Wall clock time and date at job start Fri Apr 10 2020 18:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00012 * 2 1 4 4 O 1.20831 * 119.99988 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00299 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47120 * 300.00005 * 5 3 2 7 7 C 1.53002 * 109.46783 * 59.99730 * 5 3 2 8 8 C 1.52997 * 109.47092 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.47445 * 300.00075 * 8 7 5 10 10 C 1.53002 * 109.46711 * 59.99695 * 9 8 7 11 11 H 1.09002 * 109.47070 * 60.00376 * 10 9 8 12 12 C 1.50703 * 109.46966 * 180.02562 * 10 9 8 13 13 O 1.21278 * 119.99985 * 119.99692 * 12 10 9 14 14 N 1.34777 * 120.00161 * 300.00385 * 12 10 9 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 10 16 16 C 1.50701 * 109.47174 * 179.97438 * 15 14 12 17 17 O 1.21289 * 119.99822 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00115 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00498 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99263 * 359.97438 * 19 18 16 21 21 C 1.38941 * 120.00398 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47048 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47346 * 120.00033 * 23 21 19 26 26 H 1.48500 * 109.47515 * 240.00430 * 23 21 19 27 27 C 1.53000 * 109.47233 * 300.00001 * 10 9 8 28 28 H 1.08992 * 109.47270 * 300.00621 * 1 2 3 29 29 H 1.09008 * 109.46856 * 60.00768 * 1 2 3 30 30 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47067 * 60.00244 * 7 5 3 32 32 H 1.09000 * 109.47312 * 300.00217 * 7 5 3 33 33 H 1.09001 * 109.47375 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47497 * 59.99850 * 8 7 5 35 35 H 1.09002 * 109.46589 * 300.00331 * 9 8 7 36 36 H 1.08996 * 109.47165 * 179.97438 * 9 8 7 37 37 H 0.97005 * 119.99463 * 359.97438 * 14 12 10 38 38 H 1.09002 * 109.47021 * 299.99722 * 15 14 12 39 39 H 1.09001 * 109.47001 * 59.99554 * 15 14 12 40 40 H 0.97003 * 119.99640 * 359.97438 * 18 16 15 41 41 H 0.97002 * 120.00214 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.47194 * 179.97438 * 27 10 9 43 43 H 1.08992 * 109.47399 * 300.00166 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1138 0.5811 -1.2483 8 6 5.6417 0.6606 -1.2475 9 6 6.0761 2.1277 -1.2473 10 6 5.5286 2.8215 0.0016 11 1 5.9176 2.3273 0.8918 12 6 5.9559 4.2667 0.0014 13 8 5.1206 5.1460 0.0008 14 7 7.2662 4.5820 0.0018 15 6 7.6816 5.9868 0.0022 16 6 9.1866 6.0657 0.0033 17 8 9.8471 5.0484 0.0041 18 7 9.7985 7.2665 0.0033 19 6 11.1676 7.3383 0.0048 20 1 11.7557 6.4325 0.0063 21 6 11.7984 8.5763 0.0042 22 7 11.0827 9.6784 0.0029 23 14 13.6638 8.6741 0.0070 24 1 14.2314 7.3018 0.0088 25 1 14.1233 9.3976 -1.2056 26 1 14.1197 9.4004 1.2193 27 6 4.0006 2.7420 0.0006 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.7244 1.0750 -2.1386 32 1 3.8048 -0.4642 -1.2482 33 1 6.0318 0.1667 -2.1374 34 1 6.0309 0.1665 -0.3572 35 1 5.6870 2.6218 -2.1376 36 1 7.1646 2.1843 -1.2463 37 1 7.9343 3.8786 0.0026 38 1 7.2922 6.4811 -0.8878 39 1 7.2916 6.4807 0.8922 40 1 9.2702 8.0800 0.0023 41 1 11.5231 10.5427 0.0021 42 1 3.6105 3.2359 0.8906 43 1 3.6116 3.2362 -0.8895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344178322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:13 Heat of formation + Delta-G solvation = -209.368251 kcal Electronic energy + Delta-G solvation = -25571.955562 eV Core-core repulsion = 21615.156558 eV Total energy + Delta-G solvation = -3956.799004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.90188 -41.13578 -40.07592 -38.56570 -37.44954 -36.26032 -35.32457 -33.39716 -32.77085 -31.90453 -29.34646 -28.55911 -26.54665 -25.00114 -24.24895 -22.17477 -21.38302 -21.30960 -20.69267 -20.06744 -18.96372 -18.32121 -17.62549 -17.41901 -17.08799 -16.95535 -16.74600 -16.30997 -15.99722 -15.71240 -15.44674 -15.12433 -14.90604 -14.71933 -14.24931 -14.06013 -13.84299 -13.64278 -13.55679 -13.47705 -13.32638 -12.93586 -12.90704 -12.44751 -12.41025 -12.23015 -12.10720 -11.85008 -11.79483 -11.66252 -11.58111 -11.43706 -11.13026 -10.78400 -10.55488 -10.19771 -10.08390 -8.51418 -6.01745 1.13765 1.35083 1.43093 1.57152 1.59081 1.67580 1.90503 2.07910 2.32788 3.12236 3.15782 3.43395 3.64077 3.66499 3.83755 4.07290 4.15154 4.22155 4.28030 4.31035 4.32138 4.39272 4.40503 4.41201 4.42813 4.52243 4.65842 4.72058 5.01137 5.04123 5.12959 5.17929 5.24619 5.26422 5.32385 5.38602 5.39658 5.48959 5.91538 6.45480 6.54746 6.70164 7.03034 7.18615 7.44071 7.93385 8.65717 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.040404 B = 0.002175 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.829781 B =12873.103892 C =13414.469880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.543 6.543 5 C -0.072 4.072 6 H 0.141 0.859 7 C -0.107 4.107 8 C -0.107 4.107 9 C -0.116 4.116 10 C -0.093 4.093 11 H 0.130 0.870 12 C 0.513 3.487 13 O -0.585 6.585 14 N -0.704 5.704 15 C 0.119 3.881 16 C 0.434 3.566 17 O -0.621 6.621 18 N -0.561 5.561 19 C -0.336 4.336 20 H 0.088 0.912 21 C -0.013 4.013 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.078 4.078 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.135 0.865 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.416 0.584 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.279 0.721 42 H 0.059 0.941 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 -21.433 -0.966 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.433 6.433 5 C -0.091 4.091 6 H 0.158 0.842 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.154 4.154 10 C -0.114 4.114 11 H 0.148 0.852 12 C 0.301 3.699 13 O -0.465 6.465 14 N -0.358 5.358 15 C -0.009 4.009 16 C 0.221 3.779 17 O -0.509 6.509 18 N -0.196 5.196 19 C -0.465 4.465 20 H 0.106 0.894 21 C -0.213 4.213 22 N -0.558 5.558 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.116 4.116 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.255 0.745 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.938 -20.973 -0.971 26.360 hybrid contribution 0.406 1.189 0.037 1.257 sum -15.532 -19.784 -0.933 25.170 Atomic orbital electron populations 1.23540 0.75148 1.05732 1.02253 1.86497 1.24646 1.32530 1.83613 1.24252 0.92831 0.81077 0.70962 1.90696 1.68158 1.37762 1.46702 1.21164 0.85521 0.97923 1.04499 0.84183 1.21581 0.96758 1.01606 0.94549 1.21514 0.93828 0.94299 1.04755 1.21646 1.01419 0.97086 0.95243 1.21318 0.96445 0.90232 1.03355 0.85197 1.21281 0.81208 0.92689 0.74707 1.90692 1.52388 1.51783 1.51655 1.45736 1.07934 1.07848 1.74325 1.20762 0.91204 0.85008 1.03934 1.20386 0.90039 0.83927 0.83510 1.90465 1.67220 1.35278 1.57935 1.41874 1.07284 1.07006 1.63474 1.19789 0.82283 0.94207 1.50204 0.89387 1.26158 1.05324 0.94014 0.95835 1.69692 1.38197 0.98434 1.49435 0.84789 0.76310 0.78507 0.78239 1.19252 1.19721 1.19716 1.21095 0.93303 0.94267 1.02984 0.92313 0.92351 0.84741 0.92257 0.88361 0.89325 0.89059 0.92334 0.90266 0.74548 0.89189 0.89121 0.76809 0.91110 0.92267 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.74 10.47 -51.41 -0.54 -6.28 16 3 C 0.46 9.41 7.26 71.23 0.52 9.93 16 4 O -0.54 -15.49 15.73 21.95 0.35 -15.15 16 5 C -0.07 -1.10 2.63 -11.54 -0.03 -1.13 16 6 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 7 C -0.11 -1.22 5.14 30.59 0.16 -1.06 16 8 C -0.11 -1.06 5.92 30.60 0.18 -0.88 16 9 C -0.12 -1.88 5.10 30.60 0.16 -1.73 16 10 C -0.09 -1.86 2.53 -11.54 -0.03 -1.89 16 11 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 12 C 0.51 15.45 7.15 87.66 0.63 16.07 16 13 O -0.59 -22.40 15.98 -3.02 -0.05 -22.44 16 14 N -0.70 -22.24 5.42 -466.79 -2.53 -24.77 16 15 C 0.12 4.35 6.15 85.63 0.53 4.87 16 16 C 0.43 19.82 7.85 87.66 0.69 20.51 16 17 O -0.62 -31.30 15.24 -3.06 -0.05 -31.35 16 18 N -0.56 -28.11 5.29 -306.99 -1.62 -29.73 16 19 C -0.34 -18.38 9.68 84.04 0.81 -17.56 16 20 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 21 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 22 N -0.92 -48.86 13.05 21.66 0.28 -48.57 16 23 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 C -0.08 -1.73 3.06 30.59 0.09 -1.64 16 28 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 30 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.79 8.11 -2.39 -0.02 0.77 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.29 7.56 -2.39 -0.02 1.27 16 37 H 0.42 12.47 6.86 -92.70 -0.64 11.84 16 38 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 41 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 42 H 0.06 1.55 8.06 -2.39 -0.02 1.53 16 43 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 Total: -1.00 -73.19 362.14 2.91 -70.29 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.33 Total: 37.62 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 5.37 Total: 26.81 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.87 Total: -103.08 kcal Atomic # 8 Polarization: -74.93 SS G_CDS: -0.29 Total: -75.22 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -73.19 2.91 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344178322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.081 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds