Wall clock time and date at job start Fri Apr 10 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 117.00233 * 2 1 4 4 O 1.20821 * 120.00013 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99959 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47199 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00157 * 264.08805 * 6 5 3 8 8 H 1.07998 * 119.99522 * 196.60405 * 7 6 5 9 9 C 1.38947 * 119.99913 * 16.60507 * 7 6 5 10 10 N 1.31405 * 120.00209 * 20.78978 * 9 7 6 11 11 Si 1.86803 * 119.99745 * 200.78683 * 9 7 6 12 12 H 1.48502 * 109.47275 * 60.00011 * 11 9 7 13 13 H 1.48500 * 109.47298 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47344 * 300.00253 * 11 9 7 15 15 C 1.34781 * 119.99699 * 84.08732 * 6 5 3 16 16 O 1.21286 * 119.99922 * 359.97438 * 15 6 5 17 17 C 1.50701 * 119.99903 * 180.02562 * 15 6 5 18 18 C 1.52999 * 109.46919 * 180.02562 * 17 15 6 19 19 C 1.52997 * 109.46871 * 180.02562 * 18 17 15 20 20 N 1.46508 * 109.46872 * 179.97438 * 19 18 17 21 21 C 1.34779 * 119.99441 * 179.97438 * 20 19 18 22 22 O 1.21273 * 120.00385 * 0.02562 * 21 20 19 23 23 C 1.50702 * 119.99288 * 180.02562 * 21 20 19 24 24 C 1.53010 * 117.49726 * 248.62027 * 23 21 20 25 25 C 1.53004 * 59.99939 * 252.51569 * 24 23 21 26 26 H 1.09001 * 109.47455 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47114 * 300.00242 * 1 2 3 28 28 H 1.09008 * 109.47012 * 59.99888 * 1 2 3 29 29 H 1.09000 * 109.47141 * 59.99790 * 5 3 2 30 30 H 1.08997 * 109.47259 * 299.99813 * 5 3 2 31 31 H 0.97003 * 119.99791 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47319 * 60.00064 * 17 15 6 33 33 H 1.09000 * 109.46881 * 299.99682 * 17 15 6 34 34 H 1.08998 * 109.47584 * 59.99639 * 18 17 15 35 35 H 1.09000 * 109.47043 * 299.99532 * 18 17 15 36 36 H 1.09004 * 109.47288 * 299.99534 * 19 18 17 37 37 H 1.08998 * 109.47434 * 59.99973 * 19 18 17 38 38 H 0.96998 * 119.99915 * 359.97438 * 20 19 18 39 39 H 1.08994 * 115.55450 * 34.32928 * 23 21 20 40 40 H 1.09004 * 117.49623 * 0.02562 * 24 23 21 41 41 H 1.08999 * 117.49980 * 145.02342 * 24 23 21 42 42 H 1.09000 * 117.49399 * 252.51225 * 25 24 23 43 43 H 1.08996 * 117.52087 * 107.48141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2940 3.3016 -1.1814 8 1 4.8475 4.2289 -1.1735 9 6 3.8982 2.7389 -2.3886 10 7 2.9097 1.8735 -2.4174 11 14 4.7712 3.2127 -3.9706 12 1 6.2104 2.8619 -3.8661 13 1 4.1647 2.4781 -5.1098 14 1 4.6330 4.6743 -4.1937 15 6 4.0571 3.3607 1.1605 16 8 3.7805 2.8106 2.2054 17 6 4.4839 4.8060 1.1597 18 6 4.4861 5.3378 2.5943 19 6 4.9188 6.8053 2.5935 20 7 4.9204 7.3148 3.9671 21 6 5.2713 8.5929 4.2113 22 8 5.5853 9.3214 3.2941 23 6 5.2735 9.1168 5.6244 24 6 4.2171 10.1607 5.9924 25 6 5.6813 10.5762 5.8361 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7805 -0.8891 30 1 3.9557 0.7809 0.8908 31 1 2.6337 1.4804 -3.2601 32 1 3.7887 5.3899 0.5565 33 1 5.4867 4.8885 0.7405 34 1 5.1815 4.7539 3.1973 35 1 3.4835 5.2553 3.0139 36 1 5.9214 6.8883 2.1737 37 1 4.2231 7.3890 1.9907 38 1 4.6689 6.7321 4.7007 39 1 5.5597 8.3978 6.3919 40 1 3.5204 10.4683 5.2126 41 1 3.8081 10.1285 7.0023 42 1 6.2356 10.8173 6.7432 43 1 5.9485 11.1572 4.9535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348783997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:41 Heat of formation + Delta-G solvation = -130.507930 kcal Electronic energy + Delta-G solvation = -25824.862758 eV Core-core repulsion = 21871.483395 eV Total energy + Delta-G solvation = -3953.379364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96646 -39.48497 -38.38566 -36.58322 -35.62607 -35.13410 -34.60752 -32.30089 -31.60790 -28.84622 -27.15515 -26.07752 -24.80181 -23.68639 -22.66784 -21.57885 -20.39019 -19.88963 -19.15228 -17.53236 -17.09707 -16.60889 -16.30375 -15.78353 -15.74716 -15.44503 -15.19080 -15.12551 -14.48789 -14.33138 -14.32202 -13.93440 -13.32166 -12.83498 -12.67630 -12.52111 -12.45730 -11.82705 -11.72369 -11.66170 -11.61909 -11.32056 -11.26619 -11.13084 -10.87003 -10.79465 -10.73051 -10.54015 -10.45547 -10.37754 -9.88687 -9.83335 -9.60051 -9.04340 -9.03489 -8.62313 -7.99891 -6.54172 -4.03131 2.43409 3.07089 3.09659 3.17185 3.18692 3.46812 3.65448 3.67874 3.98867 4.06330 4.49669 4.56972 4.62820 4.64845 4.92707 4.95646 5.26466 5.32417 5.33697 5.51272 5.54860 5.68626 5.69764 5.76505 5.87962 5.92313 5.92960 5.96262 6.05891 6.18350 6.29542 6.41411 6.48336 6.56585 6.64947 6.66615 7.30970 7.44208 7.49362 7.56789 8.19352 8.20298 8.94038 9.08900 9.32844 9.73573 10.53276 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002917 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.430142 B = 9595.530616 C =10915.219220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.500 6.500 5 C 0.156 3.844 6 N -0.429 5.429 7 C -0.338 4.338 8 H 0.105 0.895 9 C 0.038 3.962 10 N -0.869 5.869 11 Si 0.926 3.074 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.470 3.530 16 O -0.605 6.605 17 C -0.115 4.115 18 C -0.112 4.112 19 C 0.117 3.883 20 N -0.723 5.723 21 C 0.539 3.461 22 O -0.544 6.544 23 C -0.195 4.195 24 C -0.154 4.154 25 C -0.149 4.149 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.273 0.727 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 5.582 10.497 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.385 6.385 5 C 0.030 3.970 6 N -0.148 5.148 7 C -0.465 4.465 8 H 0.123 0.877 9 C -0.167 4.167 10 N -0.507 5.507 11 Si 0.752 3.248 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.260 3.740 16 O -0.492 6.492 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.006 4.006 20 N -0.373 5.373 21 C 0.325 3.675 22 O -0.422 6.422 23 C -0.216 4.216 24 C -0.191 4.191 25 C -0.187 4.187 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.067 6.009 10.142 11.968 hybrid contribution -0.196 -0.171 -0.803 0.844 sum 1.871 5.838 9.339 11.171 Atomic orbital electron populations 1.22931 0.78739 1.01803 1.01623 1.86457 1.21664 1.35525 1.85703 1.23971 0.92297 0.80541 0.70542 1.90508 1.66519 1.36394 1.45092 1.20476 0.87190 0.85788 1.03524 1.43419 1.57054 1.08056 1.06266 1.19623 1.34881 1.09721 0.82237 0.87690 1.25225 0.94797 0.97007 0.99685 1.69832 1.22801 1.29984 1.28090 0.86012 0.79538 0.78895 0.80374 1.19696 1.20928 1.19728 1.20147 0.82003 0.88289 0.83601 1.90526 1.55941 1.70644 1.32064 1.21239 1.03111 0.94811 0.96339 1.21500 1.02844 0.92686 0.97955 1.21490 1.02019 0.94948 0.82160 1.45987 1.68904 1.12120 1.10337 1.19653 0.76499 0.81768 0.89599 1.90694 1.48282 1.57158 1.46065 1.22218 1.08786 0.94591 0.96017 1.22940 0.92554 1.00498 1.03118 1.22943 0.97360 0.94413 1.03933 0.89601 0.93173 0.92629 0.85921 0.90081 0.91605 0.89289 0.89800 0.90986 0.90944 0.91360 0.91369 0.76353 0.85856 0.88222 0.87810 0.88001 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.11 10.57 -39.27 -0.41 -8.53 16 3 C 0.49 12.01 6.13 36.01 0.22 12.23 16 4 O -0.50 -13.89 15.79 -18.75 -0.30 -14.19 16 5 C 0.16 3.70 5.14 -5.19 -0.03 3.68 16 6 N -0.43 -10.54 2.18 -116.10 -0.25 -10.80 16 7 C -0.34 -8.24 9.15 -14.93 -0.14 -8.38 16 8 H 0.11 2.38 6.55 -52.49 -0.34 2.03 16 9 C 0.04 0.92 4.90 -17.47 -0.09 0.84 16 10 N -0.87 -22.23 9.24 55.50 0.51 -21.72 16 11 Si 0.93 18.95 29.60 -169.99 -5.03 13.92 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 C 0.47 10.98 7.42 -10.98 -0.08 10.90 16 16 O -0.61 -15.26 15.66 5.55 0.09 -15.18 16 17 C -0.11 -2.13 4.14 -27.88 -0.12 -2.24 16 18 C -0.11 -1.73 4.62 -26.73 -0.12 -1.85 16 19 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 20 N -0.72 -8.74 5.56 -60.29 -0.33 -9.07 16 21 C 0.54 7.07 7.61 -10.98 -0.08 6.99 16 22 O -0.54 -9.29 16.26 5.56 0.09 -9.20 16 23 C -0.19 -1.82 6.19 -91.76 -0.57 -2.39 16 24 C -0.15 -1.24 10.23 -26.72 -0.27 -1.51 16 25 C -0.15 -1.28 10.04 -26.73 -0.27 -1.55 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.05 1.00 8.13 -51.92 -0.42 0.58 16 29 H 0.12 2.89 6.34 -51.93 -0.33 2.56 16 30 H 0.08 1.79 7.61 -51.93 -0.40 1.40 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 32 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 33 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 39 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.11 1.10 7.67 -51.93 -0.40 0.71 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -33.22 368.18 -7.00 -40.22 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.41 Total: 8.85 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: -0.50 Total: 20.14 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.08 Total: -41.59 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.53 Total: -47.09 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.22 -7.00 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348783997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.289 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds