Wall clock time and date at job start Fri Apr 10 2020 18:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99972 * 2 1 4 4 O 1.20824 * 120.00231 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00048 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.51216 * 305.00770 * 5 3 2 7 7 C 1.53295 * 109.51056 * 65.10481 * 5 3 2 8 8 N 1.47148 * 108.38629 * 172.22216 * 7 5 3 9 9 C 1.34777 * 120.97897 * 129.48586 * 8 7 5 10 10 O 1.21591 * 120.00222 * 354.01554 * 9 8 7 11 11 N 1.34783 * 120.00102 * 174.02162 * 9 8 7 12 12 C 1.46498 * 120.00345 * 186.25847 * 11 9 8 13 13 C 1.52990 * 109.47251 * 183.89978 * 12 11 9 14 14 C 1.50696 * 115.55270 * 305.95089 * 13 12 11 15 15 H 1.08006 * 120.00155 * 144.07965 * 14 13 12 16 16 C 1.37875 * 119.99928 * 324.07881 * 14 13 12 17 17 N 1.31505 * 119.99965 * 351.52034 * 16 14 13 18 18 Si 1.86802 * 119.99937 * 171.51519 * 16 14 13 19 19 H 1.48500 * 109.47284 * 60.00315 * 18 16 14 20 20 H 1.48503 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47423 * 300.00152 * 18 16 14 22 22 C 1.53004 * 117.49882 * 160.27754 * 13 12 11 23 23 C 1.53000 * 117.49821 * 91.61992 * 13 12 11 24 24 C 1.47151 * 118.03961 * 309.46831 * 8 7 5 25 25 C 1.53296 * 108.38090 * 50.52892 * 24 8 7 26 26 O 1.42947 * 109.26813 * 307.72387 * 25 24 8 27 27 H 1.09000 * 109.46661 * 299.99410 * 1 2 3 28 28 H 1.09003 * 109.47337 * 59.99437 * 1 2 3 29 29 H 1.09000 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.68346 * 291.95032 * 7 5 3 31 31 H 1.09003 * 109.68274 * 52.46463 * 7 5 3 32 32 H 0.97003 * 119.99550 * 6.25149 * 11 9 8 33 33 H 1.09000 * 109.46974 * 303.90025 * 12 11 9 34 34 H 1.09000 * 109.46770 * 63.89651 * 12 11 9 35 35 H 0.97003 * 119.99916 * 185.02636 * 17 16 14 36 36 H 1.09000 * 117.49728 * 0.02562 * 22 13 12 37 37 H 1.09003 * 117.49871 * 145.02141 * 22 13 12 38 38 H 1.09003 * 117.50118 * 214.97982 * 23 13 12 39 39 H 1.09002 * 117.49782 * 359.97438 * 23 13 12 40 40 H 1.09000 * 109.68325 * 170.24980 * 24 8 7 41 41 H 1.08995 * 109.68209 * 290.77263 * 24 8 7 42 42 H 1.09000 * 109.51092 * 67.62617 * 25 24 8 43 43 H 1.08999 * 109.51016 * 187.71925 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9611 0.7052 0.8406 7 6 4.1089 0.6945 -1.3116 8 7 5.5565 0.9524 -1.3694 9 6 6.4276 -0.0395 -1.6409 10 8 6.0335 -1.1859 -1.7349 11 7 7.7356 0.2393 -1.8082 12 6 8.6599 -0.8132 -2.2375 13 6 10.0870 -0.2623 -2.2559 14 6 10.2892 0.9919 -3.0665 15 1 10.9846 1.7465 -2.7295 16 6 9.5866 1.1761 -4.2384 17 7 8.8688 0.1931 -4.7361 18 14 9.6541 2.8222 -5.1190 19 1 11.0590 3.1271 -5.4914 20 1 8.8194 2.7619 -6.3458 21 1 9.1382 3.8859 -4.2204 22 6 11.2350 -1.2731 -2.2202 23 6 10.9233 -0.4245 -0.9850 24 6 6.0249 2.3253 -1.1223 25 6 5.3889 2.8262 0.1795 26 8 3.9730 2.6406 0.1146 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9259 -0.3796 -1.3411 31 1 3.6160 1.1742 -2.1572 32 1 8.0650 1.1368 -1.6443 33 1 8.6030 -1.6519 -1.5436 34 1 8.3874 -1.1500 -3.2377 35 1 8.4336 0.2978 -5.5967 36 1 10.9734 -2.3306 -2.1840 37 1 12.1367 -1.0308 -2.7828 38 1 11.6200 0.3758 -0.7354 39 1 10.4565 -0.9233 -0.1356 40 1 7.1106 2.3311 -1.0264 41 1 5.7260 2.9696 -1.9491 42 1 5.7910 2.2627 1.0214 43 1 5.6125 3.8850 0.3100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332225844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:58 Heat of formation + Delta-G solvation = -110.075138 kcal Electronic energy + Delta-G solvation = -27056.097853 eV Core-core repulsion = 23103.604522 eV Total energy + Delta-G solvation = -3952.493331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94743 -39.88018 -38.33260 -36.78974 -36.54480 -34.46766 -33.31373 -32.26549 -31.83823 -28.65828 -27.57589 -26.05641 -25.45018 -24.30632 -22.71643 -21.26659 -21.03243 -19.36827 -19.27074 -18.17789 -17.75960 -17.12807 -16.78489 -16.36735 -16.00625 -15.65858 -15.31757 -14.96957 -14.70578 -14.54726 -14.10794 -13.92131 -13.43782 -13.33964 -13.12512 -12.99892 -12.75695 -12.33255 -12.00666 -11.79541 -11.68418 -11.49955 -11.09645 -11.07294 -11.02770 -10.86521 -10.56102 -10.50028 -10.34196 -10.28214 -9.74478 -9.37401 -9.14471 -8.87257 -8.52420 -8.28170 -7.80107 -6.10177 -4.23286 1.90805 2.09789 2.93012 3.17114 3.26137 3.26702 3.76072 3.83681 4.24216 4.38254 4.49950 4.61031 4.73129 4.86911 4.87917 4.94828 4.98299 5.08785 5.14549 5.28426 5.44111 5.45279 5.61098 5.71207 5.85632 5.99079 6.06862 6.27677 6.51576 6.53341 6.59133 6.69139 6.72560 6.86303 7.00410 7.24419 7.36412 7.51986 7.55040 7.60835 7.89495 8.27787 8.65199 8.80218 9.27060 9.38585 10.85144 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.003759 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.816862 B = 7447.762890 C = 7962.149112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.473 3.527 4 O -0.485 6.485 5 C 0.088 3.912 6 H 0.103 0.897 7 C 0.115 3.885 8 N -0.639 5.639 9 C 0.706 3.294 10 O -0.600 6.600 11 N -0.703 5.703 12 C 0.178 3.822 13 C 0.038 3.962 14 C -0.503 4.503 15 H 0.061 0.939 16 C 0.077 3.923 17 N -0.865 5.865 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.195 4.195 23 C -0.212 4.212 24 C 0.074 3.926 25 C 0.052 3.948 26 O -0.358 6.358 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.025 0.975 34 H 0.108 0.892 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 2.588 9.219 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.314 3.686 4 O -0.370 6.370 5 C 0.028 3.972 6 H 0.121 0.879 7 C -0.010 4.010 8 N -0.380 5.380 9 C 0.408 3.592 10 O -0.480 6.480 11 N -0.356 5.356 12 C 0.055 3.945 13 C 0.038 3.962 14 C -0.540 4.540 15 H 0.079 0.921 16 C -0.128 4.128 17 N -0.501 5.501 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.233 4.233 23 C -0.249 4.249 24 C -0.050 4.050 25 C -0.025 4.025 26 O -0.277 6.277 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.232 0.768 33 H 0.044 0.956 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.777 2.143 8.965 14.955 hybrid contribution 0.362 1.253 -0.498 1.396 sum -11.415 3.395 8.467 14.612 Atomic orbital electron populations 1.23323 0.75671 1.04005 1.02682 1.86510 1.23782 1.32450 1.84105 1.22981 0.90748 0.81782 0.73122 1.90686 1.66568 1.36256 1.43531 1.21786 0.87975 0.86332 1.01144 0.87925 1.21779 0.80745 1.03759 0.94678 1.47180 1.05368 1.08181 1.77230 1.15829 0.81549 0.83743 0.78107 1.90845 1.78175 1.18850 1.60096 1.45111 1.05063 1.15116 1.70296 1.20935 0.86755 0.86249 1.00581 1.19176 0.87915 0.95591 0.93557 1.20453 1.24550 1.02086 1.06894 0.92084 1.24968 0.94351 0.96504 0.96982 1.69825 1.31619 1.30880 1.17755 0.86687 0.78222 0.84140 0.79183 1.20203 1.21219 1.20020 1.22915 1.03096 0.95682 1.01633 1.22960 1.06581 1.03321 0.92071 1.22337 1.00716 0.83802 0.98101 1.23132 0.79731 1.02769 0.96904 1.87990 1.22978 1.22115 1.94577 0.91793 0.91657 0.87692 0.86589 0.90826 0.76792 0.95627 0.87477 0.92538 0.91461 0.90193 0.90661 0.91358 0.88344 0.90418 0.91996 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.02 10.56 -39.25 -0.41 -4.43 16 3 C 0.47 6.24 7.29 36.01 0.26 6.50 16 4 O -0.49 -7.59 16.26 -25.45 -0.41 -8.01 16 5 C 0.09 1.13 3.30 -27.73 -0.09 1.04 16 6 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 7 C 0.12 1.66 5.92 -3.54 -0.02 1.64 16 8 N -0.64 -10.41 3.02 -178.01 -0.54 -10.94 16 9 C 0.71 14.41 8.30 -86.91 -0.72 13.69 16 10 O -0.60 -14.14 15.81 5.29 0.08 -14.06 16 11 N -0.70 -14.60 5.23 -65.23 -0.34 -14.94 16 12 C 0.18 4.12 4.76 -4.05 -0.02 4.10 16 13 C 0.04 0.88 1.99 -155.67 -0.31 0.57 16 14 C -0.50 -12.32 8.28 -34.44 -0.29 -12.61 16 15 H 0.06 1.49 7.83 -52.48 -0.41 1.08 16 16 C 0.08 1.91 5.20 -17.82 -0.09 1.82 16 17 N -0.87 -22.61 10.70 55.43 0.59 -22.02 16 18 Si 0.89 19.43 29.55 -169.99 -5.02 14.41 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C -0.19 -4.18 9.96 -26.69 -0.27 -4.44 16 23 C -0.21 -4.28 9.92 -26.69 -0.26 -4.54 16 24 C 0.07 0.99 6.57 -3.53 -0.02 0.96 16 25 C 0.05 0.57 6.98 37.31 0.26 0.83 16 26 O -0.36 -4.82 9.92 -55.11 -0.55 -5.37 16 27 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.12 1.77 7.06 -51.93 -0.37 1.40 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 7.72 5.50 -40.82 -0.22 7.50 16 33 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.11 2.84 5.99 -51.93 -0.31 2.53 16 35 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.10 1.28 5.79 -51.93 -0.30 0.98 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -30.86 357.64 -7.96 -38.82 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.24 Total: 10.24 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -0.51 Total: 10.91 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.29 Total: -47.90 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.29 Total: -31.86 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.86 -7.96 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332225844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.255 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds