Wall clock time and date at job start Fri Apr 10 2020 18:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00156 * 2 1 4 4 C 1.52999 * 109.47173 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46976 * 65.00536 * 4 3 2 6 6 C 1.46765 * 124.34930 * 89.99711 * 5 4 3 7 7 C 1.54476 * 105.47533 * 162.96183 * 6 5 4 8 8 H 1.09000 * 110.96970 * 267.26332 * 7 6 5 9 9 C 1.50698 * 110.96851 * 143.53261 * 7 6 5 10 10 O 1.21279 * 120.00417 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99721 * 179.97438 * 9 7 6 12 12 C 1.47585 * 134.49032 * 180.02562 * 11 9 7 13 13 C 1.53947 * 86.11441 * 155.36424 * 12 11 9 14 14 O 1.42896 * 113.73927 * 269.14946 * 13 12 11 15 15 C 1.50706 * 113.73812 * 137.95244 * 13 12 11 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00338 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99426 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47555 * 90.00165 * 19 17 15 21 21 H 1.48503 * 109.46814 * 210.00053 * 19 17 15 22 22 H 1.48496 * 109.47318 * 329.99545 * 19 17 15 23 23 C 1.47580 * 134.49428 * 0.02562 * 11 9 7 24 24 C 1.54629 * 101.76175 * 25.41619 * 7 6 5 25 25 C 1.34420 * 124.35008 * 269.97643 * 5 4 3 26 26 O 1.21282 * 124.94380 * 0.42554 * 25 5 4 27 27 H 1.09000 * 109.47090 * 59.98964 * 1 2 3 28 28 H 1.08999 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46884 * 299.99446 * 1 2 3 30 30 H 1.09010 * 109.46605 * 60.00563 * 3 2 1 31 31 H 1.08995 * 109.47711 * 300.00764 * 3 2 1 32 32 H 1.09001 * 109.47261 * 305.00385 * 4 3 2 33 33 H 1.08997 * 109.46911 * 185.00398 * 4 3 2 34 34 H 1.09003 * 110.24484 * 43.96309 * 6 5 4 35 35 H 1.08996 * 110.24785 * 281.96475 * 6 5 4 36 36 H 1.08992 * 113.77150 * 41.06169 * 12 11 9 37 37 H 1.09001 * 113.76777 * 269.66770 * 12 11 9 38 38 H 0.96709 * 113.99737 * 178.07268 * 14 13 12 39 39 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 40 40 H 1.08996 * 113.77201 * 90.33267 * 23 11 9 41 41 H 1.09002 * 113.76575 * 318.93222 * 23 11 9 42 42 H 1.09008 * 110.48424 * 93.87782 * 24 7 6 43 43 H 1.09004 * 110.48646 * 216.51826 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.3109 1.3088 -2.4725 7 6 5.1158 0.3235 -3.3486 8 1 6.1861 0.4289 -3.1716 9 6 4.7921 0.5116 -4.8083 10 8 3.9897 1.3553 -5.1478 11 7 5.3951 -0.2572 -5.7367 12 6 5.3251 -0.3484 -7.2081 13 6 6.7429 -0.9438 -7.1339 14 8 7.7823 0.0326 -7.2242 15 6 6.9571 -2.1170 -8.0554 16 1 6.1516 -2.4621 -8.6865 17 6 8.1820 -2.7490 -8.0933 18 7 9.1633 -2.3277 -7.3258 19 14 8.4477 -4.2026 -9.2359 20 1 8.9369 -3.7159 -10.5508 21 1 9.4530 -5.1209 -8.6430 22 1 7.1649 -4.9269 -9.4222 23 6 6.3905 -1.3458 -5.6903 24 6 4.6018 -1.0431 -2.8394 25 6 4.1247 -0.7593 -1.4322 26 8 3.9083 -1.6034 -0.5886 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8465 -0.8898 32 1 3.8515 0.5681 0.8409 33 1 3.9785 2.1764 0.0890 34 1 4.9194 2.1795 -2.2277 35 1 3.4016 1.6164 -2.9887 36 1 5.2808 0.6198 -7.7067 37 1 4.5726 -1.0492 -7.5695 38 1 8.6740 -0.3341 -7.1485 39 1 10.0251 -2.7722 -7.3528 40 1 5.9510 -2.3396 -5.6058 41 1 7.1967 -1.1737 -4.9772 42 1 3.7764 -1.3949 -3.4584 43 1 5.4100 -1.7745 -2.8281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331481353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:51 Heat of formation + Delta-G solvation = -142.792711 kcal Electronic energy + Delta-G solvation = -26659.629998 eV Core-core repulsion = 22705.717926 eV Total energy + Delta-G solvation = -3953.912072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91407 -40.80801 -39.12076 -38.74666 -37.21375 -35.79215 -34.38081 -34.09105 -30.94173 -29.77486 -28.74990 -27.38082 -27.04808 -26.96041 -24.45190 -23.48810 -21.56776 -20.49700 -19.89318 -19.21988 -18.37974 -17.96385 -17.53292 -17.32287 -17.02671 -16.70577 -16.41648 -16.21647 -15.96526 -15.77234 -15.58654 -15.08706 -14.66266 -14.42363 -14.26306 -14.07281 -13.99527 -13.63841 -13.56294 -13.36153 -12.99709 -12.82620 -12.78773 -12.73738 -12.46102 -12.41611 -12.21061 -12.15703 -12.10751 -11.41710 -11.06258 -10.81415 -10.62555 -10.59656 -10.21017 -9.74709 -9.55506 -8.24582 -6.40356 1.47746 1.51105 1.52240 1.57660 1.60235 1.78478 2.08051 2.42615 2.89100 2.98246 3.12380 3.32631 3.54025 3.81319 3.83865 4.06003 4.08421 4.15815 4.22821 4.36271 4.44186 4.45886 4.48854 4.51184 4.52165 4.57340 4.64092 4.72637 4.79397 4.82492 4.85356 4.88692 4.95808 5.01741 5.28857 5.52461 5.76229 5.96349 6.02776 6.26155 6.64777 6.84996 7.08971 7.14299 7.33338 7.51196 8.80985 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.003021 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.867227 B = 9267.675653 C = 9588.565528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.036 3.964 4 C 0.123 3.877 5 N -0.611 5.611 6 C 0.125 3.875 7 C -0.108 4.108 8 H 0.131 0.869 9 C 0.539 3.461 10 O -0.587 6.587 11 N -0.628 5.628 12 C 0.112 3.888 13 C 0.218 3.782 14 O -0.586 6.586 15 C -0.555 4.555 16 H 0.070 0.930 17 C 0.035 3.965 18 N -0.915 5.915 19 Si 0.964 3.036 20 H -0.280 1.280 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.092 3.908 24 C -0.136 4.136 25 C 0.522 3.478 26 O -0.559 6.559 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.388 0.612 39 H 0.275 0.725 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 6.417 12.946 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.041 4.041 4 C 0.002 3.998 5 N -0.345 5.345 6 C 0.002 3.998 7 C -0.129 4.129 8 H 0.149 0.851 9 C 0.329 3.671 10 O -0.469 6.469 11 N -0.360 5.360 12 C -0.011 4.011 13 C 0.176 3.824 14 O -0.398 6.398 15 C -0.593 4.593 16 H 0.089 0.911 17 C -0.166 4.166 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.206 1.206 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.030 4.030 24 C -0.177 4.177 25 C 0.310 3.690 26 O -0.438 6.438 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.243 0.757 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.846 6.786 13.422 17.977 hybrid contribution 0.493 -0.954 -0.753 1.312 sum -9.353 5.831 12.670 16.793 Atomic orbital electron populations 1.22833 0.80162 1.03057 1.00714 1.88024 1.20900 1.28843 1.95544 1.23185 0.94221 0.84857 1.01850 1.21727 0.92656 1.00745 0.84684 1.48284 1.66292 1.06619 1.13288 1.21986 1.00199 0.94316 0.83269 1.22071 1.03762 0.96681 0.90398 0.85120 1.20176 0.79165 0.80333 0.87434 1.90628 1.36806 1.36886 1.82590 1.50117 1.42500 1.35564 1.07799 1.23457 0.97789 1.00333 0.79489 1.20109 0.84613 0.86229 0.91405 1.86040 1.20054 1.37759 1.95956 1.21745 0.98790 1.14041 1.24697 0.91135 1.25678 0.95372 0.99461 0.96083 1.69360 1.03922 1.42777 1.39459 0.85456 0.78112 0.78816 0.78647 1.20607 1.20763 1.19200 1.24134 0.88671 0.89439 1.00802 1.22247 1.03742 0.97638 0.94057 1.20822 0.76155 0.82758 0.89252 1.90691 1.53064 1.50276 1.49767 0.93898 0.89963 0.92320 0.89665 0.92805 0.90233 0.84767 0.86798 0.90422 0.92048 0.88140 0.75663 0.91476 0.88953 0.90894 0.88298 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.43 10.22 -148.98 -1.52 -11.95 16 3 C 0.04 0.63 6.28 71.98 0.45 1.09 16 4 C 0.12 2.15 6.33 86.38 0.55 2.70 16 5 N -0.61 -14.21 2.90 -818.00 -2.37 -16.58 16 6 C 0.13 2.75 6.71 86.83 0.58 3.34 16 7 C -0.11 -2.82 3.30 -10.48 -0.03 -2.86 16 8 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 9 C 0.54 18.85 7.29 87.66 0.64 19.49 16 10 O -0.59 -23.64 16.23 -3.03 -0.05 -23.69 16 11 N -0.63 -23.66 3.61 -840.31 -3.03 -26.69 16 12 C 0.11 4.54 8.22 86.48 0.71 5.25 16 13 C 0.22 9.78 1.44 -10.88 -0.02 9.76 16 14 O -0.59 -28.72 13.48 -148.98 -2.01 -30.73 16 15 C -0.55 -26.47 8.62 25.60 0.22 -26.25 16 16 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 17 C 0.03 1.65 5.40 84.66 0.46 2.11 16 18 N -0.91 -44.29 11.08 21.45 0.24 -44.05 16 19 Si 0.96 38.42 29.54 68.60 2.03 40.45 16 20 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 23 C 0.09 3.55 7.90 86.48 0.68 4.24 16 24 C -0.14 -3.67 6.30 30.59 0.19 -3.48 16 25 C 0.52 15.50 7.73 87.90 0.68 16.18 16 26 O -0.56 -20.83 17.46 -3.04 -0.05 -20.88 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.61 7.93 -2.39 -0.02 1.59 16 33 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.96 6.96 -2.39 -0.02 1.95 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.10 3.74 8.09 -2.39 -0.02 3.73 16 38 H 0.39 19.40 6.45 -74.05 -0.48 18.92 16 39 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 40 H 0.09 3.40 8.09 -2.39 -0.02 3.38 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.10 2.81 7.89 -2.38 -0.02 2.79 16 43 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -64.88 363.47 0.13 -64.75 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.54 Total: 36.06 kcal Atomic # 6 Polarization: 26.97 SS G_CDS: 6.36 Total: 33.33 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -5.16 Total: -87.33 kcal Atomic # 8 Polarization: -83.62 SS G_CDS: -3.63 Total: -87.25 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -64.88 0.13 -64.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331481353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.047 kcal (2) G-P(sol) polarization free energy of solvation -64.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds