Wall clock time and date at job start Fri Apr 10 2020 18:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 N 1.46497 * 109.47058 * 120.00057 * 2 1 3 5 5 C 1.46762 * 124.34850 * 120.19340 * 4 2 1 6 6 C 1.54479 * 105.53509 * 163.21275 * 5 4 2 7 7 H 1.09005 * 111.00347 * 267.07376 * 6 5 4 8 8 N 1.46500 * 110.96852 * 143.32668 * 6 5 4 9 9 C 1.34780 * 119.99649 * 161.16646 * 8 6 5 10 10 O 1.21582 * 120.00215 * 0.02562 * 9 8 6 11 11 N 1.34781 * 119.99962 * 180.02562 * 9 8 6 12 12 C 1.46490 * 120.00069 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.47243 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99626 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00429 * 180.02562 * 13 12 11 16 16 C 1.37103 * 120.00252 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99811 * 359.97438 * 16 15 13 18 18 C 1.38953 * 120.00019 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99975 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99874 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47538 * 59.99416 * 20 18 16 22 22 H 1.48500 * 109.47078 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47213 * 299.99574 * 20 18 16 24 24 C 1.54623 * 101.76448 * 25.20998 * 6 5 4 25 25 C 1.34417 * 124.35094 * 300.02103 * 4 2 1 26 26 O 1.21283 * 124.94355 * 0.43141 * 25 4 2 27 27 H 1.09004 * 109.47122 * 300.00105 * 1 2 3 28 28 H 1.09001 * 109.46967 * 59.99598 * 1 2 3 29 29 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47122 * 239.99895 * 2 1 3 31 31 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47427 * 300.00120 * 3 2 1 33 33 H 1.08997 * 109.46935 * 60.00202 * 3 2 1 34 34 H 1.09004 * 110.38933 * 44.10688 * 5 4 2 35 35 H 1.08995 * 110.11843 * 282.18104 * 5 4 2 36 36 H 0.96998 * 120.00031 * 341.17155 * 8 6 5 37 37 H 0.97006 * 119.99769 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.47295 * 299.99952 * 12 11 9 39 39 H 1.09000 * 109.47560 * 60.00710 * 12 11 9 40 40 H 0.97002 * 120.00289 * 0.02562 * 15 13 12 41 41 H 0.96998 * 120.00019 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.48720 * 216.52574 * 24 6 5 43 43 H 1.09003 * 110.60041 * 93.93250 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8688 -1.8864 1.1727 6 6 3.4698 -1.9945 2.5916 7 1 4.4381 -1.4967 2.6448 8 7 3.5795 -3.3945 3.0092 9 6 4.4047 -3.7336 4.0195 10 8 5.0577 -2.8777 4.5845 11 7 4.5061 -5.0216 4.4034 12 6 5.4025 -5.3902 5.5018 13 6 5.3308 -6.8780 5.7311 14 8 4.6028 -7.5630 5.0441 15 7 6.0755 -7.4473 6.6994 16 6 6.0107 -8.8008 6.9076 17 1 5.3624 -9.4108 6.2960 18 6 6.7781 -9.3877 7.9063 19 7 7.5665 -8.6454 8.6509 20 14 6.6903 -11.2319 8.1895 21 1 7.1052 -11.9429 6.9536 22 1 7.5974 -11.6053 9.3043 23 1 5.2976 -11.6137 8.5363 24 6 2.4152 -1.2455 3.4386 25 6 1.7476 -0.3086 2.4561 26 8 1.0635 0.6453 2.7610 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.6628 -1.7733 0.4344 35 1 2.2692 -2.7686 0.9488 36 1 3.0583 -4.0773 2.5587 37 1 3.9853 -5.7046 3.9523 38 1 6.4245 -5.1105 5.2461 39 1 5.0991 -4.8682 6.4093 40 1 6.6575 -6.8994 7.2490 41 1 8.1025 -9.0551 9.3478 42 1 2.8976 -0.6809 4.2365 43 1 1.6888 -1.9448 3.8527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345390301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:23 Heat of formation + Delta-G solvation = -125.736887 kcal Electronic energy + Delta-G solvation = -25319.467180 eV Core-core repulsion = 21398.587456 eV Total energy + Delta-G solvation = -3920.879725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87120 -40.95884 -39.95866 -37.74187 -36.59681 -36.16980 -35.23871 -34.08294 -33.32946 -30.55017 -29.20323 -28.13593 -28.09586 -26.28908 -23.45702 -23.04600 -21.91359 -21.32269 -20.16408 -19.94810 -19.55155 -17.94117 -17.56789 -17.36478 -17.12084 -16.76798 -16.41697 -16.27498 -15.78628 -15.68145 -15.23827 -15.10629 -14.92809 -14.71907 -14.60388 -14.47149 -13.90869 -13.68654 -13.60256 -13.51442 -13.08093 -12.96933 -12.89025 -12.78247 -12.44579 -12.33343 -12.18795 -12.12645 -12.10276 -11.53486 -11.44279 -10.85117 -10.52095 -10.37994 -10.07861 -9.85301 -9.74912 -8.48628 -5.98673 1.40024 1.42794 1.47809 1.51032 1.56421 1.92975 1.98542 2.13531 2.30348 3.01927 3.18862 3.25387 3.37469 3.52083 3.81350 3.97237 4.03504 4.12205 4.24435 4.31534 4.48309 4.50982 4.53698 4.57112 4.73382 4.74552 4.81002 4.86013 4.90532 4.92425 5.24789 5.31561 5.33889 5.40850 5.44438 5.66060 5.93139 5.97155 6.08596 6.50740 7.04377 7.06038 7.11815 7.45825 7.55300 7.97529 8.67922 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.001993 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.452545 B =14042.581333 C =14268.716552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 C -0.166 4.166 4 N -0.609 5.609 5 C 0.104 3.896 6 C 0.162 3.838 7 H 0.102 0.898 8 N -0.718 5.718 9 C 0.708 3.292 10 O -0.627 6.627 11 N -0.722 5.722 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.623 6.623 15 N -0.561 5.561 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.270 1.270 24 C -0.169 4.169 25 C 0.518 3.482 26 O -0.570 6.570 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.416 0.584 37 H 0.412 0.588 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.399 0.601 41 H 0.279 0.721 42 H 0.091 0.909 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 14.127 -18.758 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 C -0.224 4.224 4 N -0.343 5.343 5 C -0.018 4.018 6 C 0.056 3.944 7 H 0.120 0.880 8 N -0.375 5.375 9 C 0.408 3.592 10 O -0.508 6.508 11 N -0.379 5.379 12 C 0.013 3.987 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.196 5.196 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.213 4.213 19 N -0.556 5.556 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.196 1.196 24 C -0.211 4.211 25 C 0.307 3.693 26 O -0.449 6.449 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.254 0.746 37 H 0.250 0.750 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.110 14.902 -18.460 25.413 hybrid contribution -0.088 -1.052 0.666 1.249 sum -9.198 13.850 -17.794 24.352 Atomic orbital electron populations 1.22151 0.94946 1.02474 1.02666 1.21208 0.94339 0.93157 0.86745 1.22163 1.01501 0.96037 1.02671 1.48545 1.50745 1.29202 1.05839 1.22441 0.95126 0.88324 0.95942 1.21491 0.99000 0.80900 0.93040 0.88002 1.44721 1.46862 1.09308 1.36618 1.15872 0.80420 0.82125 0.80770 1.90914 1.50769 1.49826 1.59287 1.44655 1.47922 1.07551 1.37804 1.20575 0.95607 0.91237 0.91263 1.20449 0.83918 0.90231 0.83301 1.90468 1.44561 1.65182 1.50941 1.41842 1.38700 1.08393 1.30671 1.19697 1.25531 0.83823 1.17521 0.89479 1.26125 0.95070 1.04927 0.95131 1.69675 1.26547 1.38197 1.21213 0.84931 0.78412 0.76565 0.78102 1.19429 1.19820 1.19557 1.22844 0.99944 0.99456 0.98816 1.20973 0.79537 0.84102 0.84733 1.90677 1.41259 1.30754 1.82219 0.94210 0.89587 0.91984 0.85830 0.92060 0.89541 0.94227 0.86577 0.87842 0.74610 0.75031 0.88885 0.89152 0.76717 0.91134 0.89017 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.20 71.98 0.66 -1.40 16 2 C 0.15 1.61 3.47 44.99 0.16 1.76 16 3 C -0.17 -2.13 9.20 71.98 0.66 -1.47 16 4 N -0.61 -8.39 2.83 -794.05 -2.25 -10.64 16 5 C 0.10 0.85 7.02 86.83 0.61 1.46 16 6 C 0.16 2.45 3.43 46.05 0.16 2.60 16 7 H 0.10 1.83 7.72 -2.38 -0.02 1.81 16 8 N -0.72 -12.07 5.19 -452.76 -2.35 -14.42 16 9 C 0.71 19.18 8.56 179.05 1.53 20.71 16 10 O -0.63 -21.70 16.09 -3.97 -0.06 -21.76 16 11 N -0.72 -21.07 5.53 -482.31 -2.67 -23.73 16 12 C 0.14 4.87 6.15 85.64 0.53 5.39 16 13 C 0.43 19.14 7.85 87.66 0.69 19.83 16 14 O -0.62 -30.67 15.24 -3.08 -0.05 -30.72 16 15 N -0.56 -27.37 5.29 -306.98 -1.62 -28.99 16 16 C -0.34 -18.12 9.68 84.04 0.81 -17.31 16 17 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 19 N -0.92 -48.09 13.05 21.66 0.28 -47.81 16 20 Si 1.00 41.07 29.55 68.60 2.03 43.10 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 C -0.17 -3.24 6.59 30.59 0.20 -3.04 16 25 C 0.52 11.09 7.41 87.90 0.65 11.74 16 26 O -0.57 -16.90 15.12 -3.04 -0.05 -16.95 16 27 H 0.04 0.78 6.77 -2.38 -0.02 0.76 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.12 0.57 8.07 -2.38 -0.02 0.55 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 0.79 6.80 -2.39 -0.02 0.77 16 34 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.10 0.42 7.77 -2.39 -0.02 0.40 16 36 H 0.42 4.49 8.38 -92.71 -0.78 3.72 16 37 H 0.41 11.48 7.45 -92.70 -0.69 10.79 16 38 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 41 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.11 2.05 8.08 -2.39 -0.02 2.04 16 Total: -1.00 -73.37 362.81 -0.74 -74.11 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -1.13 Total: 37.67 kcal Atomic # 6 Polarization: 33.01 SS G_CDS: 7.13 Total: 40.14 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -8.61 Total: -125.59 kcal Atomic # 8 Polarization: -69.28 SS G_CDS: -0.16 Total: -69.43 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -73.37 -0.74 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345390301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.625 kcal (2) G-P(sol) polarization free energy of solvation -73.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds