Wall clock time and date at job start Fri Apr 10 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 116.99922 * 2 1 4 4 O 1.20830 * 120.00379 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99898 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47302 * 300.00514 * 5 3 2 7 7 C 1.52998 * 109.47241 * 60.00108 * 5 3 2 8 8 C 1.53003 * 109.47456 * 179.97438 * 7 5 3 9 9 C 1.52999 * 109.47062 * 300.00242 * 8 7 5 10 10 C 1.52998 * 109.47183 * 59.99591 * 9 8 7 11 11 H 1.08998 * 109.46893 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46671 * 60.00171 * 10 9 8 13 13 O 1.21287 * 119.99891 * 239.99808 * 12 10 9 14 14 N 1.34770 * 120.00389 * 59.99883 * 12 10 9 15 15 C 1.46507 * 120.00400 * 179.97438 * 14 12 10 16 16 C 1.50697 * 109.47005 * 179.97438 * 15 14 12 17 17 O 1.21291 * 120.00763 * 359.73081 * 16 15 14 18 18 N 1.34784 * 119.99774 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47025 * 89.99899 * 23 21 19 25 25 H 1.48496 * 109.47352 * 210.00610 * 23 21 19 26 26 H 1.48511 * 109.46991 * 330.00512 * 23 21 19 27 27 C 1.52999 * 109.47135 * 180.02562 * 5 3 2 28 28 H 1.08994 * 109.46985 * 59.99372 * 1 2 3 29 29 H 1.08995 * 109.47373 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46864 * 299.99581 * 1 2 3 31 31 H 1.09006 * 109.47098 * 59.99725 * 7 5 3 32 32 H 1.09007 * 109.47198 * 300.00415 * 7 5 3 33 33 H 1.09001 * 109.47095 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46553 * 60.00367 * 8 7 5 35 35 H 1.09006 * 109.46776 * 299.99795 * 9 8 7 36 36 H 1.08994 * 109.46996 * 179.97438 * 9 8 7 37 37 H 0.97004 * 120.00047 * 359.97438 * 14 12 10 38 38 H 1.09001 * 109.46566 * 60.00609 * 15 14 12 39 39 H 1.08993 * 109.47390 * 300.00399 * 15 14 12 40 40 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 41 41 H 0.96990 * 120.00373 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.47339 * 60.00155 * 27 5 3 43 43 H 1.08997 * 109.47538 * 299.99740 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9565 0.7804 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 5.6408 0.6621 -1.2511 9 6 6.0741 2.1295 -1.2513 10 6 5.5275 2.8228 -0.0017 11 1 5.8366 3.8680 -0.0016 12 6 6.0674 2.1397 1.2283 13 8 5.3051 1.6378 2.0271 14 7 7.3971 2.0865 1.4408 15 6 7.9220 1.4229 2.6369 16 6 9.4269 1.5016 2.6356 17 8 10.0046 2.0531 1.7227 18 7 10.1313 0.9540 3.6459 19 6 11.5005 1.0208 3.6418 20 1 12.0149 1.5118 2.8289 21 6 12.2267 0.4567 4.6836 22 7 11.6009 -0.1411 5.6725 23 14 14.0925 0.5470 4.6779 24 1 14.5303 1.7843 5.3727 25 1 14.6476 -0.6379 5.3799 26 1 14.5828 0.5666 3.2762 27 6 4.0001 2.7420 0.0002 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.7228 1.0758 -2.1399 32 1 3.8038 -0.4638 -1.2503 33 1 6.0301 0.1686 -2.1416 34 1 6.0312 0.1680 -0.3615 35 1 5.6836 2.6235 -2.1410 36 1 7.1625 2.1869 -1.2515 37 1 8.0069 2.4875 0.8018 38 1 7.6132 0.3775 2.6373 39 1 7.5327 1.9170 3.5270 40 1 9.6693 0.5127 4.3758 41 1 12.1077 -0.5346 6.3999 42 1 3.6108 3.2356 0.8907 43 1 3.6101 3.2367 -0.8893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344178320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:08 Heat of formation + Delta-G solvation = -203.265376 kcal Electronic energy + Delta-G solvation = -26191.626768 eV Core-core repulsion = 22235.092404 eV Total energy + Delta-G solvation = -3956.534363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07684 -41.14039 -40.11627 -38.22509 -37.39524 -36.24085 -35.33655 -33.38450 -32.72349 -31.86824 -29.32723 -28.55734 -26.53309 -24.97632 -24.16841 -22.49367 -21.58270 -21.34058 -20.56305 -19.98717 -18.66564 -18.10817 -17.85968 -17.40223 -17.16371 -16.91366 -16.65506 -16.31185 -16.01624 -15.65505 -15.53285 -15.15884 -14.78899 -14.66051 -14.17796 -13.93458 -13.75948 -13.60077 -13.54130 -13.45308 -13.10634 -13.02739 -12.92153 -12.88455 -12.44988 -12.16832 -12.12420 -11.90085 -11.82558 -11.70774 -11.56098 -11.18584 -11.11012 -10.63008 -10.53600 -10.14154 -10.05327 -8.50605 -6.00636 1.14310 1.36864 1.43321 1.55770 1.63374 1.76677 1.92456 2.07186 2.33324 3.14529 3.16835 3.52385 3.61959 3.68395 3.91968 4.09016 4.15201 4.22140 4.25290 4.29639 4.30991 4.37878 4.44868 4.46138 4.48846 4.63824 4.68428 4.73280 4.96128 5.01316 5.10485 5.15391 5.23266 5.26959 5.33568 5.38085 5.39029 5.46535 5.92680 6.47203 6.58030 6.69951 7.04262 7.22331 7.45721 7.95303 8.66367 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.002514 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.914268 B =11134.166531 C =11529.659641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.470 3.530 4 O -0.538 6.538 5 C -0.094 4.094 6 H 0.116 0.884 7 C -0.102 4.102 8 C -0.122 4.122 9 C -0.112 4.112 10 C -0.099 4.099 11 H 0.127 0.873 12 C 0.517 3.483 13 O -0.576 6.576 14 N -0.705 5.705 15 C 0.120 3.880 16 C 0.434 3.566 17 O -0.622 6.622 18 N -0.561 5.561 19 C -0.335 4.335 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.996 3.004 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.269 1.269 27 C -0.076 4.076 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.414 0.586 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.279 0.721 42 H 0.057 0.943 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 0.717 -13.812 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.112 4.112 6 H 0.134 0.866 7 C -0.139 4.139 8 C -0.159 4.159 9 C -0.149 4.149 10 C -0.120 4.120 11 H 0.145 0.855 12 C 0.305 3.695 13 O -0.456 6.456 14 N -0.359 5.359 15 C -0.007 4.007 16 C 0.221 3.779 17 O -0.510 6.510 18 N -0.197 5.197 19 C -0.465 4.465 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.558 5.558 23 Si 0.820 3.180 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.193 1.193 27 C -0.114 4.114 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.252 0.748 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.427 0.892 -13.657 22.159 hybrid contribution 0.646 -0.064 0.846 1.066 sum -16.781 0.827 -12.812 21.129 Atomic orbital electron populations 1.23543 0.75010 1.05646 1.02467 1.86520 1.24908 1.33100 1.83631 1.24172 0.92564 0.81045 0.70721 1.90619 1.67966 1.37186 1.47039 1.21444 0.85773 1.00234 1.03783 0.86630 1.21510 0.96067 1.01080 0.95256 1.21583 0.94682 0.96962 1.02695 1.21651 1.01478 0.95379 0.96436 1.21429 0.95874 1.02299 0.92417 0.85530 1.21203 0.81125 0.79191 0.87959 1.90602 1.57551 1.48824 1.48640 1.45763 1.07575 1.57879 1.24652 1.20752 0.90097 0.99721 0.90178 1.20449 0.89729 0.83741 0.83997 1.90471 1.72185 1.50068 1.38289 1.41869 1.06884 1.49610 1.21315 1.19734 0.82150 1.36370 1.08218 0.89496 1.26130 1.05256 0.95397 0.94450 1.69678 1.38548 1.36699 1.10846 0.84875 0.76391 0.78172 0.78608 1.19624 1.19745 1.19335 1.21156 0.92983 0.93717 1.03548 0.91532 0.85165 0.92432 0.89818 0.90391 0.89056 0.93767 0.87686 0.90507 0.74757 0.88931 0.89149 0.76793 0.91114 0.92382 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.37 -8.00 10.47 -51.35 -0.54 -8.54 16 3 C 0.47 11.62 7.26 71.24 0.52 12.14 16 4 O -0.54 -15.57 15.73 21.95 0.35 -15.22 16 5 C -0.09 -2.10 2.33 -11.54 -0.03 -2.13 16 6 H 0.12 3.21 5.51 -2.38 -0.01 3.19 16 7 C -0.10 -1.72 5.14 30.59 0.16 -1.56 16 8 C -0.12 -2.07 5.70 30.60 0.17 -1.89 16 9 C -0.11 -1.71 5.36 30.59 0.16 -1.54 16 10 C -0.10 -1.92 3.01 -11.56 -0.03 -1.95 16 11 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 12 C 0.52 14.29 5.64 87.66 0.49 14.78 16 13 O -0.58 -19.39 13.66 -3.05 -0.04 -19.43 16 14 N -0.70 -21.18 5.42 -466.79 -2.53 -23.71 16 15 C 0.12 4.21 6.15 85.63 0.53 4.74 16 16 C 0.43 19.41 7.85 87.65 0.69 20.09 16 17 O -0.62 -31.03 15.24 -3.06 -0.05 -31.08 16 18 N -0.56 -27.71 5.29 -306.97 -1.62 -29.33 16 19 C -0.34 -18.21 9.68 84.04 0.81 -17.40 16 20 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -48.48 13.05 21.66 0.28 -48.19 16 23 Si 1.00 41.32 29.55 68.60 2.03 43.34 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 C -0.08 -1.60 3.66 30.58 0.11 -1.49 16 28 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 29 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.29 8.11 -2.38 -0.02 1.27 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.04 0.98 7.22 -2.39 -0.02 0.96 16 35 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.21 7.56 -2.39 -0.02 1.19 16 37 H 0.41 12.15 6.85 -92.71 -0.64 11.51 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.40 18.98 7.90 -92.70 -0.73 18.25 16 41 H 0.28 13.82 8.31 -92.72 -0.77 13.05 16 42 H 0.06 1.46 8.06 -2.39 -0.02 1.44 16 43 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -68.59 355.60 2.81 -65.78 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -0.32 Total: 41.16 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 5.25 Total: 25.22 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -3.87 Total: -101.23 kcal Atomic # 8 Polarization: -73.99 SS G_CDS: -0.28 Total: -74.27 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -68.59 2.81 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344178320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.484 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds