Wall clock time and date at job start Fri Apr 10 2020 18:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00156 * 2 1 4 4 C 1.52999 * 109.47173 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46976 * 65.00536 * 4 3 2 6 6 C 1.46765 * 124.34930 * 89.99711 * 5 4 3 7 7 C 1.54476 * 105.47533 * 162.96183 * 6 5 4 8 8 H 1.09000 * 110.96970 * 267.26332 * 7 6 5 9 9 C 1.50698 * 110.96851 * 143.53261 * 7 6 5 10 10 O 1.21279 * 120.00417 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99721 * 179.97438 * 9 7 6 12 12 C 1.47585 * 134.49032 * 180.02562 * 11 9 7 13 13 C 1.53947 * 86.11441 * 155.36424 * 12 11 9 14 14 O 1.42896 * 113.73927 * 269.14946 * 13 12 11 15 15 C 1.50706 * 113.73812 * 137.95244 * 13 12 11 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00338 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99426 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47555 * 90.00165 * 19 17 15 21 21 H 1.48503 * 109.46814 * 210.00053 * 19 17 15 22 22 H 1.48496 * 109.47318 * 329.99545 * 19 17 15 23 23 C 1.47580 * 134.49428 * 0.02562 * 11 9 7 24 24 C 1.54629 * 101.76175 * 25.41619 * 7 6 5 25 25 C 1.34420 * 124.35008 * 269.97643 * 5 4 3 26 26 O 1.21282 * 124.94380 * 0.42554 * 25 5 4 27 27 H 1.09000 * 109.47090 * 59.98964 * 1 2 3 28 28 H 1.08999 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46884 * 299.99446 * 1 2 3 30 30 H 1.09010 * 109.46605 * 60.00563 * 3 2 1 31 31 H 1.08995 * 109.47711 * 300.00764 * 3 2 1 32 32 H 1.09001 * 109.47261 * 305.00385 * 4 3 2 33 33 H 1.08997 * 109.46911 * 185.00398 * 4 3 2 34 34 H 1.09003 * 110.24484 * 43.96309 * 6 5 4 35 35 H 1.08996 * 110.24785 * 281.96475 * 6 5 4 36 36 H 1.08992 * 113.77150 * 41.06169 * 12 11 9 37 37 H 1.09001 * 113.76777 * 269.66770 * 12 11 9 38 38 H 0.96709 * 113.99737 * 178.07268 * 14 13 12 39 39 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 40 40 H 1.08996 * 113.77201 * 90.33267 * 23 11 9 41 41 H 1.09002 * 113.76575 * 318.93222 * 23 11 9 42 42 H 1.09008 * 110.48424 * 93.87782 * 24 7 6 43 43 H 1.09004 * 110.48646 * 216.51826 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.3109 1.3088 -2.4725 7 6 5.1158 0.3235 -3.3486 8 1 6.1861 0.4289 -3.1716 9 6 4.7921 0.5116 -4.8083 10 8 3.9897 1.3553 -5.1478 11 7 5.3951 -0.2572 -5.7367 12 6 5.3251 -0.3484 -7.2081 13 6 6.7429 -0.9438 -7.1339 14 8 7.7823 0.0326 -7.2242 15 6 6.9571 -2.1170 -8.0554 16 1 6.1516 -2.4621 -8.6865 17 6 8.1820 -2.7490 -8.0933 18 7 9.1633 -2.3277 -7.3258 19 14 8.4477 -4.2026 -9.2359 20 1 8.9369 -3.7159 -10.5508 21 1 9.4530 -5.1209 -8.6430 22 1 7.1649 -4.9269 -9.4222 23 6 6.3905 -1.3458 -5.6903 24 6 4.6018 -1.0431 -2.8394 25 6 4.1247 -0.7593 -1.4322 26 8 3.9083 -1.6034 -0.5886 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8465 -0.8898 32 1 3.8515 0.5681 0.8409 33 1 3.9785 2.1764 0.0890 34 1 4.9194 2.1795 -2.2277 35 1 3.4016 1.6164 -2.9887 36 1 5.2808 0.6198 -7.7067 37 1 4.5726 -1.0492 -7.5695 38 1 8.6740 -0.3341 -7.1485 39 1 10.0251 -2.7722 -7.3528 40 1 5.9510 -2.3396 -5.6058 41 1 7.1967 -1.1737 -4.9772 42 1 3.7764 -1.3949 -3.4584 43 1 5.4100 -1.7745 -2.8281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331481353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:52 Heat of formation + Delta-G solvation = -120.144716 kcal Electronic energy + Delta-G solvation = -26658.647907 eV Core-core repulsion = 22705.717926 eV Total energy + Delta-G solvation = -3952.929981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69434 -39.34624 -37.94125 -37.51418 -35.98283 -34.03308 -33.35141 -32.23868 -29.76312 -28.40162 -27.61549 -26.47620 -25.51363 -25.32998 -23.42619 -22.38817 -19.97863 -19.39642 -18.39288 -17.52482 -17.04033 -16.90865 -16.63569 -15.92540 -15.76003 -15.40299 -15.20438 -14.93855 -14.64095 -14.41015 -14.15476 -13.64823 -13.52663 -13.22883 -12.91644 -12.78011 -12.59990 -12.47613 -12.13472 -12.02743 -11.90054 -11.59432 -11.44004 -11.32722 -11.25826 -11.08602 -11.07514 -10.54076 -10.33546 -9.94814 -9.82510 -9.57867 -9.27202 -8.80377 -8.72203 -8.48040 -7.93398 -6.43367 -4.53499 2.69927 2.86553 3.01878 3.13362 3.21694 3.23912 3.43084 3.61339 4.15938 4.31365 4.44910 4.75067 4.80649 4.83668 4.90155 4.94459 5.04689 5.13955 5.17522 5.20273 5.25608 5.45838 5.50369 5.55514 5.58325 5.65467 5.79502 5.88014 5.97517 6.11990 6.31089 6.43867 6.47468 6.54372 6.61249 6.98249 7.04423 7.11954 7.59670 7.77347 8.26164 8.36655 8.49660 8.60146 9.17920 9.40757 10.63348 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.003021 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.867227 B = 9267.675653 C = 9588.565528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.130 3.870 5 N -0.620 5.620 6 C 0.119 3.881 7 C -0.116 4.116 8 H 0.114 0.886 9 C 0.540 3.460 10 O -0.562 6.562 11 N -0.626 5.626 12 C 0.112 3.888 13 C 0.239 3.761 14 O -0.573 6.573 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.076 3.924 24 C -0.141 4.141 25 C 0.527 3.473 26 O -0.519 6.519 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.393 0.607 39 H 0.274 0.726 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 5.836 12.095 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.038 4.038 4 C 0.008 3.992 5 N -0.355 5.355 6 C -0.004 4.004 7 C -0.138 4.138 8 H 0.132 0.868 9 C 0.328 3.672 10 O -0.442 6.442 11 N -0.359 5.359 12 C -0.010 4.010 13 C 0.197 3.803 14 O -0.386 6.386 15 C -0.575 4.575 16 H 0.090 0.910 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.047 4.047 24 C -0.181 4.181 25 C 0.314 3.686 26 O -0.394 6.394 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.249 0.751 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.647 6.166 12.564 16.998 hybrid contribution 0.477 -0.849 -0.465 1.079 sum -9.171 5.317 12.099 16.086 Atomic orbital electron populations 1.22724 0.81452 1.02739 0.99561 1.88070 1.19209 1.26799 1.95265 1.23032 0.94604 0.85726 1.00466 1.21385 0.92128 0.99219 0.86469 1.48197 1.67491 1.07421 1.12374 1.21974 1.00501 0.94053 0.83908 1.22104 1.02483 0.96054 0.93168 0.86821 1.19561 0.80042 0.81397 0.86170 1.90639 1.35785 1.35988 1.81838 1.50140 1.42232 1.35341 1.08141 1.23496 0.98491 1.00644 0.78358 1.19832 0.84317 0.86416 0.89717 1.86054 1.19907 1.36924 1.95692 1.21504 0.98491 1.13419 1.24119 0.91039 1.25061 0.95510 0.97464 0.94951 1.69304 1.03723 1.42082 1.38739 0.86330 0.78303 0.81355 0.80543 1.20278 1.20914 1.19544 1.24382 0.88597 0.89009 1.02689 1.22294 1.03745 0.97444 0.94657 1.20684 0.76374 0.82104 0.89389 1.90714 1.51021 1.49060 1.48647 0.94273 0.89715 0.94346 0.92459 0.92941 0.89140 0.88730 0.89985 0.89279 0.91041 0.89541 0.75122 0.91606 0.89771 0.91233 0.87628 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.90 10.22 -35.23 -0.36 -5.26 16 3 C 0.04 0.39 6.28 37.16 0.23 0.62 16 4 C 0.13 1.30 6.33 -4.04 -0.03 1.27 16 5 N -0.62 -7.82 2.90 -172.42 -0.50 -8.32 16 6 C 0.12 1.46 6.71 -3.12 -0.02 1.44 16 7 C -0.12 -1.64 3.30 -90.14 -0.30 -1.93 16 8 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 9 C 0.54 9.79 7.29 -10.99 -0.08 9.71 16 10 O -0.56 -11.60 16.23 5.56 0.09 -11.51 16 11 N -0.63 -12.10 3.61 -178.32 -0.64 -12.74 16 12 C 0.11 2.29 8.22 -2.97 -0.02 2.27 16 13 C 0.24 5.41 1.44 -90.85 -0.13 5.28 16 14 O -0.57 -14.02 13.48 -35.23 -0.48 -14.49 16 15 C -0.54 -12.92 8.62 -34.44 -0.30 -13.22 16 16 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 18 N -0.90 -21.94 11.08 55.43 0.61 -21.32 16 19 Si 0.91 18.98 29.54 -169.99 -5.02 13.96 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C 0.08 1.50 7.90 -2.98 -0.02 1.48 16 24 C -0.14 -1.98 6.30 -26.74 -0.17 -2.15 16 25 C 0.53 8.06 7.73 -10.86 -0.08 7.98 16 26 O -0.52 -9.67 17.46 5.56 0.10 -9.57 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.99 7.93 -51.93 -0.41 0.57 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.22 6.96 -51.93 -0.36 0.85 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 38 H 0.39 9.75 6.45 45.56 0.29 10.04 16 39 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 40 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.11 1.53 7.89 -51.92 -0.41 1.12 16 43 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -30.36 363.47 -6.55 -36.91 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.92 Total: 11.05 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 0.10 Total: 15.81 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.53 Total: -42.38 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.65 Total: -40.83 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.36 -6.55 -36.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331481353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.235 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds