Wall clock time and date at job start Fri Apr 10 2020 18:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99972 * 2 1 4 4 O 1.20824 * 120.00231 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00048 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.51216 * 305.00770 * 5 3 2 7 7 C 1.53295 * 109.51056 * 65.10481 * 5 3 2 8 8 N 1.47148 * 108.38629 * 172.22216 * 7 5 3 9 9 C 1.34777 * 120.97897 * 129.48586 * 8 7 5 10 10 O 1.21591 * 120.00222 * 354.01554 * 9 8 7 11 11 N 1.34783 * 120.00102 * 174.02162 * 9 8 7 12 12 C 1.46498 * 120.00345 * 186.25847 * 11 9 8 13 13 C 1.52990 * 109.47251 * 183.89978 * 12 11 9 14 14 C 1.50696 * 115.55270 * 305.95089 * 13 12 11 15 15 H 1.08006 * 120.00155 * 144.07965 * 14 13 12 16 16 C 1.37875 * 119.99928 * 324.07881 * 14 13 12 17 17 N 1.31505 * 119.99965 * 351.52034 * 16 14 13 18 18 Si 1.86802 * 119.99937 * 171.51519 * 16 14 13 19 19 H 1.48500 * 109.47284 * 60.00315 * 18 16 14 20 20 H 1.48503 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47423 * 300.00152 * 18 16 14 22 22 C 1.53004 * 117.49882 * 160.27754 * 13 12 11 23 23 C 1.53000 * 117.49821 * 91.61992 * 13 12 11 24 24 C 1.47151 * 118.03961 * 309.46831 * 8 7 5 25 25 C 1.53296 * 108.38090 * 50.52892 * 24 8 7 26 26 O 1.42947 * 109.26813 * 307.72387 * 25 24 8 27 27 H 1.09000 * 109.46661 * 299.99410 * 1 2 3 28 28 H 1.09003 * 109.47337 * 59.99437 * 1 2 3 29 29 H 1.09000 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.68346 * 291.95032 * 7 5 3 31 31 H 1.09003 * 109.68274 * 52.46463 * 7 5 3 32 32 H 0.97003 * 119.99550 * 6.25149 * 11 9 8 33 33 H 1.09000 * 109.46974 * 303.90025 * 12 11 9 34 34 H 1.09000 * 109.46770 * 63.89651 * 12 11 9 35 35 H 0.97003 * 119.99916 * 185.02636 * 17 16 14 36 36 H 1.09000 * 117.49728 * 0.02562 * 22 13 12 37 37 H 1.09003 * 117.49871 * 145.02141 * 22 13 12 38 38 H 1.09003 * 117.50118 * 214.97982 * 23 13 12 39 39 H 1.09002 * 117.49782 * 359.97438 * 23 13 12 40 40 H 1.09000 * 109.68325 * 170.24980 * 24 8 7 41 41 H 1.08995 * 109.68209 * 290.77263 * 24 8 7 42 42 H 1.09000 * 109.51092 * 67.62617 * 25 24 8 43 43 H 1.08999 * 109.51016 * 187.71925 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9611 0.7052 0.8406 7 6 4.1089 0.6945 -1.3116 8 7 5.5565 0.9524 -1.3694 9 6 6.4276 -0.0395 -1.6409 10 8 6.0335 -1.1859 -1.7349 11 7 7.7356 0.2393 -1.8082 12 6 8.6599 -0.8132 -2.2375 13 6 10.0870 -0.2623 -2.2559 14 6 10.2892 0.9919 -3.0665 15 1 10.9846 1.7465 -2.7295 16 6 9.5866 1.1761 -4.2384 17 7 8.8688 0.1931 -4.7361 18 14 9.6541 2.8222 -5.1190 19 1 11.0590 3.1271 -5.4914 20 1 8.8194 2.7619 -6.3458 21 1 9.1382 3.8859 -4.2204 22 6 11.2350 -1.2731 -2.2202 23 6 10.9233 -0.4245 -0.9850 24 6 6.0249 2.3253 -1.1223 25 6 5.3889 2.8262 0.1795 26 8 3.9730 2.6406 0.1146 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9259 -0.3796 -1.3411 31 1 3.6160 1.1742 -2.1572 32 1 8.0650 1.1368 -1.6443 33 1 8.6030 -1.6519 -1.5436 34 1 8.3874 -1.1500 -3.2377 35 1 8.4336 0.2978 -5.5967 36 1 10.9734 -2.3306 -2.1840 37 1 12.1367 -1.0308 -2.7828 38 1 11.6200 0.3758 -0.7354 39 1 10.4565 -0.9233 -0.1356 40 1 7.1106 2.3311 -1.0264 41 1 5.7260 2.9696 -1.9491 42 1 5.7910 2.2627 1.0214 43 1 5.6125 3.8850 0.3100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332225844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:58 Heat of formation + Delta-G solvation = -129.198411 kcal Electronic energy + Delta-G solvation = -27056.927100 eV Core-core repulsion = 23103.604522 eV Total energy + Delta-G solvation = -3953.322579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.02104 -41.17435 -39.61215 -38.45084 -37.58353 -35.82378 -34.87444 -34.12080 -32.99041 -29.67698 -28.65009 -27.68332 -27.03872 -25.56496 -23.85711 -22.92099 -22.06555 -21.14867 -20.68562 -19.53359 -18.88578 -18.21353 -18.07131 -17.66235 -17.21205 -16.93686 -16.77316 -16.45472 -16.08937 -15.70773 -15.56800 -15.19461 -14.94309 -14.62377 -14.42150 -14.27724 -13.98901 -13.54107 -13.40318 -13.19348 -13.01452 -12.83194 -12.73215 -12.64784 -12.29962 -12.06185 -12.02130 -11.88209 -11.64303 -11.45026 -11.36946 -11.06826 -10.97019 -10.62290 -10.15091 -9.91731 -9.39076 -7.98246 -6.16946 0.86522 1.20462 1.44581 1.48645 1.54285 1.58887 2.22583 2.43443 2.85752 2.94919 3.17952 3.42248 3.58337 3.69113 3.72305 3.89367 4.06136 4.19235 4.27322 4.29733 4.32300 4.38349 4.53566 4.57222 4.69347 4.70038 4.78427 4.83339 4.84288 4.99765 5.11876 5.16272 5.27642 5.36772 5.55513 5.62311 5.77374 5.84096 5.94564 5.99208 6.40989 6.54310 6.83201 7.15115 7.47249 7.67223 8.94387 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.003759 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.816862 B = 7447.762890 C = 7962.149112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.479 3.521 4 O -0.513 6.513 5 C 0.095 3.905 6 H 0.118 0.882 7 C 0.116 3.884 8 N -0.635 5.635 9 C 0.703 3.297 10 O -0.638 6.638 11 N -0.700 5.700 12 C 0.192 3.808 13 C 0.012 3.988 14 C -0.507 4.507 15 H 0.061 0.939 16 C 0.040 3.960 17 N -0.892 5.892 18 Si 0.942 3.058 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.258 1.258 22 C -0.199 4.199 23 C -0.184 4.184 24 C 0.069 3.931 25 C 0.056 3.944 26 O -0.371 6.371 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.402 0.598 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.257 0.743 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 3.887 10.632 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.321 3.679 4 O -0.401 6.401 5 C 0.035 3.965 6 H 0.136 0.864 7 C -0.009 4.009 8 N -0.374 5.374 9 C 0.404 3.596 10 O -0.520 6.520 11 N -0.353 5.353 12 C 0.068 3.932 13 C 0.011 3.989 14 C -0.545 4.545 15 H 0.079 0.921 16 C -0.162 4.162 17 N -0.529 5.529 18 Si 0.769 3.231 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.183 1.183 22 C -0.238 4.238 23 C -0.221 4.221 24 C -0.054 4.054 25 C -0.020 4.020 26 O -0.290 6.290 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.239 0.761 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.830 3.481 10.407 16.137 hybrid contribution 0.360 0.801 -0.933 1.281 sum -11.471 4.282 9.474 15.481 Atomic orbital electron populations 1.23666 0.73712 1.06131 1.02967 1.86508 1.25729 1.31473 1.83488 1.22998 0.90783 0.81827 0.72327 1.90672 1.67139 1.37195 1.45061 1.21718 0.87949 0.86417 1.00442 0.86442 1.21817 0.79720 1.03338 0.95991 1.47170 1.05545 1.08611 1.76043 1.15969 0.81726 0.83981 0.77883 1.90810 1.78784 1.20767 1.61684 1.44933 1.05129 1.14901 1.70371 1.20555 0.87511 0.86807 0.98367 1.19211 0.88049 0.95793 0.95803 1.20662 1.24232 1.02585 1.06990 0.92075 1.25532 0.94177 0.98813 0.97655 1.70005 1.32729 1.32442 1.17728 0.85857 0.77784 0.81464 0.78026 1.20284 1.22317 1.18285 1.22934 1.02206 0.96016 1.02649 1.22950 1.05023 1.02701 0.91428 1.22587 1.01169 0.81930 0.99725 1.23302 0.78355 1.04710 0.95659 1.87994 1.24334 1.22149 1.94473 0.91264 0.91677 0.84703 0.87684 0.90673 0.76055 0.96124 0.91163 0.93312 0.90829 0.90603 0.89587 0.89797 0.88056 0.90188 0.90748 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.72 10.56 -51.40 -0.54 -8.27 16 3 C 0.48 12.14 7.29 71.24 0.52 12.66 16 4 O -0.51 -15.61 16.26 28.38 0.46 -15.15 16 5 C 0.09 2.31 3.30 29.95 0.10 2.41 16 6 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 7 C 0.12 3.28 5.92 86.35 0.51 3.80 16 8 N -0.63 -20.20 3.02 -835.35 -2.52 -22.73 16 9 C 0.70 28.75 8.30 179.05 1.49 30.23 16 10 O -0.64 -30.64 15.81 -4.00 -0.06 -30.70 16 11 N -0.70 -28.96 5.23 -478.54 -2.51 -31.46 16 12 C 0.19 8.96 4.76 86.38 0.41 9.37 16 13 C 0.01 0.55 1.99 -52.93 -0.11 0.44 16 14 C -0.51 -24.45 8.28 25.60 0.21 -24.24 16 15 H 0.06 2.89 7.83 -2.91 -0.02 2.87 16 16 C 0.04 1.99 5.20 84.66 0.44 2.43 16 17 N -0.89 -47.38 10.70 21.45 0.23 -47.15 16 18 Si 0.94 39.36 29.55 68.60 2.03 41.39 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 20 H -0.30 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.20 -8.37 9.96 30.62 0.30 -8.07 16 23 C -0.18 -7.03 9.92 30.62 0.30 -6.72 16 24 C 0.07 1.69 6.57 86.35 0.57 2.26 16 25 C 0.06 1.08 6.98 72.08 0.50 1.58 16 26 O -0.37 -9.20 9.92 -129.97 -1.29 -10.49 16 27 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 28 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 29 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 3.23 7.06 -2.39 -0.02 3.22 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.40 15.35 5.50 -92.71 -0.51 14.84 16 33 H 0.02 0.96 8.06 -2.39 -0.02 0.94 16 34 H 0.07 3.84 5.99 -2.39 -0.01 3.83 16 35 H 0.26 13.53 8.32 -92.71 -0.77 12.76 16 36 H 0.07 2.95 8.14 -2.39 -0.02 2.94 16 37 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.10 2.44 5.79 -2.39 -0.01 2.43 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.17 357.64 2.76 -63.41 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.52 Total: 33.40 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 6.45 Total: 27.75 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -4.80 Total: -101.34 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -1.43 Total: -64.61 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -66.17 2.76 -63.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332225844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.793 kcal (2) G-P(sol) polarization free energy of solvation -66.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds