Wall clock time and date at job start Fri Apr 10 2020 18:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00012 * 2 1 4 4 O 1.20831 * 119.99988 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00299 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47120 * 300.00005 * 5 3 2 7 7 C 1.53002 * 109.46783 * 59.99730 * 5 3 2 8 8 C 1.52997 * 109.47092 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.47445 * 300.00075 * 8 7 5 10 10 C 1.53002 * 109.46711 * 59.99695 * 9 8 7 11 11 H 1.09002 * 109.47070 * 60.00376 * 10 9 8 12 12 C 1.50703 * 109.46966 * 180.02562 * 10 9 8 13 13 O 1.21278 * 119.99985 * 119.99692 * 12 10 9 14 14 N 1.34777 * 120.00161 * 300.00385 * 12 10 9 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 10 16 16 C 1.50701 * 109.47174 * 179.97438 * 15 14 12 17 17 O 1.21289 * 119.99822 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00115 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00498 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99263 * 359.97438 * 19 18 16 21 21 C 1.38941 * 120.00398 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47048 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47346 * 120.00033 * 23 21 19 26 26 H 1.48500 * 109.47515 * 240.00430 * 23 21 19 27 27 C 1.53000 * 109.47233 * 300.00001 * 10 9 8 28 28 H 1.08992 * 109.47270 * 300.00621 * 1 2 3 29 29 H 1.09008 * 109.46856 * 60.00768 * 1 2 3 30 30 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47067 * 60.00244 * 7 5 3 32 32 H 1.09000 * 109.47312 * 300.00217 * 7 5 3 33 33 H 1.09001 * 109.47375 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47497 * 59.99850 * 8 7 5 35 35 H 1.09002 * 109.46589 * 300.00331 * 9 8 7 36 36 H 1.08996 * 109.47165 * 179.97438 * 9 8 7 37 37 H 0.97005 * 119.99463 * 359.97438 * 14 12 10 38 38 H 1.09002 * 109.47021 * 299.99722 * 15 14 12 39 39 H 1.09001 * 109.47001 * 59.99554 * 15 14 12 40 40 H 0.97003 * 119.99640 * 359.97438 * 18 16 15 41 41 H 0.97002 * 120.00214 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.47194 * 179.97438 * 27 10 9 43 43 H 1.08992 * 109.47399 * 300.00166 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1138 0.5811 -1.2483 8 6 5.6417 0.6606 -1.2475 9 6 6.0761 2.1277 -1.2473 10 6 5.5286 2.8215 0.0016 11 1 5.9176 2.3273 0.8918 12 6 5.9559 4.2667 0.0014 13 8 5.1206 5.1460 0.0008 14 7 7.2662 4.5820 0.0018 15 6 7.6816 5.9868 0.0022 16 6 9.1866 6.0657 0.0033 17 8 9.8471 5.0484 0.0041 18 7 9.7985 7.2665 0.0033 19 6 11.1676 7.3383 0.0048 20 1 11.7557 6.4325 0.0063 21 6 11.7984 8.5763 0.0042 22 7 11.0827 9.6784 0.0029 23 14 13.6638 8.6741 0.0070 24 1 14.2314 7.3018 0.0088 25 1 14.1233 9.3976 -1.2056 26 1 14.1197 9.4004 1.2193 27 6 4.0006 2.7420 0.0006 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.7244 1.0750 -2.1386 32 1 3.8048 -0.4642 -1.2482 33 1 6.0318 0.1667 -2.1374 34 1 6.0309 0.1665 -0.3572 35 1 5.6870 2.6218 -2.1376 36 1 7.1646 2.1843 -1.2463 37 1 7.9343 3.8786 0.0026 38 1 7.2922 6.4811 -0.8878 39 1 7.2916 6.4807 0.8922 40 1 9.2702 8.0800 0.0023 41 1 11.5231 10.5427 0.0021 42 1 3.6105 3.2359 0.8906 43 1 3.6116 3.2362 -0.8895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344178322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:15 Heat of formation + Delta-G solvation = -186.028389 kcal Electronic energy + Delta-G solvation = -25570.943470 eV Core-core repulsion = 21615.156558 eV Total energy + Delta-G solvation = -3955.786911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.05883 -39.94187 -38.40781 -37.56544 -36.62542 -34.48112 -33.70723 -31.97024 -31.37543 -31.15365 -28.17466 -27.58073 -24.75757 -24.24707 -23.23044 -21.43048 -20.31366 -19.84292 -19.53493 -18.21518 -17.84629 -17.36009 -16.72414 -16.43106 -15.69260 -15.49272 -15.34553 -15.04823 -14.51265 -14.47166 -14.34895 -14.09562 -13.74371 -13.51110 -13.37888 -13.00670 -12.75190 -12.67490 -12.32520 -12.19859 -11.94734 -11.65154 -11.63864 -11.45184 -11.15352 -11.12349 -11.00719 -10.97012 -10.69109 -10.42048 -10.37244 -10.33651 -9.66163 -9.57634 -8.78935 -8.64680 -8.11572 -6.52762 -3.94891 1.93792 2.37969 2.81712 3.09313 3.21242 3.26964 3.37907 3.72658 4.09852 4.22558 4.36463 4.40634 4.70287 4.77017 4.81348 4.85071 4.86272 4.89511 4.99712 5.04678 5.13337 5.15851 5.18583 5.30401 5.35244 5.66428 5.70221 5.72451 5.88181 5.89348 5.94547 5.96056 6.04562 6.06363 6.09757 6.21110 6.68393 7.44896 7.47592 7.80942 7.90919 8.42329 8.46879 9.03287 9.38039 9.85655 10.64143 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.040404 B = 0.002175 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.829781 B =12873.103892 C =13414.469880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.500 6.500 5 C -0.078 4.078 6 H 0.111 0.889 7 C -0.112 4.112 8 C -0.115 4.115 9 C -0.117 4.117 10 C -0.103 4.103 11 H 0.101 0.899 12 C 0.514 3.486 13 O -0.546 6.546 14 N -0.706 5.706 15 C 0.108 3.892 16 C 0.428 3.572 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.083 4.083 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.080 0.920 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 -19.193 -1.099 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.386 6.386 5 C -0.098 4.098 6 H 0.129 0.871 7 C -0.150 4.150 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.124 4.124 11 H 0.119 0.881 12 C 0.300 3.700 13 O -0.423 6.423 14 N -0.360 5.360 15 C -0.020 4.020 16 C 0.214 3.786 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.121 4.121 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.405 -18.700 -1.100 24.900 hybrid contribution 0.663 0.524 0.082 0.849 sum -15.742 -18.175 -1.018 24.066 Atomic orbital electron populations 1.23266 0.76455 1.03614 1.02625 1.86506 1.23338 1.33641 1.84215 1.23850 0.92081 0.81266 0.72242 1.90707 1.67114 1.36306 1.44512 1.21138 0.86684 0.99668 1.02264 0.87108 1.21573 0.96491 1.00879 0.96032 1.21523 0.94374 0.96295 1.03015 1.21623 1.01498 0.95460 0.96939 1.21282 0.96833 0.93277 1.01048 0.88137 1.20451 0.82234 0.91001 0.76312 1.90706 1.51560 1.50101 1.49975 1.45727 1.07319 1.08862 1.74122 1.20955 0.94634 0.83174 1.03225 1.19751 0.88398 0.84896 0.85569 1.90489 1.65950 1.34601 1.57423 1.41812 1.07719 1.06296 1.62574 1.19778 0.81187 0.94289 1.48164 0.87606 1.25335 1.00944 0.94702 0.96806 1.69623 1.36489 0.97973 1.49345 0.85751 0.81814 0.78651 0.77829 1.19130 1.20618 1.20613 1.21226 0.93130 0.92470 1.05315 0.91899 0.91895 0.88125 0.91175 0.90400 0.90749 0.91102 0.91005 0.90439 0.75129 0.89882 0.89891 0.77032 0.91624 0.90124 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.22 10.47 -39.26 -0.41 -3.63 16 3 C 0.46 4.88 7.26 36.00 0.26 5.14 16 4 O -0.50 -6.95 15.73 -18.75 -0.30 -7.25 16 5 C -0.08 -0.67 2.63 -91.77 -0.24 -0.91 16 6 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 7 C -0.11 -0.79 5.14 -26.73 -0.14 -0.92 16 8 C -0.11 -0.77 5.92 -26.73 -0.16 -0.92 16 9 C -0.12 -1.06 5.10 -26.73 -0.14 -1.20 16 10 C -0.10 -1.11 2.53 -91.77 -0.23 -1.34 16 11 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 12 C 0.51 7.82 7.15 -10.98 -0.08 7.74 16 13 O -0.55 -10.25 15.98 5.56 0.09 -10.16 16 14 N -0.71 -11.35 5.42 -61.47 -0.33 -11.69 16 15 C 0.11 1.97 6.15 -5.20 -0.03 1.94 16 16 C 0.43 9.71 7.85 -10.98 -0.09 9.62 16 17 O -0.60 -15.03 15.24 5.55 0.08 -14.94 16 18 N -0.55 -13.56 5.29 -10.97 -0.06 -13.62 16 19 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 20 H 0.11 2.98 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.84 13.05 55.50 0.72 -23.12 16 23 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 C -0.08 -0.93 3.06 -26.73 -0.08 -1.02 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.13 -51.92 -0.42 0.00 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 37 H 0.41 6.37 6.86 -40.82 -0.28 6.09 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.40 9.43 7.90 -40.82 -0.32 9.11 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 43 H 0.08 1.06 8.06 -51.93 -0.42 0.65 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -33.22 362.14 -6.28 -39.50 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.41 Total: 12.44 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -0.10 Total: 11.60 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.33 Total: -48.42 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.53 Total: -35.98 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.22 -6.28 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344178322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.531 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds