Wall clock time and date at job start Fri Apr 10 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99720 * 2 1 4 4 O 1.20828 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00199 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47327 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00217 * 95.51149 * 6 5 3 8 8 H 1.07997 * 119.99879 * 212.93681 * 7 6 5 9 9 C 1.38958 * 119.99990 * 32.65284 * 7 6 5 10 10 N 1.31408 * 120.00249 * 208.57319 * 9 7 6 11 11 Si 1.86798 * 119.99706 * 28.57700 * 9 7 6 12 12 H 1.48498 * 109.47378 * 0.44441 * 11 9 7 13 13 H 1.48496 * 109.47254 * 120.44430 * 11 9 7 14 14 H 1.48496 * 109.47299 * 240.44511 * 11 9 7 15 15 C 1.34771 * 119.99974 * 275.51035 * 6 5 3 16 16 O 1.21298 * 120.00289 * 4.81939 * 15 6 5 17 17 C 1.50702 * 120.00090 * 184.82581 * 15 6 5 18 18 H 1.08996 * 109.46937 * 324.48345 * 17 15 6 19 19 C 1.52992 * 109.47404 * 84.48407 * 17 15 6 20 20 C 1.53002 * 109.47321 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.46970 * 299.99789 * 20 19 17 22 22 C 1.53002 * 109.46843 * 59.99929 * 21 20 19 23 23 H 1.09005 * 109.47004 * 60.00179 * 22 21 20 24 24 C 1.50702 * 109.46960 * 179.97438 * 22 21 20 25 25 N 1.34778 * 119.99904 * 299.99904 * 24 22 21 26 26 O 1.21280 * 120.00074 * 120.00608 * 24 22 21 27 27 C 1.52995 * 109.47516 * 300.00058 * 22 21 20 28 28 H 1.08994 * 109.46958 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47749 * 300.00051 * 1 2 3 30 30 H 1.09004 * 109.47355 * 60.00722 * 1 2 3 31 31 H 1.09005 * 109.47251 * 59.99153 * 5 3 2 32 32 H 1.09005 * 109.46714 * 300.00049 * 5 3 2 33 33 H 0.97001 * 119.99902 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.47586 * 300.00265 * 19 17 15 35 35 H 1.09005 * 109.46995 * 59.99851 * 19 17 15 36 36 H 1.08996 * 109.47116 * 59.99879 * 20 19 17 37 37 H 1.08997 * 109.47513 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.47087 * 179.97438 * 21 20 19 39 39 H 1.08996 * 109.47274 * 299.99993 * 21 20 19 40 40 H 0.97001 * 120.00175 * 0.02562 * 25 24 22 41 41 H 0.97001 * 119.99765 * 180.02562 * 25 24 22 42 42 H 1.09005 * 109.47083 * 300.00072 * 27 22 21 43 43 H 1.08999 * 109.47730 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.2857 3.3053 1.1804 8 1 4.0765 4.3576 1.3039 9 6 4.8577 2.5838 2.2212 10 7 4.6507 2.9501 3.4662 11 14 5.9209 1.0933 1.8507 12 1 6.0061 0.8991 0.3809 13 1 7.2832 1.3078 2.4013 14 1 5.3188 -0.1119 2.4751 15 6 4.0647 3.3576 -1.1630 16 8 3.7125 2.8323 -2.1981 17 6 4.5953 4.7680 -1.1765 18 1 4.2806 5.2832 -0.2690 19 6 6.1236 4.7374 -1.2415 20 6 6.6624 6.1693 -1.2545 21 6 6.1146 6.9093 -2.4766 22 6 4.5863 6.9399 -2.4115 23 1 4.2715 7.4548 -1.5038 24 6 4.0468 7.6692 -3.6149 25 7 4.3892 8.9543 -3.8335 26 8 3.3044 7.0998 -4.3866 27 6 4.0475 5.5080 -2.3985 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 5.0497 2.4463 4.1927 34 1 6.5139 4.2106 -0.3708 35 1 6.4383 4.2221 -2.1491 36 1 6.3476 6.6842 -0.3468 37 1 7.7511 6.1476 -1.3014 38 1 6.4980 7.9295 -2.4856 39 1 6.4294 6.3944 -3.3843 40 1 4.9832 9.4097 -3.2164 41 1 4.0416 9.4238 -4.6078 42 1 4.3622 4.9931 -3.3062 43 1 2.9587 5.5298 -2.3526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345929702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:37 Heat of formation + Delta-G solvation = -163.168854 kcal Electronic energy + Delta-G solvation = -27458.919491 eV Core-core repulsion = 23504.123843 eV Total energy + Delta-G solvation = -3954.795648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.23011 -39.80703 -38.76992 -36.84513 -35.77730 -34.85284 -33.68555 -32.07581 -30.95550 -30.54853 -28.71056 -26.55132 -25.02287 -23.75368 -22.76127 -21.03957 -20.46558 -19.48005 -18.97772 -17.65837 -17.33912 -17.07706 -16.52922 -16.20406 -15.78872 -15.41172 -15.16446 -15.05381 -14.49583 -14.18241 -14.01154 -13.63642 -13.35884 -13.18734 -12.87067 -12.81183 -12.55373 -12.27737 -12.08788 -11.79270 -11.73173 -11.46199 -11.09685 -11.04524 -10.84137 -10.67792 -10.42377 -10.29917 -10.23201 -10.16456 -9.86066 -9.80792 -9.68538 -9.55507 -9.28924 -8.59718 -8.01594 -6.61794 -4.11713 2.73324 2.87825 3.01370 3.06093 3.16707 3.19616 3.55038 3.73373 4.00095 4.28166 4.76416 4.80904 4.93562 4.98406 5.38220 5.40732 5.45906 5.48238 5.49320 5.58496 5.67913 5.69333 5.71997 5.82632 5.83371 5.85978 5.95893 6.11625 6.23147 6.33165 6.41870 6.53543 6.60936 6.75394 6.82414 6.89345 6.92941 7.11268 7.32374 7.93401 8.14067 8.32234 8.44596 8.84756 9.22597 9.55960 10.48444 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.004991 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.720321 B = 5609.261909 C = 6981.440058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.371 6.371 3 C 0.447 3.553 4 O -0.487 6.487 5 C 0.123 3.877 6 N -0.447 5.447 7 C -0.344 4.344 8 H 0.109 0.891 9 C 0.068 3.932 10 N -0.842 5.842 11 Si 0.848 3.152 12 H -0.255 1.255 13 H -0.277 1.277 14 H -0.274 1.274 15 C 0.497 3.503 16 O -0.587 6.587 17 C -0.084 4.084 18 H 0.097 0.903 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.107 4.107 23 H 0.099 0.901 24 C 0.521 3.479 25 N -0.861 5.861 26 O -0.538 6.538 27 C -0.080 4.080 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.276 0.724 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.397 0.603 42 H 0.076 0.924 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 5.604 -5.866 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.287 3.713 4 O -0.372 6.372 5 C -0.002 4.002 6 N -0.167 5.167 7 C -0.470 4.470 8 H 0.126 0.874 9 C -0.141 4.141 10 N -0.476 5.476 11 Si 0.673 3.327 12 H -0.179 1.179 13 H -0.203 1.203 14 H -0.199 1.199 15 C 0.287 3.713 16 O -0.471 6.471 17 C -0.105 4.105 18 H 0.115 0.885 19 C -0.143 4.143 20 C -0.151 4.151 21 C -0.146 4.146 22 C -0.129 4.129 23 H 0.117 0.883 24 C 0.306 3.694 25 N -0.425 5.425 26 O -0.414 6.414 27 C -0.118 4.118 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.228 0.772 41 H 0.227 0.773 42 H 0.095 0.905 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.591 5.088 -6.532 8.676 hybrid contribution 0.374 -0.246 0.318 0.549 sum 2.965 4.843 -6.214 8.418 Atomic orbital electron populations 1.23123 0.77626 1.02758 1.02247 1.86518 1.22639 1.34628 1.84999 1.24843 0.92944 0.81202 0.72281 1.90613 1.66561 1.36256 1.43747 1.21261 0.86548 0.88395 1.04043 1.43420 1.57891 1.08308 1.07129 1.19040 1.41955 0.97419 0.88606 0.87355 1.25285 0.96436 0.97790 0.94548 1.69877 1.38505 1.40499 0.98713 0.87277 0.82040 0.83033 0.80313 1.17876 1.20337 1.19949 1.20337 0.80020 0.88527 0.82411 1.90566 1.53076 1.70717 1.32743 1.21001 0.96235 0.93635 0.99633 0.88472 1.21389 0.93626 0.96459 1.02831 1.21506 0.99873 0.96159 0.97553 1.21542 0.92626 1.00432 0.99953 1.21390 0.97048 0.98136 0.96309 0.88312 1.20844 0.79860 0.81649 0.87043 1.43934 1.53398 1.13929 1.31202 1.90755 1.36004 1.66935 1.47682 1.21173 1.00713 0.91303 0.98655 0.88788 0.92240 0.92335 0.87445 0.88285 0.91368 0.90158 0.92167 0.91273 0.91655 0.91991 0.91459 0.77204 0.77320 0.90518 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -7.16 10.57 -39.26 -0.41 -7.58 16 3 C 0.45 10.19 7.99 36.01 0.29 10.47 16 4 O -0.49 -12.44 16.05 -18.75 -0.30 -12.74 16 5 C 0.12 2.78 4.24 -5.20 -0.02 2.76 16 6 N -0.45 -10.70 1.79 -116.09 -0.21 -10.91 16 7 C -0.34 -8.58 8.93 -14.93 -0.13 -8.71 16 8 H 0.11 2.83 6.52 -52.49 -0.34 2.49 16 9 C 0.07 1.70 5.18 -17.47 -0.09 1.60 16 10 N -0.84 -22.15 13.96 55.50 0.77 -21.38 16 11 Si 0.85 18.45 25.25 -169.99 -4.29 14.16 16 12 H -0.25 -5.41 6.46 56.52 0.37 -5.04 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 C 0.50 11.59 6.55 -10.99 -0.07 11.52 16 16 O -0.59 -15.02 15.81 5.54 0.09 -14.93 16 17 C -0.08 -1.60 1.87 -91.77 -0.17 -1.77 16 18 H 0.10 1.88 6.31 -51.93 -0.33 1.55 16 19 C -0.11 -1.71 5.18 -26.73 -0.14 -1.85 16 20 C -0.11 -1.39 5.92 -26.73 -0.16 -1.54 16 21 C -0.11 -1.19 5.10 -26.73 -0.14 -1.33 16 22 C -0.11 -1.43 2.52 -91.77 -0.23 -1.67 16 23 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 24 C 0.52 7.20 7.43 -10.98 -0.08 7.12 16 25 N -0.86 -7.57 8.77 31.22 0.27 -7.30 16 26 O -0.54 -10.10 16.82 5.56 0.09 -10.00 16 27 C -0.08 -1.44 3.30 -26.73 -0.09 -1.53 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.11 2.26 7.67 -51.93 -0.40 1.86 16 32 H 0.10 2.17 3.72 -51.93 -0.19 1.98 16 33 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.08 1.41 7.97 -51.93 -0.41 0.99 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.40 2.28 8.25 -40.82 -0.34 1.94 16 41 H 0.40 3.05 8.93 -40.82 -0.36 2.68 16 42 H 0.08 1.52 7.83 -51.93 -0.41 1.11 16 43 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -33.97 350.74 -4.82 -38.78 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.15 Total: 9.92 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 0.03 Total: 16.69 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.84 Total: -39.59 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.53 Total: -45.26 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.29 Total: 14.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.97 -4.82 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345929702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.384 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds