Wall clock time and date at job start Fri Apr 10 2020 18:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99576 * 2 1 4 4 O 1.20833 * 120.00306 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00150 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.47343 * 60.00305 * 5 3 2 7 7 C 1.53000 * 109.47381 * 300.00422 * 5 3 2 8 8 C 1.53000 * 109.47286 * 180.02562 * 7 5 3 9 9 C 1.52994 * 109.47517 * 59.99563 * 8 7 5 10 10 C 1.53000 * 109.47199 * 300.00490 * 9 8 7 11 11 H 1.08997 * 109.46749 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46711 * 299.99712 * 10 9 8 13 13 O 1.21285 * 120.00043 * 120.00475 * 12 10 9 14 14 N 1.34779 * 120.00162 * 300.00046 * 12 10 9 15 15 C 1.46497 * 120.00021 * 180.02562 * 14 12 10 16 16 C 1.50700 * 109.47124 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99931 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99961 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99504 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00446 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99362 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00245 * 359.71960 * 21 19 18 23 23 Si 1.86803 * 119.99625 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47228 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47000 * 119.99583 * 23 21 19 26 26 H 1.48493 * 109.46907 * 239.99475 * 23 21 19 27 27 C 1.52992 * 109.47194 * 59.99546 * 10 9 8 28 28 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47710 * 299.99738 * 1 2 3 30 30 H 1.08999 * 109.47092 * 60.00224 * 1 2 3 31 31 H 1.09000 * 109.47446 * 59.99763 * 7 5 3 32 32 H 1.08998 * 109.47094 * 299.99654 * 7 5 3 33 33 H 1.09008 * 109.46856 * 299.99277 * 8 7 5 34 34 H 1.08997 * 109.46945 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47051 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46887 * 60.00359 * 9 8 7 37 37 H 0.97000 * 120.00236 * 359.97438 * 14 12 10 38 38 H 1.09004 * 109.47608 * 59.99757 * 15 14 12 39 39 H 1.09005 * 109.46979 * 299.99880 * 15 14 12 40 40 H 0.96999 * 120.00044 * 359.97438 * 18 16 15 41 41 H 0.97000 * 120.00281 * 180.02562 * 22 21 19 42 42 H 1.09006 * 109.47559 * 60.00099 * 27 10 9 43 43 H 1.09002 * 109.47234 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9564 0.7808 -0.8892 7 6 4.1129 0.5817 1.2501 8 6 5.6407 0.6625 1.2510 9 6 6.0739 2.1299 1.2512 10 6 5.5272 2.8232 0.0017 11 1 5.8355 3.8687 0.0021 12 6 6.0671 2.1402 -1.2284 13 8 5.3048 1.6384 -2.0273 14 7 7.3969 2.0872 -1.4410 15 6 7.9216 1.4237 -2.6371 16 6 9.4265 1.5037 -2.6365 17 8 10.0039 2.0605 -1.7267 18 7 10.1309 0.9564 -3.6470 19 6 11.4999 1.0287 -3.6461 20 1 12.0140 1.5245 -2.8360 21 6 12.2260 0.4650 -4.6881 22 7 11.6007 -0.1422 -5.6715 23 14 14.0914 0.5641 -4.6874 24 1 14.5480 1.2896 -3.4749 25 1 14.6600 -0.8077 -4.6874 26 1 14.5490 1.2896 -5.8995 27 6 3.9995 2.7424 0.0008 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.8039 -0.4636 1.2502 32 1 3.7228 1.0759 2.1399 33 1 6.0312 0.1685 0.3612 34 1 6.0301 0.1682 2.1410 35 1 7.1625 2.1873 1.2523 36 1 5.6835 2.6238 2.1410 37 1 8.0066 2.4889 -0.8024 38 1 7.5323 1.9180 -3.5272 39 1 7.6129 0.3783 -2.6376 40 1 9.6691 0.5108 -4.3744 41 1 12.1076 -0.5361 -6.3988 42 1 3.6089 3.2364 0.8906 43 1 3.6100 3.2360 -0.8896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344178319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:05 Heat of formation + Delta-G solvation = -203.345970 kcal Electronic energy + Delta-G solvation = -26191.215142 eV Core-core repulsion = 22234.677284 eV Total energy + Delta-G solvation = -3956.537858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.07595 -41.13972 -40.11653 -38.22548 -37.39484 -36.24199 -35.33693 -33.38518 -32.72289 -31.86667 -29.32660 -28.55699 -26.53465 -24.97584 -24.16868 -22.49380 -21.58238 -21.34116 -20.56397 -19.98789 -18.66564 -18.10863 -17.85980 -17.40206 -17.16632 -16.91332 -16.65535 -16.31278 -16.01546 -15.65389 -15.53195 -15.15884 -14.79027 -14.66067 -14.17824 -13.93611 -13.75926 -13.60064 -13.54861 -13.45204 -13.10627 -13.02911 -12.92515 -12.88929 -12.43976 -12.16869 -12.10909 -11.89962 -11.82536 -11.70786 -11.57166 -11.18540 -11.10990 -10.63079 -10.53636 -10.14148 -10.05310 -8.50794 -6.00743 1.14275 1.35473 1.43417 1.57270 1.63331 1.76711 1.92257 2.07138 2.33268 3.14465 3.16684 3.52351 3.62057 3.68378 3.91990 4.09009 4.15176 4.22152 4.25274 4.29616 4.31011 4.37825 4.44861 4.46101 4.48799 4.63845 4.68423 4.73291 4.96125 5.01324 5.10515 5.15444 5.23227 5.26980 5.33631 5.38081 5.39211 5.46559 5.92791 6.47134 6.58026 6.69925 7.04321 7.22318 7.45704 7.95254 8.66384 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.002514 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.229726 B =11136.058184 C =11532.364279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.470 3.530 4 O -0.538 6.538 5 C -0.094 4.094 6 H 0.116 0.884 7 C -0.102 4.102 8 C -0.122 4.122 9 C -0.112 4.112 10 C -0.099 4.099 11 H 0.127 0.873 12 C 0.517 3.483 13 O -0.576 6.576 14 N -0.705 5.705 15 C 0.120 3.880 16 C 0.434 3.566 17 O -0.622 6.622 18 N -0.562 5.562 19 C -0.334 4.334 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.996 3.004 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.076 4.076 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.414 0.586 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.398 0.602 41 H 0.279 0.721 42 H 0.094 0.906 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.143 0.703 13.821 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.112 4.112 6 H 0.134 0.866 7 C -0.139 4.139 8 C -0.159 4.159 9 C -0.149 4.149 10 C -0.120 4.120 11 H 0.145 0.855 12 C 0.305 3.695 13 O -0.456 6.456 14 N -0.359 5.359 15 C -0.008 4.008 16 C 0.221 3.779 17 O -0.510 6.510 18 N -0.197 5.197 19 C -0.464 4.464 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.558 5.558 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.114 4.114 28 H 0.148 0.852 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.252 0.748 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.436 0.886 13.667 22.172 hybrid contribution 0.645 -0.074 -0.849 1.069 sum -16.791 0.812 12.818 21.140 Atomic orbital electron populations 1.23543 0.75014 1.05646 1.02467 1.86521 1.24906 1.33097 1.83634 1.24175 0.92567 0.81045 0.70719 1.90620 1.67964 1.37188 1.47039 1.21446 0.85773 1.00236 1.03785 0.86625 1.21508 0.96070 1.01079 0.95256 1.21581 0.94680 0.96958 1.02701 1.21649 1.01484 0.95376 0.96435 1.21433 0.95874 1.02298 0.92414 0.85531 1.21199 0.81125 0.79188 0.87954 1.90602 1.57549 1.48822 1.48637 1.45761 1.07576 1.57866 1.24666 1.20753 0.90095 0.99729 0.90175 1.20451 0.89728 0.83753 0.83965 1.90472 1.72205 1.49848 1.38484 1.41874 1.06918 1.49506 1.21404 1.19768 0.82164 1.36152 1.08296 0.89509 1.26128 1.05241 0.95416 0.94463 1.69683 1.38476 1.36476 1.11136 0.84818 0.76458 0.78331 0.78430 1.19335 1.19678 1.19758 1.21168 0.92978 0.93713 1.03546 0.85166 0.91525 0.92439 0.90392 0.89821 0.93767 0.89058 0.90503 0.87696 0.74758 0.89158 0.88916 0.76792 0.91121 0.88734 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.37 -8.00 10.47 -51.42 -0.54 -8.54 16 3 C 0.47 11.61 7.26 71.23 0.52 12.13 16 4 O -0.54 -15.56 15.73 21.94 0.35 -15.22 16 5 C -0.09 -2.10 2.33 -11.54 -0.03 -2.13 16 6 H 0.12 3.21 5.51 -2.38 -0.01 3.19 16 7 C -0.10 -1.72 5.14 30.59 0.16 -1.56 16 8 C -0.12 -2.07 5.70 30.59 0.17 -1.89 16 9 C -0.11 -1.71 5.35 30.59 0.16 -1.54 16 10 C -0.10 -1.92 3.01 -11.54 -0.03 -1.95 16 11 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 12 C 0.52 14.28 5.64 87.66 0.49 14.78 16 13 O -0.58 -19.38 13.66 -3.04 -0.04 -19.42 16 14 N -0.70 -21.17 5.42 -466.78 -2.53 -23.70 16 15 C 0.12 4.21 6.15 85.63 0.53 4.73 16 16 C 0.43 19.41 7.85 87.66 0.69 20.10 16 17 O -0.62 -31.05 15.24 -3.07 -0.05 -31.09 16 18 N -0.56 -27.71 5.29 -306.97 -1.62 -29.34 16 19 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 20 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -48.45 13.05 21.66 0.28 -48.16 16 23 Si 1.00 41.33 29.55 68.60 2.03 43.36 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 C -0.08 -1.60 3.66 30.59 0.11 -1.49 16 28 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.07 0.93 8.13 -2.39 -0.02 0.92 16 30 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.08 1.29 8.11 -2.39 -0.02 1.27 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 0.98 7.22 -2.38 -0.02 0.96 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.21 7.57 -2.38 -0.02 1.19 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.41 12.15 6.86 -92.71 -0.64 11.51 16 38 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 39 H 0.09 3.09 8.14 -2.38 -0.02 3.08 16 40 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 41 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.09 1.67 8.10 -2.38 -0.02 1.65 16 43 H 0.06 1.46 8.06 -2.39 -0.02 1.44 16 Total: -1.00 -68.63 355.61 2.81 -65.83 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.32 Total: 41.02 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 5.25 Total: 25.26 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -3.87 Total: -101.20 kcal Atomic # 8 Polarization: -73.99 SS G_CDS: -0.28 Total: -74.27 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -68.63 2.81 -65.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344178319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.518 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds