Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 10 10 C 1.53007 * 109.46904 * 299.99767 * 9 8 6 11 11 C 1.53001 * 109.47020 * 59.99567 * 9 8 6 12 12 O 1.42895 * 109.47074 * 60.00193 * 11 9 8 13 13 C 1.52990 * 109.47304 * 179.97438 * 9 8 6 14 14 O 1.42899 * 109.47434 * 179.97438 * 13 9 8 15 15 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 16 16 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 17 17 C 1.46503 * 125.97580 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47232 * 270.00070 * 17 16 2 19 19 H 1.08004 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00064 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99863 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47161 * 89.99998 * 22 20 18 24 24 H 1.48501 * 109.47106 * 210.00045 * 22 20 18 25 25 H 1.48498 * 109.47068 * 329.99836 * 22 20 18 26 26 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 27 27 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 28 28 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 29 29 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 31 31 H 0.97000 * 119.99736 * 0.26820 * 8 6 5 32 32 H 1.09001 * 109.46852 * 59.99838 * 10 9 8 33 33 H 1.08998 * 109.46963 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.46582 * 300.00210 * 10 9 8 35 35 H 1.08998 * 109.46818 * 180.02562 * 11 9 8 36 36 H 1.09008 * 109.47076 * 299.99893 * 11 9 8 37 37 H 0.96704 * 113.99918 * 179.97438 * 12 11 9 38 38 H 1.09006 * 109.47037 * 299.99466 * 13 9 8 39 39 H 1.09002 * 109.47663 * 59.99467 * 13 9 8 40 40 H 0.96695 * 114.00682 * 179.97438 * 14 13 9 41 41 H 1.09001 * 109.47222 * 29.99739 * 17 16 2 42 42 H 1.08997 * 109.47398 * 150.00005 * 17 16 2 43 43 H 0.97000 * 120.00157 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 5.5813 5.0621 -0.0152 10 6 4.8140 5.4954 -1.2661 11 6 4.8100 5.4972 1.2324 12 8 5.5265 5.0925 2.4006 13 6 6.9645 5.7158 -0.0129 14 8 6.8196 7.1374 -0.0147 15 7 3.6337 -0.6576 0.0035 16 7 2.3017 -1.0909 0.0059 17 6 1.8501 -2.4846 0.0140 18 6 1.6957 -2.9544 1.4375 19 1 1.9120 -2.2819 2.2546 20 6 1.2775 -4.2423 1.6970 21 7 1.1433 -4.6524 2.9393 22 14 0.9028 -5.4051 0.2839 23 1 2.1353 -6.1453 -0.0882 24 1 -0.1467 -6.3693 0.7012 25 1 0.4219 -4.6252 -0.8847 26 1 -0.3632 0.0056 1.0277 27 1 -0.3633 0.8871 -0.5187 28 1 -0.3633 -0.8927 -0.5089 29 1 1.9721 2.1210 0.0004 30 1 5.6588 1.0777 -0.0066 31 1 6.6148 3.2074 -0.0122 32 1 3.8285 5.0296 -1.2673 33 1 4.7031 6.5797 -1.2668 34 1 5.3636 5.1853 -2.1549 35 1 4.6990 6.5815 1.2312 36 1 3.8244 5.0314 1.2311 37 1 5.0949 5.3363 3.2309 38 1 7.5107 5.4071 0.8785 39 1 7.5145 5.4058 -0.9015 40 1 7.6584 7.6183 -0.0130 41 1 0.8912 -2.5588 -0.4990 42 1 2.5845 -3.1075 -0.4966 43 1 0.8494 -5.5586 3.1218 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348180189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -70.117579 kcal Electronic energy + Delta-G solvation = -26317.045792 eV Core-core repulsion = 22398.577902 eV Total energy + Delta-G solvation = -3918.467890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36449 -41.34598 -39.07886 -37.08303 -36.39358 -35.72791 -35.23881 -33.40177 -32.77697 -31.74402 -28.89981 -27.86629 -27.55100 -26.84793 -24.76403 -23.38213 -21.35066 -21.30713 -20.57341 -19.22824 -19.17262 -18.58955 -18.13549 -17.63535 -17.09384 -16.77995 -16.30022 -16.25774 -16.08244 -15.61849 -15.49173 -15.10243 -14.83209 -14.56920 -14.35316 -13.85640 -13.80771 -13.76269 -13.58540 -13.41413 -13.25581 -13.06338 -12.81427 -12.74653 -12.56250 -12.24313 -11.82334 -11.73191 -11.53323 -11.42374 -11.17705 -10.93320 -10.89316 -10.60407 -10.20421 -9.56333 -9.02912 -8.39762 -6.50775 0.98824 1.06788 1.36041 1.38083 1.47792 1.67553 2.00822 2.27278 2.40094 2.92695 2.97764 3.24000 3.51259 3.82405 3.85916 4.03998 4.12673 4.28075 4.41316 4.53011 4.54381 4.58051 4.66163 4.76136 4.78853 4.81188 4.83553 4.87696 4.95955 5.02746 5.13781 5.20916 5.24667 5.37070 5.54488 5.84040 5.91431 6.03496 6.39137 6.52935 6.71982 6.80098 6.91424 7.11681 7.13385 7.44650 8.77056 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.030561 B = 0.002701 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.983290 B =10364.001170 C =10488.301753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.089 3.911 3 C -0.295 4.295 4 C 0.295 3.705 5 N -0.637 5.637 6 C 0.719 3.281 7 O -0.589 6.589 8 N -0.710 5.710 9 C 0.196 3.804 10 C -0.155 4.155 11 C 0.067 3.933 12 O -0.581 6.581 13 C 0.089 3.911 14 O -0.578 6.578 15 N -0.359 5.359 16 N -0.344 5.344 17 C 0.242 3.758 18 C -0.550 4.550 19 H 0.022 0.978 20 C 0.020 3.980 21 N -0.939 5.939 22 Si 0.952 3.048 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.233 1.233 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.168 0.832 30 H 0.420 0.580 31 H 0.412 0.588 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.404 0.596 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.447 21.843 -9.657 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.326 4.326 4 C 0.040 3.960 5 N -0.288 5.288 6 C 0.419 3.581 7 O -0.466 6.466 8 N -0.367 5.367 9 C 0.109 3.891 10 C -0.213 4.213 11 C -0.011 4.011 12 O -0.389 6.389 13 C 0.011 3.989 14 O -0.386 6.386 15 N -0.189 5.189 16 N -0.127 5.127 17 C 0.122 3.878 18 C -0.588 4.588 19 H 0.041 0.959 20 C -0.179 4.179 21 N -0.577 5.577 22 Si 0.773 3.227 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.156 1.156 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.185 0.815 30 H 0.257 0.743 31 H 0.248 0.752 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.908 20.669 -9.991 25.004 hybrid contribution 0.513 -0.273 0.756 0.953 sum 10.420 20.396 -9.235 24.696 Atomic orbital electron populations 1.20496 0.85237 1.04680 1.03741 1.21746 0.96666 0.86397 0.99298 1.21422 0.89883 0.99980 1.21305 1.18942 0.88101 0.88891 1.00070 1.41408 1.07057 1.03857 1.76527 1.15628 0.85146 0.79893 0.77447 1.90782 1.25046 1.73400 1.57394 1.44671 1.07434 1.05499 1.79132 1.20161 0.96628 0.77554 0.94734 1.22076 1.01048 1.02482 0.95701 1.22534 0.94798 0.98685 0.85115 1.86332 1.52098 1.83651 1.16775 1.21971 0.93331 0.81940 1.01688 1.86348 1.37529 1.16924 1.97787 1.77163 0.99747 1.09819 1.32206 1.48407 1.01802 1.07039 1.55424 1.19771 0.96412 0.74698 0.96940 1.21262 1.47612 0.98716 0.91196 0.95916 1.25847 0.93746 0.99299 0.99015 1.70035 1.47046 1.19204 1.21417 0.85665 0.79029 0.78746 0.79280 1.19055 1.19944 1.15602 0.90501 0.87386 0.90408 0.81495 0.74318 0.75158 0.92369 0.90190 0.91236 0.91691 0.93746 0.75964 0.91983 0.90950 0.74540 0.90802 0.93396 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.11 71.24 0.72 -1.99 16 2 C 0.09 3.69 6.93 41.39 0.29 3.98 16 3 C -0.30 -12.09 9.52 22.11 0.21 -11.88 16 4 C 0.30 12.06 8.11 133.31 1.08 13.15 16 5 N -0.64 -19.67 5.46 -321.23 -1.75 -21.42 16 6 C 0.72 20.72 7.95 179.05 1.42 22.14 16 7 O -0.59 -20.30 9.67 -4.01 -0.04 -20.34 16 8 N -0.71 -14.13 4.97 -438.01 -2.18 -16.31 16 9 C 0.20 3.66 0.67 3.60 0.00 3.66 16 10 C -0.15 -3.02 8.26 71.98 0.59 -2.43 16 11 C 0.07 1.46 5.59 71.98 0.40 1.87 16 12 O -0.58 -12.14 12.85 -148.98 -1.91 -14.05 16 13 C 0.09 1.10 5.88 71.98 0.42 1.52 16 14 O -0.58 -6.73 12.31 -148.98 -1.83 -8.56 16 15 N -0.36 -16.67 12.59 -54.43 -0.69 -17.35 16 16 N -0.34 -16.22 3.59 -338.44 -1.22 -17.44 16 17 C 0.24 11.62 5.06 85.63 0.43 12.06 16 18 C -0.55 -31.88 9.94 25.60 0.25 -31.62 16 19 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 20 C 0.02 1.16 5.47 84.66 0.46 1.62 16 21 N -0.94 -57.58 13.96 21.45 0.30 -57.28 16 22 Si 0.95 41.04 27.47 68.60 1.88 42.93 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.23 -8.84 6.54 99.48 0.65 -8.19 16 26 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.08 2.39 7.07 -2.39 -0.02 2.37 16 29 H 0.17 6.64 5.91 -2.91 -0.02 6.63 16 30 H 0.42 10.31 8.84 -92.71 -0.82 9.49 16 31 H 0.41 5.66 8.49 -92.71 -0.79 4.87 16 32 H 0.06 1.48 6.16 -2.39 -0.01 1.46 16 33 H 0.08 1.42 7.68 -2.39 -0.02 1.41 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.29 7.68 -2.39 -0.02 1.27 16 36 H 0.04 1.23 6.16 -2.38 -0.01 1.22 16 37 H 0.39 5.64 9.12 -74.05 -0.68 4.96 16 38 H 0.06 0.78 7.68 -2.38 -0.02 0.76 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.40 0.96 9.12 -74.06 -0.68 0.28 16 41 H 0.07 3.17 6.10 -2.39 -0.01 3.15 16 42 H 0.05 2.26 7.57 -2.39 -0.02 2.24 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -80.91 353.62 -3.06 -83.97 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -1.91 Total: 33.79 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.30 Total: 12.07 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -5.53 Total: -129.80 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -3.79 Total: -42.95 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.88 Total: 42.93 kcal Total: -80.91 -3.06 -83.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348180189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.852 kcal (2) G-P(sol) polarization free energy of solvation -80.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds