Wall clock time and date at job start Fri Apr 10 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99893 * 2 1 4 4 O 1.20816 * 119.99833 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99953 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.37091 * 120.00722 * 264.03531 * 6 5 3 8 8 H 1.07999 * 120.00738 * 142.82948 * 7 6 5 9 9 C 1.38955 * 119.99990 * 322.83639 * 7 6 5 10 10 N 1.31407 * 120.00310 * 156.93849 * 9 7 6 11 11 Si 1.86798 * 119.99545 * 336.93434 * 9 7 6 12 12 H 1.48508 * 109.47391 * 91.21983 * 11 9 7 13 13 H 1.48498 * 109.47466 * 211.21734 * 11 9 7 14 14 H 1.48498 * 109.47554 * 331.21966 * 11 9 7 15 15 C 1.34785 * 119.99821 * 84.03706 * 6 5 3 16 16 O 1.21288 * 119.99778 * 4.23769 * 15 6 5 17 17 C 1.50698 * 120.00057 * 184.24842 * 15 6 5 18 18 H 1.09010 * 109.52093 * 324.93728 * 17 15 6 19 19 C 1.53043 * 109.49618 * 204.86534 * 17 15 6 20 20 C 1.53041 * 109.52693 * 178.68836 * 19 17 15 21 21 C 1.53156 * 109.33024 * 61.36977 * 20 19 17 22 22 N 1.46928 * 108.76667 * 305.35918 * 21 20 19 23 23 C 1.34785 * 120.62953 * 233.62925 * 22 21 20 24 24 C 1.50700 * 119.99651 * 359.97438 * 23 22 21 25 25 O 1.21272 * 120.00293 * 179.97438 * 23 22 21 26 26 C 1.46927 * 118.74395 * 53.60717 * 22 21 20 27 27 H 1.09002 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47355 * 300.00129 * 1 2 3 29 29 H 1.09005 * 109.46831 * 60.00002 * 1 2 3 30 30 H 1.09007 * 109.46939 * 60.00503 * 5 3 2 31 31 H 1.09004 * 109.47607 * 300.00694 * 5 3 2 32 32 H 0.96998 * 120.00025 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.45712 * 298.69836 * 19 17 15 34 34 H 1.09000 * 109.45883 * 58.67132 * 19 17 15 35 35 H 1.09002 * 109.49769 * 181.31064 * 20 19 17 36 36 H 1.09003 * 109.49579 * 301.40247 * 20 19 17 37 37 H 1.08998 * 109.59459 * 185.57409 * 21 20 19 38 38 H 1.08998 * 109.70794 * 65.20912 * 21 20 19 39 39 H 1.08999 * 109.47632 * 60.00188 * 24 23 22 40 40 H 1.09003 * 109.47091 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46904 * 299.99796 * 24 23 22 42 42 H 1.08997 * 109.58425 * 186.60471 * 26 22 21 43 43 H 1.08995 * 109.70265 * 66.24604 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2949 3.3015 -1.1812 8 1 4.0250 4.3358 -1.3352 9 6 4.9594 2.6008 -2.1803 10 7 4.8693 2.9950 -3.4306 11 14 5.9810 1.0984 -1.7460 12 1 5.1346 -0.1186 -1.8356 13 1 7.1177 0.9816 -2.6943 14 1 6.5028 1.2375 -0.3627 15 6 4.0560 3.3611 1.1604 16 8 3.8538 2.7916 2.2120 17 6 4.3900 4.8306 1.1514 18 1 5.0991 5.0380 0.3499 19 6 5.0093 5.2219 2.4951 20 6 5.3788 6.7069 2.4750 21 6 4.1120 7.5417 2.2654 22 7 3.4325 7.0727 1.0501 23 6 3.1100 7.9364 0.0668 24 6 3.4457 9.3987 0.2084 25 8 2.5496 7.5368 -0.9317 26 6 3.1116 5.6442 0.9265 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.9564 0.7807 -0.8893 31 1 3.9558 0.7809 0.8908 32 1 5.3330 2.5057 -4.1280 33 1 4.2906 5.0373 3.2936 34 1 5.9058 4.6268 2.6688 35 1 5.8410 6.9796 3.4238 36 1 6.0785 6.8966 1.6611 37 1 4.3809 8.5918 2.1515 38 1 3.4490 7.4252 3.1227 39 1 4.5239 9.5150 0.3179 40 1 3.1110 9.9359 -0.6790 41 1 2.9454 9.8027 1.0886 42 1 2.7207 5.4424 -0.0707 43 1 2.3672 5.3688 1.6735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348784716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:44 Heat of formation + Delta-G solvation = -140.392903 kcal Electronic energy + Delta-G solvation = -27828.359270 eV Core-core repulsion = 23874.551262 eV Total energy + Delta-G solvation = -3953.808008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25065 -39.78084 -38.68628 -36.78760 -35.85860 -34.89565 -32.73228 -32.06262 -31.34443 -29.55638 -28.65712 -26.59678 -25.15950 -24.77138 -23.29263 -21.42702 -20.50154 -19.01182 -18.69190 -17.49038 -17.21361 -16.74473 -16.47433 -15.83086 -15.73854 -15.42640 -15.28396 -15.06441 -14.42116 -14.01352 -13.74204 -13.57040 -13.22580 -13.03595 -12.98516 -12.78300 -12.65949 -12.51576 -12.33866 -11.96038 -11.94154 -11.80501 -11.59090 -11.19605 -10.98042 -10.77038 -10.63600 -10.46627 -10.33979 -10.14711 -10.07001 -9.91910 -9.56410 -9.31324 -8.73980 -8.34022 -8.00285 -6.55240 -4.16009 2.85143 2.87558 2.93978 2.98929 3.16591 3.19432 3.27046 3.70364 4.00613 4.22741 4.74328 4.82841 4.94383 5.06944 5.19616 5.27225 5.36812 5.40076 5.44348 5.46017 5.48161 5.54423 5.60407 5.70885 5.78457 5.79702 5.86060 5.88930 5.99346 6.04252 6.17126 6.29553 6.35776 6.61549 6.69918 6.81409 6.85233 7.12481 7.68702 7.94750 8.19521 8.39166 8.47324 8.82444 9.18465 9.48945 10.54633 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.005389 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.999949 B = 5194.871786 C = 5679.119290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.105 3.895 6 N -0.446 5.446 7 C -0.347 4.347 8 H 0.112 0.888 9 C 0.067 3.933 10 N -0.844 5.844 11 Si 0.859 3.141 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.502 3.498 16 O -0.590 6.590 17 C -0.103 4.103 18 H 0.106 0.894 19 C -0.101 4.101 20 C -0.134 4.134 21 C 0.107 3.893 22 N -0.611 5.611 23 C 0.506 3.494 24 C -0.171 4.171 25 O -0.536 6.536 26 C 0.129 3.871 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.277 0.723 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 4.892 9.445 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.373 6.373 5 C -0.021 4.021 6 N -0.166 5.166 7 C -0.473 4.473 8 H 0.129 0.871 9 C -0.141 4.141 10 N -0.477 5.477 11 Si 0.685 3.315 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.180 1.180 15 C 0.291 3.709 16 O -0.474 6.474 17 C -0.125 4.125 18 H 0.124 0.876 19 C -0.139 4.139 20 C -0.172 4.172 21 C -0.016 4.016 22 N -0.346 5.346 23 C 0.295 3.705 24 C -0.230 4.230 25 O -0.412 6.412 26 C 0.007 3.993 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.610 4.708 9.180 10.335 hybrid contribution 0.355 -0.829 -0.119 0.909 sum -0.255 3.880 9.061 9.860 Atomic orbital electron populations 1.23135 0.77531 1.02811 1.02278 1.86519 1.22681 1.34508 1.84948 1.24724 0.92816 0.81224 0.72257 1.90617 1.66575 1.36231 1.43924 1.21430 0.86967 0.88505 1.05173 1.43427 1.57734 1.08200 1.07264 1.19159 1.38061 0.99627 0.90497 0.87072 1.25368 0.96253 0.97890 0.94616 1.69807 1.38265 1.40361 0.99287 0.87251 0.81280 0.82770 0.80187 1.19545 1.20679 1.17990 1.20187 0.78933 0.88952 0.82783 1.90540 1.54747 1.70754 1.31335 1.21369 0.99192 0.92240 0.99676 0.87613 1.21362 1.01183 0.94563 0.96797 1.21934 0.97159 0.95907 1.02242 1.21748 0.94061 0.98505 0.87297 1.48154 1.59225 1.08504 1.18683 1.20764 0.78762 0.88583 0.82425 1.21922 1.03517 0.92950 1.04643 1.90775 1.41753 1.79468 1.29226 1.21402 0.95361 0.77980 1.04600 0.88741 0.92350 0.92163 0.87066 0.87285 0.91248 0.91135 0.91501 0.90739 0.91271 0.89875 0.91430 0.89552 0.89245 0.89788 0.87624 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.01 10.57 -39.27 -0.41 -7.43 16 3 C 0.45 10.06 7.98 36.01 0.29 10.35 16 4 O -0.49 -12.18 16.04 -18.74 -0.30 -12.48 16 5 C 0.10 2.35 4.59 -5.20 -0.02 2.33 16 6 N -0.45 -10.82 1.73 -116.10 -0.20 -11.03 16 7 C -0.35 -9.10 8.70 -14.93 -0.13 -9.23 16 8 H 0.11 3.17 6.27 -52.49 -0.33 2.84 16 9 C 0.07 1.76 5.25 -17.47 -0.09 1.67 16 10 N -0.84 -23.30 13.96 55.50 0.77 -22.52 16 11 Si 0.86 19.23 25.25 -169.99 -4.29 14.94 16 12 H -0.27 -5.69 6.48 56.52 0.37 -5.32 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 15 C 0.50 11.57 6.53 -10.98 -0.07 11.50 16 16 O -0.59 -14.30 15.78 5.55 0.09 -14.21 16 17 C -0.10 -2.01 1.86 -91.65 -0.17 -2.18 16 18 H 0.11 2.20 6.92 -51.92 -0.36 1.84 16 19 C -0.10 -1.58 4.67 -26.69 -0.12 -1.71 16 20 C -0.13 -1.56 6.08 -26.63 -0.16 -1.72 16 21 C 0.11 1.20 6.34 -3.73 -0.02 1.17 16 22 N -0.61 -9.64 2.97 -172.80 -0.51 -10.15 16 23 C 0.51 8.42 7.81 -10.98 -0.09 8.33 16 24 C -0.17 -1.81 8.67 36.01 0.31 -1.50 16 25 O -0.54 -11.86 16.50 5.56 0.09 -11.76 16 26 C 0.13 2.52 5.62 -3.71 -0.02 2.50 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.11 2.48 3.48 -51.93 -0.18 2.30 16 31 H 0.11 2.26 7.55 -51.93 -0.39 1.87 16 32 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.07 1.14 7.92 -51.93 -0.41 0.72 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.67 5.93 -51.93 -0.31 0.37 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.74 7.69 -51.93 -0.40 0.34 16 40 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.08 0.68 7.94 -51.93 -0.41 0.26 16 42 H 0.11 2.49 6.08 -51.93 -0.32 2.17 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -34.01 349.47 -4.82 -38.83 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.08 Total: 7.44 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 0.76 Total: 23.11 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.06 Total: -43.70 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.54 Total: -45.89 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.29 Total: 14.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.01 -4.82 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348784716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.560 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds