11.20 21.45 0.24 -43.87 16 19 Si 0.96 38.36 29.54 68.60 2.03 40.39 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 C 0.09 3.65 7.71 86.42 0.67 4.31 16 24 C -0.14 -3.58 6.07 30.59 0.19 -3.40 16 25 C 0.52 14.67 8.02 87.90 0.71 15.38 16 26 O -0.57 -19.44 17.60 -3.01 -0.05 -19.49 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.11 1.75 7.93 -2.39 -0.02 1.73 16 34 H 0.08 2.28 7.01 -2.39 -0.02 2.27 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.10 3.79 8.09 -2.39 -0.02 3.77 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.39 19.32 6.60 -74.06 -0.49 18.83 16 39 H 0.27 12.67 8.31 -92.71 -0.77 11.90 16 40 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.09 3.42 8.09 -2.39 -0.02 3.40 16 42 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.10 2.81 7.89 -2.39 -0.02 2.79 16 Total: -1.00 -62.07 363.94 0.09 -61.98 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.53 Total: 36.65 kcal Atomic # 6 Polarization: 27.34 SS G_CDS: 6.35 Total: 33.69 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -5.14 Total: -87.51 kcal Atomic # 8 Polarization: -81.52 SS G_CDS: -3.68 Total: -85.20 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -62.07 0.09 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331481350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.792 kcal (2) G-P(sol) polarization free energy of solvation -62.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds