Wall clock time and date at job start Fri Apr 10 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 117.00233 * 2 1 4 4 O 1.20821 * 120.00013 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99959 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47199 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00157 * 264.08805 * 6 5 3 8 8 H 1.07998 * 119.99522 * 196.60405 * 7 6 5 9 9 C 1.38947 * 119.99913 * 16.60507 * 7 6 5 10 10 N 1.31405 * 120.00209 * 20.78978 * 9 7 6 11 11 Si 1.86803 * 119.99745 * 200.78683 * 9 7 6 12 12 H 1.48502 * 109.47275 * 60.00011 * 11 9 7 13 13 H 1.48500 * 109.47298 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47344 * 300.00253 * 11 9 7 15 15 C 1.34781 * 119.99699 * 84.08732 * 6 5 3 16 16 O 1.21286 * 119.99922 * 359.97438 * 15 6 5 17 17 C 1.50701 * 119.99903 * 180.02562 * 15 6 5 18 18 C 1.52999 * 109.46919 * 180.02562 * 17 15 6 19 19 C 1.52997 * 109.46871 * 180.02562 * 18 17 15 20 20 N 1.46508 * 109.46872 * 179.97438 * 19 18 17 21 21 C 1.34779 * 119.99441 * 179.97438 * 20 19 18 22 22 O 1.21273 * 120.00385 * 0.02562 * 21 20 19 23 23 C 1.50702 * 119.99288 * 180.02562 * 21 20 19 24 24 C 1.53010 * 117.49726 * 248.62027 * 23 21 20 25 25 C 1.53004 * 59.99939 * 252.51569 * 24 23 21 26 26 H 1.09001 * 109.47455 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47114 * 300.00242 * 1 2 3 28 28 H 1.09008 * 109.47012 * 59.99888 * 1 2 3 29 29 H 1.09000 * 109.47141 * 59.99790 * 5 3 2 30 30 H 1.08997 * 109.47259 * 299.99813 * 5 3 2 31 31 H 0.97003 * 119.99791 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47319 * 60.00064 * 17 15 6 33 33 H 1.09000 * 109.46881 * 299.99682 * 17 15 6 34 34 H 1.08998 * 109.47584 * 59.99639 * 18 17 15 35 35 H 1.09000 * 109.47043 * 299.99532 * 18 17 15 36 36 H 1.09004 * 109.47288 * 299.99534 * 19 18 17 37 37 H 1.08998 * 109.47434 * 59.99973 * 19 18 17 38 38 H 0.96998 * 119.99915 * 359.97438 * 20 19 18 39 39 H 1.08994 * 115.55450 * 34.32928 * 23 21 20 40 40 H 1.09004 * 117.49623 * 0.02562 * 24 23 21 41 41 H 1.08999 * 117.49980 * 145.02342 * 24 23 21 42 42 H 1.09000 * 117.49399 * 252.51225 * 25 24 23 43 43 H 1.08996 * 117.52087 * 107.48141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2940 3.3016 -1.1814 8 1 4.8475 4.2289 -1.1735 9 6 3.8982 2.7389 -2.3886 10 7 2.9097 1.8735 -2.4174 11 14 4.7712 3.2127 -3.9706 12 1 6.2104 2.8619 -3.8661 13 1 4.1647 2.4781 -5.1098 14 1 4.6330 4.6743 -4.1937 15 6 4.0571 3.3607 1.1605 16 8 3.7805 2.8106 2.2054 17 6 4.4839 4.8060 1.1597 18 6 4.4861 5.3378 2.5943 19 6 4.9188 6.8053 2.5935 20 7 4.9204 7.3148 3.9671 21 6 5.2713 8.5929 4.2113 22 8 5.5853 9.3214 3.2941 23 6 5.2735 9.1168 5.6244 24 6 4.2171 10.1607 5.9924 25 6 5.6813 10.5762 5.8361 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7805 -0.8891 30 1 3.9557 0.7809 0.8908 31 1 2.6337 1.4804 -3.2601 32 1 3.7887 5.3899 0.5565 33 1 5.4867 4.8885 0.7405 34 1 5.1815 4.7539 3.1973 35 1 3.4835 5.2553 3.0139 36 1 5.9214 6.8883 2.1737 37 1 4.2231 7.3890 1.9907 38 1 4.6689 6.7321 4.7007 39 1 5.5597 8.3978 6.3919 40 1 3.5204 10.4683 5.2126 41 1 3.8081 10.1285 7.0023 42 1 6.2356 10.8173 6.7432 43 1 5.9485 11.1572 4.9535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348783997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:41 Heat of formation + Delta-G solvation = -151.901505 kcal Electronic energy + Delta-G solvation = -25825.790453 eV Core-core repulsion = 21871.483395 eV Total energy + Delta-G solvation = -3954.307059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36143 -40.96016 -40.17437 -37.55945 -37.22527 -36.58071 -36.32134 -33.66158 -33.47020 -30.55076 -28.53159 -27.64926 -26.48321 -24.81676 -23.30012 -22.87676 -22.00363 -21.16511 -20.81638 -18.84843 -18.47640 -18.44158 -18.01288 -17.32768 -17.04926 -16.88658 -16.83780 -16.15136 -16.11169 -15.96364 -15.58362 -15.09980 -14.75736 -14.46090 -14.20198 -14.10809 -13.53459 -13.42580 -13.13442 -13.12380 -13.06046 -12.84164 -12.60105 -12.48562 -12.42525 -12.23168 -12.09143 -11.81151 -11.58447 -11.53388 -11.50888 -11.43563 -10.95766 -10.92524 -10.46988 -10.12904 -9.88957 -8.38852 -5.93754 1.43087 1.47155 1.50680 1.59552 1.68611 1.79834 2.11067 2.26017 2.34327 2.89541 2.94397 3.12852 3.72007 3.86799 3.93065 3.99847 4.05124 4.19063 4.23943 4.26192 4.34513 4.40120 4.41370 4.58072 4.62169 4.68986 4.70227 4.75164 4.78324 4.88356 4.93794 5.04492 5.19191 5.23533 5.27166 5.41886 5.46134 5.62786 5.73044 6.32205 6.53733 7.06871 7.20380 7.21781 7.48387 7.88807 8.68454 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002917 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.430142 B = 9595.530616 C =10915.219220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.487 3.513 4 O -0.539 6.539 5 C 0.152 3.848 6 N -0.442 5.442 7 C -0.354 4.354 8 H 0.119 0.881 9 C -0.003 4.003 10 N -0.897 5.897 11 Si 0.994 3.006 12 H -0.261 1.261 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.457 3.543 16 O -0.629 6.629 17 C -0.109 4.109 18 C -0.094 4.094 19 C 0.127 3.873 20 N -0.715 5.715 21 C 0.532 3.468 22 O -0.591 6.591 23 C -0.200 4.200 24 C -0.144 4.144 25 C -0.151 4.151 26 H 0.135 0.865 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.272 0.728 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.154 0.846 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 5.822 11.459 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.294 6.294 3 C 0.330 3.670 4 O -0.427 6.427 5 C 0.026 3.974 6 N -0.161 5.161 7 C -0.481 4.481 8 H 0.136 0.864 9 C -0.205 4.205 10 N -0.536 5.536 11 Si 0.818 3.182 12 H -0.186 1.186 13 H -0.214 1.214 14 H -0.195 1.195 15 C 0.248 3.752 16 O -0.518 6.518 17 C -0.150 4.150 18 C -0.133 4.133 19 C 0.003 3.997 20 N -0.366 5.366 21 C 0.320 3.680 22 O -0.472 6.472 23 C -0.221 4.221 24 C -0.181 4.181 25 C -0.188 4.188 26 H 0.153 0.847 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.171 0.829 40 H 0.102 0.898 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.672 6.213 11.136 13.029 hybrid contribution -0.476 -0.320 -1.076 1.219 sum 2.195 5.894 10.060 11.864 Atomic orbital electron populations 1.23296 0.76216 1.04891 1.01164 1.86425 1.24109 1.33820 1.85013 1.24126 0.92685 0.80744 0.69459 1.90475 1.67398 1.37740 1.47112 1.20540 0.86999 0.86086 1.03753 1.43679 1.57167 1.08404 1.06803 1.20047 1.35159 1.10450 0.82458 0.86357 1.26081 0.95010 0.96921 1.02517 1.69942 1.23955 1.31135 1.28562 0.84971 0.78687 0.78363 0.76212 1.18552 1.21405 1.19489 1.20957 0.81361 0.89871 0.82978 1.90492 1.56926 1.71609 1.32740 1.21243 1.03706 0.91636 0.98375 1.21306 1.02410 0.93582 0.95975 1.21239 1.01608 0.93581 0.83269 1.45903 1.68385 1.12297 1.09998 1.20368 0.75313 0.81398 0.90884 1.90671 1.50408 1.58259 1.47877 1.22293 1.10225 0.95551 0.94052 1.23045 0.91996 0.98958 1.04131 1.23019 0.98232 0.93440 1.04143 0.84729 0.93075 0.93699 0.86134 0.89121 0.91845 0.89816 0.87965 0.90507 0.91993 0.91355 0.92398 0.74739 0.82879 0.89759 0.84863 0.85249 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 10.56 113.37 1.20 2.48 16 2 O -0.38 -16.17 10.57 -51.46 -0.54 -16.71 16 3 C 0.49 24.40 6.13 71.24 0.44 24.84 16 4 O -0.54 -30.53 15.79 21.98 0.35 -30.18 16 5 C 0.15 7.32 5.14 85.63 0.44 7.76 16 6 N -0.44 -21.88 2.18 -639.61 -1.39 -23.27 16 7 C -0.35 -17.25 9.15 84.04 0.77 -16.48 16 8 H 0.12 5.27 6.55 -2.91 -0.02 5.25 16 9 C 0.00 -0.17 4.90 84.93 0.42 0.25 16 10 N -0.90 -46.24 9.24 21.66 0.20 -46.04 16 11 Si 0.99 38.46 29.60 68.60 2.03 40.49 16 12 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 13 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 15 C 0.46 21.47 7.42 87.66 0.65 22.12 16 16 O -0.63 -31.96 15.66 -3.05 -0.05 -32.01 16 17 C -0.11 -4.02 4.14 29.85 0.12 -3.90 16 18 C -0.09 -2.87 4.62 30.59 0.14 -2.73 16 19 C 0.13 3.45 5.67 86.38 0.49 3.94 16 20 N -0.71 -16.49 5.56 -463.05 -2.57 -19.06 16 21 C 0.53 13.56 7.61 87.66 0.67 14.22 16 22 O -0.59 -20.37 16.26 -3.01 -0.05 -20.42 16 23 C -0.20 -3.32 6.19 -11.53 -0.07 -3.39 16 24 C -0.14 -2.01 10.23 30.60 0.31 -1.70 16 25 C -0.15 -2.33 10.04 30.60 0.31 -2.02 16 26 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 28 H 0.04 1.61 8.13 -2.38 -0.02 1.59 16 29 H 0.12 5.78 6.34 -2.39 -0.02 5.76 16 30 H 0.09 4.08 7.61 -2.39 -0.02 4.06 16 31 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 32 H 0.08 3.18 8.10 -2.39 -0.02 3.16 16 33 H 0.10 3.36 7.70 -2.39 -0.02 3.35 16 34 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 35 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.42 7.29 8.47 -92.71 -0.79 6.50 16 39 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.72 7.67 -2.39 -0.02 1.70 16 Total: -1.00 -72.91 368.18 4.10 -68.81 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.24 Total: 33.01 kcal Atomic # 6 Polarization: 39.50 SS G_CDS: 5.88 Total: 45.38 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -3.77 Total: -88.37 kcal Atomic # 8 Polarization: -99.03 SS G_CDS: -0.29 Total: -99.32 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -72.91 4.10 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348783997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.089 kcal (2) G-P(sol) polarization free energy of solvation -72.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds