Wall clock time and date at job start Fri Apr 10 2020 18:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 N 1.46497 * 109.47058 * 120.00057 * 2 1 3 5 5 C 1.46762 * 124.34850 * 120.19340 * 4 2 1 6 6 C 1.54479 * 105.53509 * 163.21275 * 5 4 2 7 7 H 1.09005 * 111.00347 * 267.07376 * 6 5 4 8 8 N 1.46500 * 110.96852 * 143.32668 * 6 5 4 9 9 C 1.34780 * 119.99649 * 161.16646 * 8 6 5 10 10 O 1.21582 * 120.00215 * 0.02562 * 9 8 6 11 11 N 1.34781 * 119.99962 * 180.02562 * 9 8 6 12 12 C 1.46490 * 120.00069 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.47243 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99626 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00429 * 180.02562 * 13 12 11 16 16 C 1.37103 * 120.00252 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99811 * 359.97438 * 16 15 13 18 18 C 1.38953 * 120.00019 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99975 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99874 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47538 * 59.99416 * 20 18 16 22 22 H 1.48500 * 109.47078 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47213 * 299.99574 * 20 18 16 24 24 C 1.54623 * 101.76448 * 25.20998 * 6 5 4 25 25 C 1.34417 * 124.35094 * 300.02103 * 4 2 1 26 26 O 1.21283 * 124.94355 * 0.43141 * 25 4 2 27 27 H 1.09004 * 109.47122 * 300.00105 * 1 2 3 28 28 H 1.09001 * 109.46967 * 59.99598 * 1 2 3 29 29 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47122 * 239.99895 * 2 1 3 31 31 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47427 * 300.00120 * 3 2 1 33 33 H 1.08997 * 109.46935 * 60.00202 * 3 2 1 34 34 H 1.09004 * 110.38933 * 44.10688 * 5 4 2 35 35 H 1.08995 * 110.11843 * 282.18104 * 5 4 2 36 36 H 0.96998 * 120.00031 * 341.17155 * 8 6 5 37 37 H 0.97006 * 119.99769 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.47295 * 299.99952 * 12 11 9 39 39 H 1.09000 * 109.47560 * 60.00710 * 12 11 9 40 40 H 0.97002 * 120.00289 * 0.02562 * 15 13 12 41 41 H 0.96998 * 120.00019 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.48720 * 216.52574 * 24 6 5 43 43 H 1.09003 * 110.60041 * 93.93250 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8688 -1.8864 1.1727 6 6 3.4698 -1.9945 2.5916 7 1 4.4381 -1.4967 2.6448 8 7 3.5795 -3.3945 3.0092 9 6 4.4047 -3.7336 4.0195 10 8 5.0577 -2.8777 4.5845 11 7 4.5061 -5.0216 4.4034 12 6 5.4025 -5.3902 5.5018 13 6 5.3308 -6.8780 5.7311 14 8 4.6028 -7.5630 5.0441 15 7 6.0755 -7.4473 6.6994 16 6 6.0107 -8.8008 6.9076 17 1 5.3624 -9.4108 6.2960 18 6 6.7781 -9.3877 7.9063 19 7 7.5665 -8.6454 8.6509 20 14 6.6903 -11.2319 8.1895 21 1 7.1052 -11.9429 6.9536 22 1 7.5974 -11.6053 9.3043 23 1 5.2976 -11.6137 8.5363 24 6 2.4152 -1.2455 3.4386 25 6 1.7476 -0.3086 2.4561 26 8 1.0635 0.6453 2.7610 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.6628 -1.7733 0.4344 35 1 2.2692 -2.7686 0.9488 36 1 3.0583 -4.0773 2.5587 37 1 3.9853 -5.7046 3.9523 38 1 6.4245 -5.1105 5.2461 39 1 5.0991 -4.8682 6.4093 40 1 6.6575 -6.8994 7.2490 41 1 8.1025 -9.0551 9.3478 42 1 2.8976 -0.6809 4.2365 43 1 1.6888 -1.9448 3.8527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345390301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:23 Heat of formation + Delta-G solvation = -99.609474 kcal Electronic energy + Delta-G solvation = -25318.334211 eV Core-core repulsion = 21398.587456 eV Total energy + Delta-G solvation = -3919.746755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06832 -39.77273 -38.26279 -36.84203 -35.84533 -34.45341 -33.73455 -33.20471 -31.40001 -29.72168 -28.08320 -27.55574 -27.04175 -24.50906 -22.82117 -22.18613 -20.87306 -19.64644 -19.20875 -18.55223 -18.00724 -17.14610 -16.79122 -16.22152 -15.62011 -15.50287 -15.28570 -14.69319 -14.54285 -14.28650 -14.19323 -14.10694 -14.01544 -13.85381 -13.63959 -13.42393 -13.06464 -12.50098 -12.38082 -12.23197 -12.21151 -11.91458 -11.65419 -11.64849 -11.58951 -11.45084 -11.12276 -10.52585 -10.34367 -10.20980 -9.97966 -9.64785 -9.30792 -9.10081 -8.72924 -8.65845 -8.12389 -6.53368 -3.95625 2.33223 2.39113 2.76137 3.11965 3.20343 3.23950 3.24964 3.72231 3.95020 4.05855 4.12632 4.32879 4.49907 4.57262 4.66396 4.72719 4.80381 4.86346 5.01179 5.15161 5.17218 5.25971 5.28858 5.41529 5.49043 5.55722 5.64435 5.83058 5.87305 5.88644 5.96295 6.04579 6.26363 6.29453 6.66332 6.78235 6.93044 7.43805 7.89640 7.89803 8.10644 8.42535 8.66722 9.02344 9.37021 9.84684 10.63328 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.001993 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.452545 B =14042.581333 C =14268.716552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.617 5.617 5 C 0.098 3.902 6 C 0.160 3.840 7 H 0.112 0.888 8 N -0.740 5.740 9 C 0.707 3.293 10 O -0.592 6.592 11 N -0.722 5.722 12 C 0.128 3.872 13 C 0.427 3.573 14 O -0.599 6.599 15 N -0.548 5.548 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.171 4.171 25 C 0.524 3.476 26 O -0.527 6.527 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.400 0.600 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.275 0.725 42 H 0.109 0.891 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 14.844 -16.745 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.353 5.353 5 C -0.026 4.026 6 C 0.053 3.947 7 H 0.130 0.870 8 N -0.397 5.397 9 C 0.407 3.593 10 O -0.471 6.471 11 N -0.379 5.379 12 C 0.000 4.000 13 C 0.213 3.787 14 O -0.486 6.486 15 N -0.183 5.183 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.213 4.213 25 C 0.312 3.688 26 O -0.402 6.402 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.039 15.626 -16.383 24.378 hybrid contribution -0.060 -1.351 0.112 1.357 sum -9.098 14.275 -16.271 23.480 Atomic orbital electron populations 1.22188 0.94602 1.02438 1.03388 1.20960 0.94544 0.93159 0.86293 1.22193 1.01397 0.95712 1.03370 1.48444 1.51470 1.28974 1.06385 1.22293 0.94423 0.88336 0.97545 1.21471 0.99655 0.82077 0.91487 0.87039 1.44936 1.48232 1.08348 1.38186 1.15795 0.80205 0.83069 0.80259 1.90927 1.49156 1.49104 1.57877 1.44765 1.48027 1.06916 1.38175 1.20802 0.94363 0.94895 0.89946 1.19749 0.85615 0.88500 0.84834 1.90490 1.43910 1.63801 1.50387 1.41783 1.37838 1.08885 1.29761 1.19675 1.24611 0.82650 1.16621 0.87729 1.25332 0.95785 1.00793 0.95804 1.69605 1.26213 1.36634 1.20932 0.85864 0.78331 0.81699 0.78017 1.19785 1.20852 1.19787 1.22912 0.99695 0.99580 0.99078 1.20842 0.79868 0.84549 0.83537 1.90698 1.39242 1.28927 1.81380 0.90923 0.91431 0.92452 0.89365 0.92352 0.91441 0.90931 0.89320 0.90418 0.76564 0.75510 0.89914 0.89921 0.76991 0.91504 0.87248 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.20 37.16 0.34 -0.84 16 2 C 0.15 1.03 3.47 -67.93 -0.24 0.79 16 3 C -0.17 -1.20 9.20 37.16 0.34 -0.85 16 4 N -0.62 -4.87 2.83 -164.85 -0.47 -5.34 16 5 C 0.10 0.57 7.02 -3.12 -0.02 0.55 16 6 C 0.16 1.36 3.43 -66.30 -0.23 1.13 16 7 H 0.11 1.08 7.72 -51.93 -0.40 0.68 16 8 N -0.74 -7.06 5.19 -57.08 -0.30 -7.36 16 9 C 0.71 10.10 8.56 -86.91 -0.74 9.36 16 10 O -0.59 -10.50 16.09 5.29 0.09 -10.41 16 11 N -0.72 -11.04 5.53 -66.42 -0.37 -11.41 16 12 C 0.13 2.26 6.15 -5.20 -0.03 2.22 16 13 C 0.43 9.46 7.85 -10.99 -0.09 9.38 16 14 O -0.60 -14.79 15.24 5.54 0.08 -14.70 16 15 N -0.55 -13.27 5.29 -10.96 -0.06 -13.33 16 16 C -0.31 -8.17 9.68 -14.93 -0.14 -8.31 16 17 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.54 13.05 55.50 0.72 -22.81 16 20 Si 0.93 20.24 29.55 -169.99 -5.02 15.21 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 C -0.17 -1.66 6.59 -26.74 -0.18 -1.84 16 25 C 0.52 5.64 7.41 -10.86 -0.08 5.56 16 26 O -0.53 -7.46 15.12 5.55 0.08 -7.38 16 27 H 0.07 0.70 6.77 -51.93 -0.35 0.35 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.70 6.80 -51.93 -0.35 0.35 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.35 7.77 -51.93 -0.40 -0.06 16 36 H 0.40 2.79 8.38 -40.82 -0.34 2.45 16 37 H 0.41 6.01 7.45 -40.82 -0.30 5.70 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -33.17 362.81 -7.14 -40.31 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.21 Total: 14.03 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: -1.16 Total: 17.71 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.46 Total: -60.24 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: 0.25 Total: -32.49 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.17 -7.14 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345390301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.302 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds