Wall clock time and date at job start Fri Apr 10 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.47046 * 2 1 4 4 C 1.34220 * 117.00173 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00092 * 179.97438 * 4 3 2 7 7 C 1.53004 * 112.85045 * 300.47331 * 6 4 3 8 8 C 1.50696 * 109.47080 * 293.97749 * 7 6 4 9 9 O 1.21283 * 119.99885 * 354.79819 * 8 7 6 10 10 N 1.34773 * 120.00004 * 174.79416 * 8 7 6 11 11 C 1.46505 * 120.00249 * 180.02562 * 10 8 7 12 12 C 1.50691 * 109.47417 * 180.02562 * 11 10 8 13 13 O 1.21295 * 119.99925 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00431 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00460 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99696 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99895 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00139 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99560 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47177 * 60.00169 * 19 17 15 21 21 H 1.48496 * 109.46662 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47078 * 299.99754 * 19 17 15 23 23 C 1.53783 * 113.69088 * 71.73964 * 6 4 3 24 24 C 1.53775 * 87.08053 * 89.12691 * 23 6 4 25 25 C 1.53776 * 87.08375 * 25.43327 * 24 23 6 26 26 H 1.09007 * 109.46913 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47409 * 299.99455 * 1 2 3 28 28 H 1.08998 * 109.47465 * 59.99989 * 1 2 3 29 29 H 1.08997 * 109.47409 * 240.00545 * 2 1 3 30 30 H 1.08998 * 109.47465 * 120.00011 * 2 1 3 31 31 H 1.09005 * 109.46945 * 173.98051 * 7 6 4 32 32 H 1.09002 * 109.47024 * 53.97959 * 7 6 4 33 33 H 0.97005 * 120.00278 * 0.02562 * 10 8 7 34 34 H 1.09006 * 109.46620 * 300.00311 * 11 10 8 35 35 H 1.09001 * 109.47226 * 59.99221 * 11 10 8 36 36 H 0.97003 * 119.99796 * 0.02562 * 14 12 11 37 37 H 0.96999 * 119.99759 * 180.02562 * 18 17 15 38 38 H 1.08996 * 113.61926 * 203.67876 * 23 6 4 39 39 H 1.09007 * 113.61222 * 334.58147 * 23 6 4 40 40 H 1.09003 * 113.61756 * 270.88228 * 24 23 6 41 41 H 1.09006 * 113.61800 * 139.98463 * 24 23 6 42 42 H 1.08996 * 113.61927 * 220.01578 * 25 24 23 43 43 H 1.09009 * 113.61433 * 89.10949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.4875 3.7592 -1.2159 8 6 4.0712 3.1526 -2.4658 9 8 4.8407 2.2186 -2.3843 10 7 3.7381 3.6478 -3.6742 11 6 4.3051 3.0578 -4.8894 12 6 3.7771 3.7891 -6.0965 13 8 3.0028 4.7121 -5.9557 14 7 4.1651 3.4176 -7.3326 15 6 3.6843 4.0826 -8.4309 16 1 2.9949 4.9044 -8.3055 17 6 4.0839 3.6992 -9.7052 18 7 4.9231 2.6995 -9.8577 19 14 3.4282 4.6049 -11.2017 20 1 3.8121 6.0371 -11.1210 21 1 4.0036 4.0073 -12.4333 22 1 1.9482 4.4905 -11.2403 23 6 3.7483 3.6780 1.3368 24 6 5.0935 3.0645 1.7598 25 6 5.4352 2.9778 0.2630 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8446 4.7834 -1.1082 32 1 2.3997 3.7590 -1.2857 33 1 3.1229 4.3950 -3.7394 34 1 5.3916 3.1412 -4.8609 35 1 4.0230 2.0066 -4.9487 36 1 4.7839 2.6792 -7.4452 37 1 5.2024 2.4321 -10.7473 38 1 3.7742 4.7634 1.2413 39 1 2.9024 3.3239 1.9262 40 1 4.9974 2.0921 2.2427 41 1 5.7320 3.7523 2.3143 42 1 5.9512 2.0588 -0.0147 43 1 5.9222 3.8720 -0.1263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343518821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:03 Heat of formation + Delta-G solvation = -147.634323 kcal Electronic energy + Delta-G solvation = -26103.236914 eV Core-core repulsion = 22149.114894 eV Total energy + Delta-G solvation = -3954.122020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30918 -39.51496 -38.54277 -37.86985 -36.37226 -34.44883 -33.66359 -31.98908 -31.42770 -30.94240 -27.71619 -25.94811 -25.37572 -24.33317 -23.21867 -21.97040 -20.20920 -19.60757 -19.43837 -18.14882 -17.44693 -16.98071 -16.73825 -16.45719 -15.69854 -15.43388 -15.36629 -14.96690 -14.47136 -14.43857 -14.13487 -14.03685 -13.80608 -13.35195 -13.23942 -12.97549 -12.65707 -12.46516 -12.20761 -12.11534 -11.91852 -11.73431 -11.72383 -11.64279 -11.15707 -11.11368 -10.73962 -10.64023 -10.53668 -10.51738 -10.32600 -10.26550 -9.63999 -9.63059 -8.79479 -8.64734 -8.11614 -6.52583 -3.94857 2.20241 2.51016 2.81093 3.12761 3.20287 3.22475 3.32008 3.72681 4.08924 4.18916 4.27216 4.43218 4.55131 4.69540 4.73757 4.80333 4.86975 5.06177 5.07623 5.13126 5.15930 5.30983 5.38635 5.47530 5.49474 5.55737 5.58088 5.66091 5.76048 5.88092 5.91089 5.95715 6.04824 6.06587 6.19817 6.40996 6.67252 7.44523 7.77287 7.78879 7.90460 8.41766 8.45840 9.03074 9.37857 9.85674 10.64225 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002701 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.317150 B =10364.913815 C =10983.478771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.489 3.511 5 O -0.487 6.487 6 C -0.062 4.062 7 C -0.125 4.125 8 C 0.502 3.498 9 O -0.535 6.535 10 N -0.707 5.707 11 C 0.109 3.891 12 C 0.428 3.572 13 O -0.598 6.598 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.120 4.120 24 C -0.149 4.149 25 C -0.106 4.106 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.411 0.589 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.396 0.604 37 H 0.275 0.725 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 -0.833 21.969 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.330 3.670 5 O -0.372 6.372 6 C -0.064 4.064 7 C -0.165 4.165 8 C 0.288 3.712 9 O -0.412 6.412 10 N -0.362 5.362 11 C -0.018 4.018 12 C 0.213 3.787 13 O -0.485 6.485 14 N -0.183 5.183 15 C -0.436 4.436 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.158 4.158 24 C -0.186 4.186 25 C -0.143 4.143 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.249 0.751 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.842 -1.321 21.890 22.264 hybrid contribution -0.223 0.069 -1.132 1.156 sum -4.065 -1.252 20.758 21.190 Atomic orbital electron populations 1.21803 0.92574 1.02961 1.03562 1.23015 0.95345 0.80276 1.02583 1.86464 1.24566 1.32313 1.84314 1.22728 0.80371 0.91513 0.72353 1.90645 1.60371 1.42408 1.43788 1.21339 0.98954 0.89615 0.96465 1.21658 1.03390 1.00529 0.90945 1.20536 0.82066 0.83874 0.84764 1.90766 1.35358 1.28101 1.87001 1.45710 1.48654 1.37057 1.04741 1.20935 0.98946 0.97762 0.84177 1.19745 0.86834 0.87654 0.84439 1.90491 1.39691 1.32712 1.85584 1.41796 1.40945 1.31311 1.04261 1.19685 1.25730 1.14777 0.83394 0.87712 1.25331 0.96419 0.96613 0.99312 1.69606 1.32290 1.26866 1.24699 0.85869 0.79112 0.79360 0.79607 1.19756 1.20839 1.19759 1.23028 0.98758 1.00541 0.93425 1.22962 0.96966 1.01334 0.97343 1.22859 0.92422 1.04387 0.94660 0.90275 0.91556 0.91284 0.91158 0.91421 0.87135 0.87770 0.75146 0.89867 0.90024 0.77034 0.91505 0.88257 0.90586 0.90178 0.90623 0.89022 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.78 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.36 -4.49 10.21 -39.23 -0.40 -4.89 16 4 C 0.49 6.84 5.63 36.01 0.20 7.04 16 5 O -0.49 -8.26 15.55 -18.91 -0.29 -8.55 16 6 C -0.06 -0.70 0.70 -154.85 -0.11 -0.81 16 7 C -0.13 -1.36 5.13 -27.88 -0.14 -1.50 16 8 C 0.50 7.71 7.47 -10.99 -0.08 7.63 16 9 O -0.54 -9.97 14.33 5.56 0.08 -9.89 16 10 N -0.71 -11.56 5.53 -61.47 -0.34 -11.90 16 11 C 0.11 2.04 6.15 -5.20 -0.03 2.00 16 12 C 0.43 9.80 7.85 -10.99 -0.09 9.72 16 13 O -0.60 -15.18 15.24 5.54 0.08 -15.09 16 14 N -0.55 -13.65 5.29 -10.97 -0.06 -13.70 16 15 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 16 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 18 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 19 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.12 -0.95 7.22 -25.92 -0.19 -1.14 16 24 C -0.15 -1.30 7.80 -25.92 -0.20 -1.50 16 25 C -0.11 -1.20 5.82 -25.92 -0.15 -1.35 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.11 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.41 6.47 7.44 -40.82 -0.30 6.17 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.52 7.90 -40.82 -0.32 9.19 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.10 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.31 7.24 -51.93 -0.38 0.94 16 43 H 0.09 0.92 8.10 -51.92 -0.42 0.50 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -33.34 367.26 -6.53 -39.86 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.42 Total: 14.08 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -0.42 Total: 12.30 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.33 Total: -48.83 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.53 Total: -38.43 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.34 -6.53 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.771 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds