Wall clock time and date at job start Fri Apr 10 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46822 * 2 1 4 4 C 1.52993 * 109.47371 * 59.99720 * 3 2 1 5 5 O 1.42905 * 109.46898 * 65.00335 * 4 3 2 6 6 C 1.53006 * 109.47081 * 299.99566 * 3 2 1 7 7 O 1.42893 * 109.47533 * 300.00528 * 6 3 2 8 8 N 1.46500 * 109.47049 * 180.02562 * 3 2 1 9 9 C 1.34779 * 119.99738 * 179.97438 * 8 3 2 10 10 O 1.21589 * 120.00349 * 359.97438 * 9 8 3 11 11 N 1.34787 * 119.99663 * 179.97438 * 9 8 3 12 12 C 1.40196 * 119.99563 * 179.97438 * 11 9 8 13 13 C 1.40395 * 125.97533 * 359.97438 * 12 11 9 14 14 C 1.35243 * 107.86535 * 179.71691 * 13 12 11 15 15 N 1.34960 * 107.86064 * 0.42509 * 14 13 12 16 16 C 1.46500 * 125.97985 * 179.83521 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71356 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31213 * 125.96849 * 179.97438 * 12 11 9 26 26 H 1.09001 * 109.47263 * 60.00069 * 1 2 3 27 27 H 1.09000 * 109.46630 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46917 * 300.00110 * 1 2 3 29 29 H 1.08999 * 109.47318 * 240.00230 * 2 1 3 30 30 H 1.09001 * 109.47075 * 119.99410 * 2 1 3 31 31 H 1.09006 * 109.47419 * 184.99683 * 4 3 2 32 32 H 1.08993 * 109.47300 * 304.99926 * 4 3 2 33 33 H 0.96704 * 113.99468 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.46867 * 60.00722 * 6 3 2 35 35 H 1.09000 * 109.47446 * 179.97438 * 6 3 2 36 36 H 0.96701 * 114.00021 * 179.97438 * 7 6 3 37 37 H 0.96998 * 120.00159 * 359.97438 * 8 3 2 38 38 H 0.96998 * 119.99666 * 359.97438 * 11 9 8 39 39 H 1.08003 * 126.06887 * 0.02562 * 13 12 11 40 40 H 1.08007 * 126.06985 * 180.26350 * 14 13 12 41 41 H 1.09004 * 109.47078 * 4.72118 * 16 15 14 42 42 H 1.08993 * 109.47364 * 244.71890 * 16 15 14 43 43 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2491 5 8 2.0998 1.5614 2.4130 6 6 1.5300 2.1637 -1.2493 7 8 2.0063 1.4901 -2.4161 8 7 3.5050 1.4426 -0.0006 9 6 4.1788 2.6099 -0.0012 10 8 3.5708 3.6628 -0.0018 11 7 5.5266 2.6099 -0.0013 12 6 6.2275 3.8241 -0.0025 13 6 5.6558 5.1064 -0.0042 14 6 6.6624 6.0095 0.0014 15 7 7.8283 5.3298 -0.0030 16 6 9.1690 5.9205 -0.0028 17 6 9.9568 5.3781 1.1619 18 1 9.5041 4.6644 1.8343 19 6 11.2552 5.7929 1.3689 20 7 11.8081 6.6579 0.5469 21 14 12.2319 5.1200 2.8121 22 1 13.5928 5.7143 2.8089 23 1 11.5429 5.4675 4.0810 24 1 12.3362 3.6435 2.6937 25 7 7.5325 3.9607 -0.0022 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8183 3.2141 1.2055 32 1 0.4437 2.0869 1.2950 33 1 1.8200 1.9693 3.2440 34 1 0.4399 2.1638 -1.2493 35 1 1.8929 3.1916 -1.2492 36 1 1.7206 1.8934 -3.2472 37 1 3.9900 0.6026 -0.0006 38 1 6.0116 1.7699 -0.0005 39 1 4.5995 5.3316 -0.0045 40 1 6.5528 7.0840 0.0058 41 1 9.0887 7.0039 0.0861 42 1 9.6770 5.6690 -0.9337 43 1 11.3011 7.0071 -0.2026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341050842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:00 Heat of formation + Delta-G solvation = -72.337243 kcal Electronic energy + Delta-G solvation = -26426.653962 eV Core-core repulsion = 22508.089820 eV Total energy + Delta-G solvation = -3918.564142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.33240 -41.38404 -39.19290 -37.32121 -36.35994 -35.73245 -35.47991 -33.81169 -32.42195 -31.00044 -29.69029 -28.10982 -26.30320 -25.70042 -24.94461 -23.15137 -22.14109 -21.21487 -20.41866 -19.26954 -19.14548 -18.46699 -18.20328 -18.18004 -17.28787 -16.75732 -16.50103 -16.05168 -15.94161 -15.81737 -15.57003 -15.14535 -14.89575 -14.66478 -14.14222 -14.07172 -13.88914 -13.80665 -13.69000 -13.23230 -13.14384 -13.02520 -12.83126 -12.61289 -12.00762 -11.95428 -11.73924 -11.71056 -11.50023 -11.34899 -11.00761 -10.74302 -10.69288 -10.54659 -10.12235 -9.78599 -9.12608 -8.76560 -6.55725 1.00984 1.10414 1.50666 1.57332 1.68395 1.78913 2.03646 2.40894 2.48541 2.88560 3.00997 3.09048 3.71352 3.88083 3.88402 3.95700 4.15074 4.23677 4.33006 4.42094 4.52622 4.56915 4.60844 4.68569 4.70646 4.74277 4.79135 4.87740 4.95116 5.17001 5.18218 5.28643 5.36756 5.55090 5.60168 5.82045 5.86798 5.97568 6.28189 6.42758 6.71474 6.81392 6.86892 7.10207 7.20135 7.45472 8.58273 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.002739 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.874079 B =10218.642453 C =10659.604988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.198 3.802 4 C 0.063 3.937 5 O -0.578 6.578 6 C 0.063 3.937 7 O -0.577 6.577 8 N -0.705 5.705 9 C 0.720 3.280 10 O -0.594 6.594 11 N -0.641 5.641 12 C 0.289 3.711 13 C -0.286 4.286 14 C 0.054 3.946 15 N -0.346 5.346 16 C 0.260 3.740 17 C -0.621 4.621 18 H 0.044 0.956 19 C -0.019 4.019 20 N -0.923 5.923 21 Si 1.120 2.880 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.276 1.276 25 N -0.351 5.351 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.394 0.606 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.394 0.606 37 H 0.407 0.593 38 H 0.416 0.584 39 H 0.171 0.829 40 H 0.201 0.799 41 H 0.054 0.946 42 H 0.015 0.985 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.460 -11.748 -1.428 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.112 3.888 4 C -0.016 4.016 5 O -0.386 6.386 6 C -0.016 4.016 7 O -0.385 6.385 8 N -0.359 5.359 9 C 0.420 3.580 10 O -0.472 6.472 11 N -0.292 5.292 12 C 0.033 3.967 13 C -0.317 4.317 14 C -0.094 4.094 15 N -0.127 5.127 16 C 0.141 3.859 17 C -0.659 4.659 18 H 0.062 0.938 19 C -0.219 4.219 20 N -0.559 5.559 21 Si 0.941 3.059 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.201 1.201 25 N -0.182 5.182 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.243 0.757 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.244 0.756 37 H 0.242 0.758 38 H 0.253 0.747 39 H 0.189 0.811 40 H 0.218 0.782 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.811 -12.065 -0.703 26.703 hybrid contribution -1.898 0.554 -1.006 2.219 sum -25.710 -11.510 -1.709 28.221 Atomic orbital electron populations 1.21848 0.93130 1.03107 1.02455 1.21575 0.97882 0.92693 1.02916 1.20453 0.77604 0.97906 0.92847 1.22547 0.97663 0.96372 0.85041 1.86380 1.73855 1.61478 1.16861 1.22517 0.98564 0.95491 0.84995 1.86373 1.78251 1.57259 1.16618 1.44808 1.06734 1.06114 1.78283 1.15705 0.80050 0.85067 0.77227 1.90732 1.67297 1.31023 1.58183 1.41483 1.05076 1.05984 1.76629 1.19110 0.89752 0.87499 1.00330 1.21692 1.01083 0.89209 1.19738 1.23178 0.84631 1.00697 1.00920 1.48536 1.07146 1.02245 1.54823 1.19400 0.75857 0.93351 0.97304 1.22291 1.01195 1.29475 1.12970 0.93771 1.27283 0.96284 0.94443 1.03871 1.70945 1.40048 1.29424 1.15493 0.82882 0.75033 0.75919 0.72107 1.19889 1.19611 1.20150 1.77269 1.12781 0.97127 1.31072 0.91774 0.91207 0.91788 0.90830 0.90980 0.93416 0.90037 0.75667 0.90187 0.93321 0.75623 0.75761 0.74719 0.81134 0.78178 0.92799 0.96685 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.22 71.98 0.66 -0.79 16 2 C -0.11 -1.59 4.85 30.60 0.15 -1.44 16 3 C 0.20 3.61 0.40 3.60 0.00 3.62 16 4 C 0.06 1.12 5.42 71.98 0.39 1.51 16 5 O -0.58 -10.75 12.96 -148.98 -1.93 -12.68 16 6 C 0.06 1.11 5.38 71.98 0.39 1.49 16 7 O -0.58 -10.08 12.85 -148.98 -1.91 -12.00 16 8 N -0.71 -15.74 4.74 -437.99 -2.08 -17.82 16 9 C 0.72 21.65 7.95 179.05 1.42 23.07 16 10 O -0.59 -20.14 9.73 -4.00 -0.04 -20.18 16 11 N -0.64 -21.12 5.46 -321.22 -1.75 -22.88 16 12 C 0.29 12.09 8.11 133.31 1.08 13.17 16 13 C -0.29 -11.47 9.61 22.10 0.21 -11.26 16 14 C 0.05 2.17 11.44 83.52 0.96 3.13 16 15 N -0.35 -16.75 3.67 -351.84 -1.29 -18.04 16 16 C 0.26 13.71 5.57 85.64 0.48 14.18 16 17 C -0.62 -36.09 9.24 25.60 0.24 -35.86 16 18 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 19 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 20 N -0.92 -54.64 13.65 21.45 0.29 -54.35 16 21 Si 1.12 50.48 29.90 68.60 2.05 52.53 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 N -0.35 -17.08 12.42 -54.44 -0.68 -17.76 16 26 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.56 6.32 -2.39 -0.02 0.55 16 29 H 0.07 1.11 7.68 -2.39 -0.02 1.09 16 30 H 0.07 1.09 7.82 -2.39 -0.02 1.07 16 31 H 0.05 1.12 6.32 -2.38 -0.02 1.10 16 32 H 0.08 0.98 6.17 -2.39 -0.01 0.97 16 33 H 0.39 4.44 9.12 -74.05 -0.68 3.76 16 34 H 0.08 0.95 6.43 -2.38 -0.02 0.94 16 35 H 0.05 1.14 6.16 -2.39 -0.01 1.12 16 36 H 0.39 3.92 9.12 -74.06 -0.68 3.25 16 37 H 0.41 7.62 8.49 -92.71 -0.79 6.84 16 38 H 0.42 11.68 8.84 -92.71 -0.82 10.86 16 39 H 0.17 6.52 5.91 -2.91 -0.02 6.51 16 40 H 0.20 6.35 8.06 -2.91 -0.02 6.33 16 41 H 0.05 2.71 7.94 -2.39 -0.02 2.69 16 42 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 43 H 0.26 15.26 7.22 -92.71 -0.67 14.59 16 Total: -1.00 -77.34 351.32 -2.65 -79.99 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -1.75 Total: 32.98 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.44 Total: 10.20 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -5.50 Total: -130.84 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -3.88 Total: -44.86 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -77.34 -2.65 -79.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341050842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.655 kcal (2) G-P(sol) polarization free energy of solvation -77.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds