Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 10 10 C 1.53007 * 109.46904 * 299.99767 * 9 8 6 11 11 C 1.53001 * 109.47020 * 59.99567 * 9 8 6 12 12 O 1.42895 * 109.47074 * 60.00193 * 11 9 8 13 13 C 1.52990 * 109.47304 * 179.97438 * 9 8 6 14 14 O 1.42899 * 109.47434 * 179.97438 * 13 9 8 15 15 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 16 16 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 17 17 C 1.46503 * 125.97580 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47232 * 270.00070 * 17 16 2 19 19 H 1.08004 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00064 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99863 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47161 * 89.99998 * 22 20 18 24 24 H 1.48501 * 109.47106 * 210.00045 * 22 20 18 25 25 H 1.48498 * 109.47068 * 329.99836 * 22 20 18 26 26 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 27 27 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 28 28 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 29 29 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 31 31 H 0.97000 * 119.99736 * 0.26820 * 8 6 5 32 32 H 1.09001 * 109.46852 * 59.99838 * 10 9 8 33 33 H 1.08998 * 109.46963 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.46582 * 300.00210 * 10 9 8 35 35 H 1.08998 * 109.46818 * 180.02562 * 11 9 8 36 36 H 1.09008 * 109.47076 * 299.99893 * 11 9 8 37 37 H 0.96704 * 113.99918 * 179.97438 * 12 11 9 38 38 H 1.09006 * 109.47037 * 299.99466 * 13 9 8 39 39 H 1.09002 * 109.47663 * 59.99467 * 13 9 8 40 40 H 0.96695 * 114.00682 * 179.97438 * 14 13 9 41 41 H 1.09001 * 109.47222 * 29.99739 * 17 16 2 42 42 H 1.08997 * 109.47398 * 150.00005 * 17 16 2 43 43 H 0.97000 * 120.00157 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 5.5813 5.0621 -0.0152 10 6 4.8140 5.4954 -1.2661 11 6 4.8100 5.4972 1.2324 12 8 5.5265 5.0925 2.4006 13 6 6.9645 5.7158 -0.0129 14 8 6.8196 7.1374 -0.0147 15 7 3.6337 -0.6576 0.0035 16 7 2.3017 -1.0909 0.0059 17 6 1.8501 -2.4846 0.0140 18 6 1.6957 -2.9544 1.4375 19 1 1.9120 -2.2819 2.2546 20 6 1.2775 -4.2423 1.6970 21 7 1.1433 -4.6524 2.9393 22 14 0.9028 -5.4051 0.2839 23 1 2.1353 -6.1453 -0.0882 24 1 -0.1467 -6.3693 0.7012 25 1 0.4219 -4.6252 -0.8847 26 1 -0.3632 0.0056 1.0277 27 1 -0.3633 0.8871 -0.5187 28 1 -0.3633 -0.8927 -0.5089 29 1 1.9721 2.1210 0.0004 30 1 5.6588 1.0777 -0.0066 31 1 6.6148 3.2074 -0.0122 32 1 3.8285 5.0296 -1.2673 33 1 4.7031 6.5797 -1.2668 34 1 5.3636 5.1853 -2.1549 35 1 4.6990 6.5815 1.2312 36 1 3.8244 5.0314 1.2311 37 1 5.0949 5.3363 3.2309 38 1 7.5107 5.4071 0.8785 39 1 7.5145 5.4058 -0.9015 40 1 7.6584 7.6183 -0.0130 41 1 0.8912 -2.5588 -0.4990 42 1 2.5845 -3.1075 -0.4966 43 1 0.8494 -5.5586 3.1218 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348180189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -37.797414 kcal Electronic energy + Delta-G solvation = -26315.644285 eV Core-core repulsion = 22398.577902 eV Total energy + Delta-G solvation = -3917.066383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93293 -40.09617 -38.17151 -36.37373 -35.16840 -34.59924 -33.32697 -31.85147 -31.14471 -30.56119 -27.10537 -26.76644 -26.36320 -26.02751 -23.06084 -21.93356 -20.09728 -19.93529 -19.33977 -17.95800 -17.91168 -17.30717 -17.10087 -16.23513 -15.70996 -15.55598 -15.26825 -15.05558 -14.64381 -14.49537 -14.03054 -13.85253 -13.66438 -13.15095 -13.05842 -12.62133 -12.58461 -12.38529 -12.34391 -12.13809 -11.98151 -11.84584 -11.55910 -11.20662 -10.90241 -10.78983 -10.56514 -10.45336 -10.19923 -9.92496 -9.85857 -9.57098 -9.47964 -9.21109 -8.76993 -7.94719 -7.40715 -6.24876 -4.27696 2.26594 2.60941 3.08494 3.16335 3.22209 3.23520 3.42892 3.81248 3.91852 4.13506 4.22334 4.23860 4.58601 4.67035 4.94560 5.03736 5.22974 5.33265 5.41736 5.48451 5.59489 5.64870 5.67770 5.81264 5.86365 6.06585 6.16881 6.19223 6.36536 6.40621 6.50577 6.52263 6.63327 6.81660 7.05712 7.19542 7.30784 7.49610 7.52399 7.89357 7.93992 8.33458 8.60866 8.63575 8.81088 9.30452 10.87736 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.030561 B = 0.002701 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.983290 B =10364.001170 C =10488.301753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 C -0.285 4.285 4 C 0.288 3.712 5 N -0.643 5.643 6 C 0.723 3.277 7 O -0.564 6.564 8 N -0.730 5.730 9 C 0.204 3.796 10 C -0.162 4.162 11 C 0.064 3.936 12 O -0.572 6.572 13 C 0.080 3.920 14 O -0.563 6.563 15 N -0.322 5.322 16 N -0.319 5.319 17 C 0.232 3.768 18 C -0.540 4.540 19 H 0.081 0.919 20 C 0.078 3.922 21 N -0.887 5.887 22 Si 0.874 3.126 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.264 1.264 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.163 0.837 30 H 0.406 0.594 31 H 0.396 0.604 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.378 0.622 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.383 0.617 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.780 21.062 -7.511 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.034 3.966 5 N -0.293 5.293 6 C 0.422 3.578 7 O -0.440 6.440 8 N -0.387 5.387 9 C 0.117 3.883 10 C -0.220 4.220 11 C -0.015 4.015 12 O -0.377 6.377 13 C 0.001 3.999 14 O -0.368 6.368 15 N -0.152 5.152 16 N -0.101 5.101 17 C 0.113 3.887 18 C -0.578 4.578 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.524 5.524 22 Si 0.700 3.300 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.180 0.820 30 H 0.241 0.759 31 H 0.230 0.770 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.231 0.769 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.174 19.821 -7.848 23.209 hybrid contribution 0.647 -0.237 -0.039 0.690 sum 9.821 19.584 -7.887 23.285 Atomic orbital electron populations 1.20344 0.87872 1.02654 1.03406 1.21051 0.94863 0.87008 1.00784 1.21240 0.89612 0.99827 1.20923 1.18644 0.86636 0.89169 1.02147 1.41395 1.07562 1.03736 1.76603 1.15453 0.84537 0.80189 0.77587 1.90795 1.23644 1.73119 1.56430 1.44814 1.07750 1.05384 1.80719 1.19963 0.94747 0.78160 0.95403 1.22160 1.02403 1.02259 0.95138 1.22630 0.95954 0.98497 0.84405 1.86371 1.51825 1.83435 1.16089 1.22115 0.95490 0.81697 1.00579 1.86400 1.35531 1.17152 1.97750 1.77253 0.99386 1.08507 1.30102 1.48476 1.01187 1.06956 1.53477 1.19979 0.95246 0.73817 0.99648 1.21188 1.47187 0.99020 0.90387 0.90119 1.24811 0.94513 0.97484 0.95762 1.69873 1.45815 1.18303 1.18439 0.86888 0.78957 0.81496 0.82647 1.19662 1.20567 1.18876 0.90132 0.90686 0.91176 0.82008 0.75931 0.77027 0.89627 0.90933 0.92277 0.92516 0.90835 0.77481 0.92047 0.93180 0.76933 0.93259 0.93728 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.01 0.36 -1.06 16 2 C 0.09 1.95 6.93 -82.28 -0.57 1.38 16 3 C -0.28 -5.82 9.52 -39.83 -0.38 -6.20 16 4 C 0.29 5.85 8.11 -154.36 -1.25 4.60 16 5 N -0.64 -10.08 5.46 -15.51 -0.08 -10.16 16 6 C 0.72 10.63 7.95 -86.92 -0.69 9.94 16 7 O -0.56 -9.70 9.67 5.28 0.05 -9.65 16 8 N -0.73 -7.82 4.97 -52.42 -0.26 -8.08 16 9 C 0.20 2.07 0.67 -131.82 -0.09 1.98 16 10 C -0.16 -1.68 8.26 37.16 0.31 -1.37 16 11 C 0.06 0.72 5.59 37.16 0.21 0.92 16 12 O -0.57 -6.29 12.85 -35.23 -0.45 -6.74 16 13 C 0.08 0.60 5.88 37.15 0.22 0.82 16 14 O -0.56 -4.06 12.31 -35.23 -0.43 -4.49 16 15 N -0.32 -7.38 12.59 31.44 0.40 -6.99 16 16 N -0.32 -7.46 3.59 -58.32 -0.21 -7.67 16 17 C 0.23 5.63 5.06 -5.19 -0.03 5.60 16 18 C -0.54 -15.22 9.94 -34.44 -0.34 -15.56 16 19 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 22 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.14 7.07 -51.93 -0.37 0.78 16 29 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 30 H 0.41 5.15 8.84 -40.82 -0.36 4.79 16 31 H 0.40 3.17 8.49 -40.82 -0.35 2.82 16 32 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16 33 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 36 H 0.07 1.00 6.16 -51.92 -0.32 0.68 16 37 H 0.38 2.87 9.12 45.56 0.42 3.29 16 38 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.38 1.03 9.12 45.56 0.42 1.44 16 41 H 0.05 1.11 6.10 -51.93 -0.32 0.80 16 42 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -36.01 353.62 -6.29 -42.30 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.38 Total: 13.13 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.35 Total: 3.16 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.61 Total: -58.62 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.84 Total: -20.88 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.01 -6.29 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348180189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.502 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds