Wall clock time and date at job start Fri Apr 10 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 116.99922 * 2 1 4 4 O 1.20830 * 120.00379 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99898 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47302 * 300.00514 * 5 3 2 7 7 C 1.52998 * 109.47241 * 60.00108 * 5 3 2 8 8 C 1.53003 * 109.47456 * 179.97438 * 7 5 3 9 9 C 1.52999 * 109.47062 * 300.00242 * 8 7 5 10 10 C 1.52998 * 109.47183 * 59.99591 * 9 8 7 11 11 H 1.08998 * 109.46893 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46671 * 60.00171 * 10 9 8 13 13 O 1.21287 * 119.99891 * 239.99808 * 12 10 9 14 14 N 1.34770 * 120.00389 * 59.99883 * 12 10 9 15 15 C 1.46507 * 120.00400 * 179.97438 * 14 12 10 16 16 C 1.50697 * 109.47005 * 179.97438 * 15 14 12 17 17 O 1.21291 * 120.00763 * 359.73081 * 16 15 14 18 18 N 1.34784 * 119.99774 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47025 * 89.99899 * 23 21 19 25 25 H 1.48496 * 109.47352 * 210.00610 * 23 21 19 26 26 H 1.48511 * 109.46991 * 330.00512 * 23 21 19 27 27 C 1.52999 * 109.47135 * 180.02562 * 5 3 2 28 28 H 1.08994 * 109.46985 * 59.99372 * 1 2 3 29 29 H 1.08995 * 109.47373 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46864 * 299.99581 * 1 2 3 31 31 H 1.09006 * 109.47098 * 59.99725 * 7 5 3 32 32 H 1.09007 * 109.47198 * 300.00415 * 7 5 3 33 33 H 1.09001 * 109.47095 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46553 * 60.00367 * 8 7 5 35 35 H 1.09006 * 109.46776 * 299.99795 * 9 8 7 36 36 H 1.08994 * 109.46996 * 179.97438 * 9 8 7 37 37 H 0.97004 * 120.00047 * 359.97438 * 14 12 10 38 38 H 1.09001 * 109.46566 * 60.00609 * 15 14 12 39 39 H 1.08993 * 109.47390 * 300.00399 * 15 14 12 40 40 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 41 41 H 0.96990 * 120.00373 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.47339 * 60.00155 * 27 5 3 43 43 H 1.08997 * 109.47538 * 299.99740 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9565 0.7804 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 5.6408 0.6621 -1.2511 9 6 6.0741 2.1295 -1.2513 10 6 5.5275 2.8228 -0.0017 11 1 5.8366 3.8680 -0.0016 12 6 6.0674 2.1397 1.2283 13 8 5.3051 1.6378 2.0271 14 7 7.3971 2.0865 1.4408 15 6 7.9220 1.4229 2.6369 16 6 9.4269 1.5016 2.6356 17 8 10.0046 2.0531 1.7227 18 7 10.1313 0.9540 3.6459 19 6 11.5005 1.0208 3.6418 20 1 12.0149 1.5118 2.8289 21 6 12.2267 0.4567 4.6836 22 7 11.6009 -0.1411 5.6725 23 14 14.0925 0.5470 4.6779 24 1 14.5303 1.7843 5.3727 25 1 14.6476 -0.6379 5.3799 26 1 14.5828 0.5666 3.2762 27 6 4.0001 2.7420 0.0002 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.7228 1.0758 -2.1399 32 1 3.8038 -0.4638 -1.2503 33 1 6.0301 0.1686 -2.1416 34 1 6.0312 0.1680 -0.3615 35 1 5.6836 2.6235 -2.1410 36 1 7.1625 2.1869 -1.2515 37 1 8.0069 2.4875 0.8018 38 1 7.6132 0.3775 2.6373 39 1 7.5327 1.9170 3.5270 40 1 9.6693 0.5127 4.3758 41 1 12.1077 -0.5346 6.3999 42 1 3.6108 3.2356 0.8907 43 1 3.6101 3.2367 -0.8893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344178320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:08 Heat of formation + Delta-G solvation = -181.497892 kcal Electronic energy + Delta-G solvation = -26190.682859 eV Core-core repulsion = 22235.092404 eV Total energy + Delta-G solvation = -3955.590454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10024 -40.04289 -38.41015 -37.18941 -36.43855 -34.54019 -33.77732 -31.86316 -31.37391 -31.03939 -28.07307 -27.58209 -24.75064 -24.13779 -23.14003 -21.58944 -20.60871 -19.77485 -19.25873 -18.10104 -17.70012 -17.07159 -16.71112 -16.49411 -15.70071 -15.46248 -15.34483 -15.10493 -14.53179 -14.35684 -14.19922 -14.05698 -13.65063 -13.44531 -13.27343 -12.88587 -12.68747 -12.38671 -12.26319 -12.22240 -12.06687 -11.92501 -11.65626 -11.30770 -11.14507 -11.09957 -10.97985 -10.81029 -10.48063 -10.38472 -10.34091 -10.23868 -9.66240 -9.49629 -8.81282 -8.66429 -8.12948 -6.54065 -3.96174 2.11427 2.58451 2.76613 3.09808 3.20097 3.24188 3.34873 3.71091 4.09020 4.35990 4.48020 4.54442 4.79317 4.84767 4.88220 4.90741 4.96312 4.99149 5.05639 5.14458 5.18567 5.28518 5.30644 5.41738 5.52006 5.69515 5.79033 5.85300 5.87594 5.92911 5.98298 5.99292 6.04449 6.09434 6.19184 6.27425 6.66287 7.43523 7.63543 7.76772 7.89246 8.39219 8.43576 9.01948 9.36447 9.84107 10.62802 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.002514 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.914268 B =11134.166531 C =11529.659641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.513 6.513 5 C -0.093 4.093 6 H 0.140 0.860 7 C -0.108 4.108 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.107 4.107 11 H 0.105 0.895 12 C 0.517 3.483 13 O -0.548 6.548 14 N -0.704 5.704 15 C 0.108 3.892 16 C 0.427 3.573 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.269 1.269 27 C -0.079 4.079 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.078 0.922 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 0.649 -12.379 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.401 6.401 5 C -0.112 4.112 6 H 0.157 0.843 7 C -0.146 4.146 8 C -0.159 4.159 9 C -0.153 4.153 10 C -0.128 4.128 11 H 0.123 0.877 12 C 0.303 3.697 13 O -0.427 6.427 14 N -0.358 5.358 15 C -0.020 4.020 16 C 0.213 3.787 17 O -0.484 6.484 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.117 4.117 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.197 0.835 -12.218 21.112 hybrid contribution 0.705 -0.020 0.411 0.817 sum -16.492 0.815 -11.808 20.299 Atomic orbital electron populations 1.23242 0.76759 1.03550 1.02403 1.86531 1.23107 1.33770 1.84088 1.23978 0.92186 0.81067 0.71441 1.90637 1.67361 1.36402 1.45679 1.21459 0.86273 0.99843 1.03615 0.84318 1.21526 0.96204 1.01007 0.95859 1.21574 0.94759 0.96545 1.03064 1.21605 1.01413 0.95799 0.96460 1.21372 0.96454 1.01372 0.93652 0.87710 1.20522 0.82059 0.79894 0.87247 1.90600 1.57097 1.47686 1.47342 1.45752 1.06961 1.57722 1.25336 1.20961 0.93706 0.98677 0.88666 1.19750 0.87967 0.85657 0.85323 1.90495 1.70907 1.49473 1.37571 1.41807 1.07307 1.48701 1.20533 1.19727 0.80851 1.34990 1.07894 0.87669 1.25333 1.01043 0.96201 0.95151 1.69610 1.36973 1.36417 1.10459 0.85812 0.81712 0.77809 0.78695 1.20253 1.20785 1.19303 1.21173 0.92744 0.94057 1.03740 0.92085 0.88205 0.91960 0.91601 0.90585 0.90830 0.91253 0.90507 0.90555 0.75078 0.89853 0.89876 0.77043 0.91559 0.90288 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.07 10.47 -39.24 -0.41 -4.48 16 3 C 0.47 5.93 7.26 36.01 0.26 6.19 16 4 O -0.51 -7.52 15.73 -18.75 -0.30 -7.82 16 5 C -0.09 -1.08 2.33 -91.77 -0.21 -1.30 16 6 H 0.14 1.90 5.51 -51.93 -0.29 1.61 16 7 C -0.11 -1.02 5.14 -26.73 -0.14 -1.15 16 8 C -0.12 -1.16 5.70 -26.73 -0.15 -1.31 16 9 C -0.12 -1.03 5.36 -26.73 -0.14 -1.18 16 10 C -0.11 -1.13 3.01 -91.80 -0.28 -1.41 16 11 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 12 C 0.52 7.32 5.64 -10.99 -0.06 7.26 16 13 O -0.55 -9.20 13.66 5.55 0.08 -9.13 16 14 N -0.70 -10.81 5.42 -61.47 -0.33 -11.14 16 15 C 0.11 1.89 6.15 -5.19 -0.03 1.86 16 16 C 0.43 9.49 7.85 -10.98 -0.09 9.41 16 17 O -0.60 -14.82 15.24 5.55 0.08 -14.73 16 18 N -0.55 -13.34 5.29 -10.96 -0.06 -13.39 16 19 C -0.31 -8.16 9.68 -14.93 -0.14 -8.31 16 20 H 0.11 2.93 7.16 -52.48 -0.38 2.55 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.63 13.05 55.50 0.72 -22.91 16 23 Si 0.93 20.29 29.55 -169.99 -5.02 15.26 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 C -0.08 -0.88 3.66 -26.76 -0.10 -0.98 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.69 8.11 -51.93 -0.42 0.26 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.79 7.22 -51.93 -0.37 0.42 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.70 7.56 -51.93 -0.39 0.30 16 37 H 0.41 6.21 6.85 -40.82 -0.28 5.93 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.08 1.00 8.06 -51.93 -0.42 0.59 16 43 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -31.71 355.60 -6.22 -37.93 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.23 Total: 14.07 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.11 Total: 10.99 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.33 Total: -47.45 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.55 Total: -36.16 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.71 -6.22 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344178320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.568 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds