Wall clock time and date at job start Fri Apr 10 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.47046 * 2 1 4 4 C 1.34220 * 117.00173 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00092 * 179.97438 * 4 3 2 7 7 C 1.53004 * 112.85045 * 300.47331 * 6 4 3 8 8 C 1.50696 * 109.47080 * 293.97749 * 7 6 4 9 9 O 1.21283 * 119.99885 * 354.79819 * 8 7 6 10 10 N 1.34773 * 120.00004 * 174.79416 * 8 7 6 11 11 C 1.46505 * 120.00249 * 180.02562 * 10 8 7 12 12 C 1.50691 * 109.47417 * 180.02562 * 11 10 8 13 13 O 1.21295 * 119.99925 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00431 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00460 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99696 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99895 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00139 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99560 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47177 * 60.00169 * 19 17 15 21 21 H 1.48496 * 109.46662 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47078 * 299.99754 * 19 17 15 23 23 C 1.53783 * 113.69088 * 71.73964 * 6 4 3 24 24 C 1.53775 * 87.08053 * 89.12691 * 23 6 4 25 25 C 1.53776 * 87.08375 * 25.43327 * 24 23 6 26 26 H 1.09007 * 109.46913 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47409 * 299.99455 * 1 2 3 28 28 H 1.08998 * 109.47465 * 59.99989 * 1 2 3 29 29 H 1.08997 * 109.47409 * 240.00545 * 2 1 3 30 30 H 1.08998 * 109.47465 * 120.00011 * 2 1 3 31 31 H 1.09005 * 109.46945 * 173.98051 * 7 6 4 32 32 H 1.09002 * 109.47024 * 53.97959 * 7 6 4 33 33 H 0.97005 * 120.00278 * 0.02562 * 10 8 7 34 34 H 1.09006 * 109.46620 * 300.00311 * 11 10 8 35 35 H 1.09001 * 109.47226 * 59.99221 * 11 10 8 36 36 H 0.97003 * 119.99796 * 0.02562 * 14 12 11 37 37 H 0.96999 * 119.99759 * 180.02562 * 18 17 15 38 38 H 1.08996 * 113.61926 * 203.67876 * 23 6 4 39 39 H 1.09007 * 113.61222 * 334.58147 * 23 6 4 40 40 H 1.09003 * 113.61756 * 270.88228 * 24 23 6 41 41 H 1.09006 * 113.61800 * 139.98463 * 24 23 6 42 42 H 1.08996 * 113.61927 * 220.01578 * 25 24 23 43 43 H 1.09009 * 113.61433 * 89.10949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.4875 3.7592 -1.2159 8 6 4.0712 3.1526 -2.4658 9 8 4.8407 2.2186 -2.3843 10 7 3.7381 3.6478 -3.6742 11 6 4.3051 3.0578 -4.8894 12 6 3.7771 3.7891 -6.0965 13 8 3.0028 4.7121 -5.9557 14 7 4.1651 3.4176 -7.3326 15 6 3.6843 4.0826 -8.4309 16 1 2.9949 4.9044 -8.3055 17 6 4.0839 3.6992 -9.7052 18 7 4.9231 2.6995 -9.8577 19 14 3.4282 4.6049 -11.2017 20 1 3.8121 6.0371 -11.1210 21 1 4.0036 4.0073 -12.4333 22 1 1.9482 4.4905 -11.2403 23 6 3.7483 3.6780 1.3368 24 6 5.0935 3.0645 1.7598 25 6 5.4352 2.9778 0.2630 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8446 4.7834 -1.1082 32 1 2.3997 3.7590 -1.2857 33 1 3.1229 4.3950 -3.7394 34 1 5.3916 3.1412 -4.8609 35 1 4.0230 2.0066 -4.9487 36 1 4.7839 2.6792 -7.4452 37 1 5.2024 2.4321 -10.7473 38 1 3.7742 4.7634 1.2413 39 1 2.9024 3.3239 1.9262 40 1 4.9974 2.0921 2.2427 41 1 5.7320 3.7523 2.3143 42 1 5.9512 2.0588 -0.0147 43 1 5.9222 3.8720 -0.1263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343518821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:03 Heat of formation + Delta-G solvation = -170.965960 kcal Electronic energy + Delta-G solvation = -26104.248650 eV Core-core repulsion = 22149.114894 eV Total energy + Delta-G solvation = -3955.133756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.29219 -40.86948 -39.99212 -39.09243 -37.43884 -36.25446 -35.27109 -33.40125 -32.77449 -31.92733 -29.21820 -26.89924 -26.55290 -25.80615 -24.05517 -22.86446 -21.44460 -21.39138 -20.35352 -20.08622 -18.69388 -18.17617 -17.74364 -17.50405 -17.13196 -16.91518 -16.76958 -16.29119 -15.89744 -15.66899 -15.58422 -15.25374 -14.92012 -14.65191 -14.22772 -13.95008 -13.74891 -13.72403 -13.54915 -13.30232 -13.13550 -12.93857 -12.88997 -12.65297 -12.53097 -12.48295 -12.14438 -11.93673 -11.57236 -11.56930 -11.55829 -11.39558 -11.19100 -10.85012 -10.57261 -10.20166 -10.09571 -8.52224 -6.02938 1.16147 1.37261 1.42074 1.53258 1.59363 1.62003 1.89502 2.02061 2.31253 3.10463 3.14835 3.32286 3.47031 3.60925 3.72743 3.89083 3.94390 4.04089 4.07760 4.23433 4.28812 4.35893 4.40209 4.42476 4.54424 4.65884 4.80412 4.84819 4.87474 4.89158 5.06155 5.10911 5.14256 5.19514 5.28545 5.37015 5.38523 5.50850 5.90037 6.44230 6.53858 6.74416 7.01586 7.19110 7.42581 7.91881 8.64543 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002701 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.317150 B =10364.913815 C =10983.478771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.483 3.517 5 O -0.529 6.529 6 C -0.074 4.074 7 C -0.117 4.117 8 C 0.500 3.500 9 O -0.572 6.572 10 N -0.707 5.707 11 C 0.122 3.878 12 C 0.433 3.567 13 O -0.621 6.621 14 N -0.560 5.560 15 C -0.339 4.339 16 H 0.088 0.912 17 C -0.011 4.011 18 N -0.918 5.918 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.269 1.269 23 C -0.099 4.099 24 C -0.143 4.143 25 C -0.114 4.114 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.416 0.584 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.398 0.602 37 H 0.280 0.720 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 0.875 23.054 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.326 3.674 5 O -0.417 6.417 6 C -0.075 4.075 7 C -0.156 4.156 8 C 0.287 3.713 9 O -0.451 6.451 10 N -0.362 5.362 11 C -0.006 4.006 12 C 0.220 3.780 13 O -0.509 6.509 14 N -0.195 5.195 15 C -0.468 4.468 16 H 0.106 0.894 17 C -0.212 4.212 18 N -0.558 5.558 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.136 4.136 24 C -0.180 4.180 25 C -0.151 4.151 26 H 0.116 0.884 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.141 0.859 33 H 0.254 0.746 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.231 0.769 37 H 0.089 0.911 38 H 0.151 0.849 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.952 0.394 23.001 23.531 hybrid contribution 0.127 -0.534 -1.417 1.520 sum -4.825 -0.140 21.583 22.116 Atomic orbital electron populations 1.21810 0.89978 1.04378 1.03900 1.23243 0.97360 0.79545 1.01929 1.86472 1.23911 1.33268 1.83847 1.23441 0.80493 0.92390 0.71053 1.90624 1.61277 1.44016 1.45831 1.21550 0.98777 0.88572 0.98619 1.21778 1.04246 1.01813 0.87802 1.21400 0.81233 0.83155 0.85469 1.90771 1.37070 1.29783 1.87456 1.45740 1.48828 1.37253 1.04360 1.20705 0.99278 0.97273 0.83353 1.20383 0.85628 0.86979 0.84968 1.90466 1.40530 1.33759 1.86158 1.41864 1.41465 1.31586 1.04632 1.19732 1.26796 1.15440 0.84814 0.89370 1.26160 0.96273 0.97167 1.01571 1.69680 1.32816 1.27670 1.25608 0.84914 0.78548 0.78238 0.76220 1.19320 1.19715 1.19391 1.23067 0.98188 1.01967 0.90420 1.22918 0.98137 1.01318 0.95651 1.22900 0.92311 1.03000 0.96894 0.88360 0.90290 0.91751 0.93051 0.90984 0.83225 0.85944 0.74583 0.89055 0.89789 0.76854 0.91059 0.84857 0.89835 0.91810 0.88215 0.93160 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 10.29 71.98 0.74 -1.26 16 2 C 0.05 1.12 6.19 71.98 0.45 1.56 16 3 O -0.36 -8.73 10.21 -51.32 -0.52 -9.25 16 4 C 0.48 13.48 5.63 71.24 0.40 13.88 16 5 O -0.53 -18.81 15.55 22.12 0.34 -18.46 16 6 C -0.07 -1.54 0.70 -52.40 -0.04 -1.57 16 7 C -0.12 -2.22 5.13 29.85 0.15 -2.07 16 8 C 0.50 14.81 7.47 87.66 0.66 15.47 16 9 O -0.57 -21.51 14.33 -3.04 -0.04 -21.55 16 10 N -0.71 -22.41 5.53 -466.79 -2.58 -24.99 16 11 C 0.12 4.52 6.15 85.63 0.53 5.05 16 12 C 0.43 19.99 7.85 87.65 0.69 20.68 16 13 O -0.62 -31.58 15.24 -3.08 -0.05 -31.63 16 14 N -0.56 -28.33 5.29 -306.99 -1.62 -29.95 16 15 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 16 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 17 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 18 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 19 Si 1.00 41.62 29.55 68.60 2.03 43.65 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.10 -1.23 7.22 31.12 0.22 -1.00 16 24 C -0.14 -2.23 7.80 31.12 0.24 -1.98 16 25 C -0.11 -2.47 5.82 31.12 0.18 -2.29 16 26 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.15 1.72 8.05 -2.38 -0.02 1.70 16 32 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.42 12.51 7.44 -92.70 -0.69 11.82 16 34 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 37 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.13 0.81 8.04 -2.39 -0.02 0.79 16 39 H 0.08 0.96 8.10 -2.38 -0.02 0.94 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.05 1.51 7.24 -2.39 -0.02 1.50 16 43 H 0.11 1.94 8.10 -2.38 -0.02 1.92 16 Total: -1.00 -74.44 367.26 2.96 -71.48 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -0.38 Total: 41.06 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 5.50 Total: 28.51 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -3.92 Total: -103.81 kcal Atomic # 8 Polarization: -80.63 SS G_CDS: -0.27 Total: -80.90 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -74.44 2.96 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.483 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds