Wall clock time and date at job start Fri Apr 10 2020 18:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99576 * 2 1 4 4 O 1.20833 * 120.00306 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00150 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.47343 * 60.00305 * 5 3 2 7 7 C 1.53000 * 109.47381 * 300.00422 * 5 3 2 8 8 C 1.53000 * 109.47286 * 180.02562 * 7 5 3 9 9 C 1.52994 * 109.47517 * 59.99563 * 8 7 5 10 10 C 1.53000 * 109.47199 * 300.00490 * 9 8 7 11 11 H 1.08997 * 109.46749 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46711 * 299.99712 * 10 9 8 13 13 O 1.21285 * 120.00043 * 120.00475 * 12 10 9 14 14 N 1.34779 * 120.00162 * 300.00046 * 12 10 9 15 15 C 1.46497 * 120.00021 * 180.02562 * 14 12 10 16 16 C 1.50700 * 109.47124 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99931 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99961 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99504 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00446 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99362 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00245 * 359.71960 * 21 19 18 23 23 Si 1.86803 * 119.99625 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47228 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47000 * 119.99583 * 23 21 19 26 26 H 1.48493 * 109.46907 * 239.99475 * 23 21 19 27 27 C 1.52992 * 109.47194 * 59.99546 * 10 9 8 28 28 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47710 * 299.99738 * 1 2 3 30 30 H 1.08999 * 109.47092 * 60.00224 * 1 2 3 31 31 H 1.09000 * 109.47446 * 59.99763 * 7 5 3 32 32 H 1.08998 * 109.47094 * 299.99654 * 7 5 3 33 33 H 1.09008 * 109.46856 * 299.99277 * 8 7 5 34 34 H 1.08997 * 109.46945 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47051 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46887 * 60.00359 * 9 8 7 37 37 H 0.97000 * 120.00236 * 359.97438 * 14 12 10 38 38 H 1.09004 * 109.47608 * 59.99757 * 15 14 12 39 39 H 1.09005 * 109.46979 * 299.99880 * 15 14 12 40 40 H 0.96999 * 120.00044 * 359.97438 * 18 16 15 41 41 H 0.97000 * 120.00281 * 180.02562 * 22 21 19 42 42 H 1.09006 * 109.47559 * 60.00099 * 27 10 9 43 43 H 1.09002 * 109.47234 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9564 0.7808 -0.8892 7 6 4.1129 0.5817 1.2501 8 6 5.6407 0.6625 1.2510 9 6 6.0739 2.1299 1.2512 10 6 5.5272 2.8232 0.0017 11 1 5.8355 3.8687 0.0021 12 6 6.0671 2.1402 -1.2284 13 8 5.3048 1.6384 -2.0273 14 7 7.3969 2.0872 -1.4410 15 6 7.9216 1.4237 -2.6371 16 6 9.4265 1.5037 -2.6365 17 8 10.0039 2.0605 -1.7267 18 7 10.1309 0.9564 -3.6470 19 6 11.4999 1.0287 -3.6461 20 1 12.0140 1.5245 -2.8360 21 6 12.2260 0.4650 -4.6881 22 7 11.6007 -0.1422 -5.6715 23 14 14.0914 0.5641 -4.6874 24 1 14.5480 1.2896 -3.4749 25 1 14.6600 -0.8077 -4.6874 26 1 14.5490 1.2896 -5.8995 27 6 3.9995 2.7424 0.0008 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.8039 -0.4636 1.2502 32 1 3.7228 1.0759 2.1399 33 1 6.0312 0.1685 0.3612 34 1 6.0301 0.1682 2.1410 35 1 7.1625 2.1873 1.2523 36 1 5.6835 2.6238 2.1410 37 1 8.0066 2.4889 -0.8024 38 1 7.5323 1.9180 -3.5272 39 1 7.6129 0.3783 -2.6376 40 1 9.6691 0.5108 -4.3744 41 1 12.1076 -0.5361 -6.3988 42 1 3.6089 3.2364 0.8906 43 1 3.6100 3.2360 -0.8896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344178319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:06 Heat of formation + Delta-G solvation = -181.559173 kcal Electronic energy + Delta-G solvation = -26190.270396 eV Core-core repulsion = 22234.677284 eV Total energy + Delta-G solvation = -3955.593112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09978 -40.04225 -38.41100 -37.19042 -36.43854 -34.54121 -33.77829 -31.86306 -31.37464 -31.03835 -28.07269 -27.58198 -24.75224 -24.13767 -23.14072 -21.59021 -20.60871 -19.77586 -19.26030 -18.10156 -17.70034 -17.07172 -16.71197 -16.49425 -15.70166 -15.46228 -15.34609 -15.10624 -14.53349 -14.35678 -14.19992 -14.05249 -13.65070 -13.44812 -13.27414 -12.88582 -12.68683 -12.38636 -12.26537 -12.22311 -12.06889 -11.92590 -11.66027 -11.30889 -11.16296 -11.09940 -10.98002 -10.81060 -10.43159 -10.38498 -10.34824 -10.23894 -9.67468 -9.49751 -8.81305 -8.66491 -8.13067 -6.54243 -3.96296 2.11355 2.58467 2.76536 3.08291 3.20347 3.25738 3.35013 3.70957 4.08967 4.35912 4.47989 4.54443 4.79286 4.84680 4.88195 4.90709 4.96311 4.99105 5.05597 5.14367 5.18440 5.28509 5.30554 5.41708 5.51978 5.69490 5.78965 5.85257 5.87525 5.92818 5.98236 5.99237 6.04381 6.09362 6.19147 6.27376 6.66272 7.43627 7.63486 7.76729 7.89419 8.39146 8.43470 9.01959 9.36431 9.83997 10.62671 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.002514 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.229726 B =11136.058184 C =11532.364279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.513 6.513 5 C -0.093 4.093 6 H 0.140 0.860 7 C -0.108 4.108 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.107 4.107 11 H 0.105 0.895 12 C 0.517 3.483 13 O -0.548 6.548 14 N -0.704 5.704 15 C 0.107 3.893 16 C 0.428 3.572 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.079 4.079 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.076 0.924 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.935 0.656 12.401 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.401 6.401 5 C -0.112 4.112 6 H 0.157 0.843 7 C -0.146 4.146 8 C -0.159 4.159 9 C -0.153 4.153 10 C -0.128 4.128 11 H 0.123 0.877 12 C 0.303 3.697 13 O -0.427 6.427 14 N -0.358 5.358 15 C -0.020 4.020 16 C 0.213 3.787 17 O -0.484 6.484 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.534 5.534 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.117 4.117 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.249 0.751 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.205 0.851 12.242 21.133 hybrid contribution 0.703 -0.034 -0.418 0.818 sum -16.502 0.817 11.824 20.318 Atomic orbital electron populations 1.23241 0.76762 1.03550 1.02403 1.86533 1.23106 1.33766 1.84091 1.23980 0.92189 0.81067 0.71439 1.90638 1.67358 1.36404 1.45679 1.21461 0.86274 0.99844 1.03616 0.84316 1.21524 0.96204 1.01006 0.95860 1.21573 0.94760 0.96543 1.03069 1.21603 1.01415 0.95795 0.96462 1.21376 0.96453 1.01371 0.93647 0.87708 1.20519 0.82058 0.79890 0.87242 1.90600 1.57095 1.47683 1.47340 1.45749 1.06962 1.57708 1.25351 1.20963 0.93708 0.98680 0.88668 1.19752 0.87966 0.85666 0.85293 1.90496 1.70925 1.49246 1.37762 1.41814 1.07347 1.48604 1.20617 1.19778 0.80867 1.34780 1.07977 0.87612 1.25334 1.01039 0.96213 0.95165 1.69618 1.36883 1.36198 1.10744 0.85758 0.81783 0.78077 0.78481 1.19123 1.20594 1.20607 1.21184 0.92740 0.94054 1.03739 0.88207 0.92078 0.91967 0.90587 0.91601 0.91258 0.90832 0.90556 0.90513 0.75078 0.89875 0.89852 0.77046 0.91612 0.90506 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.07 10.47 -39.26 -0.41 -4.48 16 3 C 0.47 5.93 7.26 36.00 0.26 6.19 16 4 O -0.51 -7.52 15.73 -18.76 -0.29 -7.82 16 5 C -0.09 -1.08 2.33 -91.77 -0.21 -1.30 16 6 H 0.14 1.90 5.51 -51.93 -0.29 1.61 16 7 C -0.11 -1.02 5.14 -26.73 -0.14 -1.15 16 8 C -0.12 -1.15 5.70 -26.73 -0.15 -1.31 16 9 C -0.12 -1.03 5.35 -26.73 -0.14 -1.17 16 10 C -0.11 -1.13 3.01 -91.78 -0.28 -1.41 16 11 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 12 C 0.52 7.32 5.64 -10.99 -0.06 7.25 16 13 O -0.55 -9.20 13.66 5.55 0.08 -9.12 16 14 N -0.70 -10.81 5.42 -61.47 -0.33 -11.14 16 15 C 0.11 1.89 6.15 -5.20 -0.03 1.86 16 16 C 0.43 9.49 7.85 -10.98 -0.09 9.41 16 17 O -0.60 -14.81 15.24 5.55 0.08 -14.73 16 18 N -0.55 -13.34 5.29 -10.96 -0.06 -13.39 16 19 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 20 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.63 13.05 55.50 0.72 -22.90 16 23 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.08 -0.88 3.66 -26.74 -0.10 -0.98 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.08 0.69 8.11 -51.93 -0.42 0.26 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.79 7.22 -51.92 -0.37 0.42 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.70 7.57 -51.93 -0.39 0.30 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.41 6.21 6.86 -40.82 -0.28 5.93 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.40 9.27 7.90 -40.82 -0.32 8.94 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -31.73 355.61 -6.22 -37.95 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.23 Total: 14.02 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -0.11 Total: 11.00 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.33 Total: -47.43 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.55 Total: -36.15 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.73 -6.22 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344178319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.611 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds