Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99893 * 2 1 4 4 O 1.20816 * 119.99833 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99953 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.37091 * 120.00722 * 264.03531 * 6 5 3 8 8 H 1.07999 * 120.00738 * 142.82948 * 7 6 5 9 9 C 1.38955 * 119.99990 * 322.83639 * 7 6 5 10 10 N 1.31407 * 120.00310 * 156.93849 * 9 7 6 11 11 Si 1.86798 * 119.99545 * 336.93434 * 9 7 6 12 12 H 1.48508 * 109.47391 * 91.21983 * 11 9 7 13 13 H 1.48498 * 109.47466 * 211.21734 * 11 9 7 14 14 H 1.48498 * 109.47554 * 331.21966 * 11 9 7 15 15 C 1.34785 * 119.99821 * 84.03706 * 6 5 3 16 16 O 1.21288 * 119.99778 * 4.23769 * 15 6 5 17 17 C 1.50698 * 120.00057 * 184.24842 * 15 6 5 18 18 H 1.09010 * 109.52093 * 324.93728 * 17 15 6 19 19 C 1.53043 * 109.49618 * 204.86534 * 17 15 6 20 20 C 1.53041 * 109.52693 * 178.68836 * 19 17 15 21 21 C 1.53156 * 109.33024 * 61.36977 * 20 19 17 22 22 N 1.46928 * 108.76667 * 305.35918 * 21 20 19 23 23 C 1.34785 * 120.62953 * 233.62925 * 22 21 20 24 24 C 1.50700 * 119.99651 * 359.97438 * 23 22 21 25 25 O 1.21272 * 120.00293 * 179.97438 * 23 22 21 26 26 C 1.46927 * 118.74395 * 53.60717 * 22 21 20 27 27 H 1.09002 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47355 * 300.00129 * 1 2 3 29 29 H 1.09005 * 109.46831 * 60.00002 * 1 2 3 30 30 H 1.09007 * 109.46939 * 60.00503 * 5 3 2 31 31 H 1.09004 * 109.47607 * 300.00694 * 5 3 2 32 32 H 0.96998 * 120.00025 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.45712 * 298.69836 * 19 17 15 34 34 H 1.09000 * 109.45883 * 58.67132 * 19 17 15 35 35 H 1.09002 * 109.49769 * 181.31064 * 20 19 17 36 36 H 1.09003 * 109.49579 * 301.40247 * 20 19 17 37 37 H 1.08998 * 109.59459 * 185.57409 * 21 20 19 38 38 H 1.08998 * 109.70794 * 65.20912 * 21 20 19 39 39 H 1.08999 * 109.47632 * 60.00188 * 24 23 22 40 40 H 1.09003 * 109.47091 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46904 * 299.99796 * 24 23 22 42 42 H 1.08997 * 109.58425 * 186.60471 * 26 22 21 43 43 H 1.08995 * 109.70265 * 66.24604 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2949 3.3015 -1.1812 8 1 4.0250 4.3358 -1.3352 9 6 4.9594 2.6008 -2.1803 10 7 4.8693 2.9950 -3.4306 11 14 5.9810 1.0984 -1.7460 12 1 5.1346 -0.1186 -1.8356 13 1 7.1177 0.9816 -2.6943 14 1 6.5028 1.2375 -0.3627 15 6 4.0560 3.3611 1.1604 16 8 3.8538 2.7916 2.2120 17 6 4.3900 4.8306 1.1514 18 1 5.0991 5.0380 0.3499 19 6 5.0093 5.2219 2.4951 20 6 5.3788 6.7069 2.4750 21 6 4.1120 7.5417 2.2654 22 7 3.4325 7.0727 1.0501 23 6 3.1100 7.9364 0.0668 24 6 3.4457 9.3987 0.2084 25 8 2.5496 7.5368 -0.9317 26 6 3.1116 5.6442 0.9265 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.9564 0.7807 -0.8893 31 1 3.9558 0.7809 0.8908 32 1 5.3330 2.5057 -4.1280 33 1 4.2906 5.0373 3.2936 34 1 5.9058 4.6268 2.6688 35 1 5.8410 6.9796 3.4238 36 1 6.0785 6.8966 1.6611 37 1 4.3809 8.5918 2.1515 38 1 3.4490 7.4252 3.1227 39 1 4.5239 9.5150 0.3179 40 1 3.1110 9.9359 -0.6790 41 1 2.9454 9.8027 1.0886 42 1 2.7207 5.4424 -0.0707 43 1 2.3672 5.3688 1.6735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348784716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = -164.630537 kcal Electronic energy + Delta-G solvation = -27829.410293 eV Core-core repulsion = 23874.551262 eV Total energy + Delta-G solvation = -3954.859031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92421 -41.27849 -40.34853 -38.21886 -37.54847 -36.80252 -34.15265 -34.06123 -32.60578 -30.85227 -30.06488 -28.02286 -27.03567 -26.11403 -24.71899 -22.88080 -22.01531 -20.88262 -19.96657 -19.24206 -18.94850 -18.38374 -17.93424 -17.48874 -17.26004 -17.10021 -16.87723 -16.43806 -15.91110 -15.66335 -15.24170 -14.92367 -14.79914 -14.62020 -14.42235 -14.21992 -14.13187 -14.05723 -13.54752 -13.48041 -13.18568 -13.03859 -13.00925 -12.92827 -12.45085 -12.34039 -12.02607 -11.88718 -11.87186 -11.82896 -11.75831 -11.55120 -11.21905 -10.91268 -10.55598 -9.97215 -9.69360 -8.57905 -6.23968 1.07809 1.14011 1.24934 1.35773 1.43969 1.64013 1.86021 2.05953 2.11534 2.49665 2.88337 3.62931 3.75776 3.85753 3.87197 3.93327 3.99971 4.09472 4.12675 4.21572 4.25210 4.26657 4.35490 4.49661 4.59243 4.59923 4.65920 4.71942 4.78702 4.81821 4.96839 5.05882 5.12705 5.16366 5.22152 5.25622 5.45620 5.47719 5.97803 6.08636 6.47575 6.66134 6.82128 7.19465 7.20580 7.55411 8.56582 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.005389 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.999949 B = 5194.871786 C = 5679.119290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.450 3.550 4 O -0.526 6.526 5 C 0.096 3.904 6 N -0.457 5.457 7 C -0.348 4.348 8 H 0.069 0.931 9 C 0.025 3.975 10 N -0.890 5.890 11 Si 0.921 3.079 12 H -0.244 1.244 13 H -0.274 1.274 14 H -0.251 1.251 15 C 0.495 3.505 16 O -0.602 6.602 17 C -0.097 4.097 18 H 0.085 0.915 19 C -0.096 4.096 20 C -0.126 4.126 21 C 0.100 3.900 22 N -0.609 5.609 23 C 0.492 3.508 24 C -0.157 4.157 25 O -0.609 6.609 26 C 0.141 3.859 27 H 0.143 0.857 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.283 0.717 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.051 0.949 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.262 5.083 11.963 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.414 6.414 5 C -0.029 4.029 6 N -0.177 5.177 7 C -0.475 4.475 8 H 0.087 0.913 9 C -0.180 4.180 10 N -0.525 5.525 11 Si 0.743 3.257 12 H -0.169 1.169 13 H -0.199 1.199 14 H -0.175 1.175 15 C 0.286 3.714 16 O -0.486 6.486 17 C -0.119 4.119 18 H 0.103 0.897 19 C -0.135 4.135 20 C -0.164 4.164 21 C -0.021 4.021 22 N -0.342 5.342 23 C 0.284 3.716 24 C -0.216 4.216 25 O -0.490 6.490 26 C 0.017 3.983 27 H 0.161 0.839 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.140 0.860 42 H 0.069 0.931 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.680 4.893 11.749 12.745 hybrid contribution -0.179 -0.914 -0.872 1.276 sum 0.501 3.979 10.876 11.592 Atomic orbital electron populations 1.23564 0.74859 1.05946 1.02129 1.86486 1.25156 1.32243 1.84079 1.24672 0.92940 0.81659 0.71477 1.90610 1.67330 1.37631 1.45800 1.21577 0.87477 0.87645 1.06209 1.43476 1.58339 1.09063 1.06847 1.18794 1.38715 0.98418 0.91546 0.91336 1.26051 0.96735 1.01278 0.93976 1.69901 1.39541 1.42609 1.00471 0.86258 0.79765 0.79619 0.80067 1.16926 1.19920 1.17460 1.20836 0.78013 0.90287 0.82292 1.90506 1.55287 1.71395 1.31452 1.21365 0.98733 0.90128 1.01689 0.89669 1.21389 1.00562 0.97863 0.93639 1.21947 0.97466 0.92541 1.04448 1.22206 0.93682 1.00743 0.85464 1.48326 1.59031 1.06492 1.20369 1.22063 0.77265 0.91080 0.81199 1.21952 1.05788 0.87499 1.06314 1.90746 1.45105 1.81018 1.32170 1.20917 0.95125 0.81176 1.01094 0.83901 0.92242 0.92714 0.86731 0.85265 0.90670 0.91375 0.91600 0.86515 0.91471 0.85337 0.89747 0.86478 0.89501 0.86017 0.93084 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.98 16 2 O -0.36 -13.44 10.57 -51.47 -0.54 -13.98 16 3 C 0.45 20.45 7.98 71.24 0.57 21.02 16 4 O -0.53 -27.34 16.04 21.99 0.35 -26.99 16 5 C 0.10 4.32 4.59 85.63 0.39 4.71 16 6 N -0.46 -23.01 1.73 -639.60 -1.11 -24.11 16 7 C -0.35 -19.36 8.70 84.04 0.73 -18.63 16 8 H 0.07 4.33 6.27 -2.91 -0.02 4.31 16 9 C 0.02 1.34 5.25 84.93 0.45 1.79 16 10 N -0.89 -51.26 13.96 21.66 0.30 -50.96 16 11 Si 0.92 39.64 25.25 68.60 1.73 41.37 16 12 H -0.24 -9.51 6.48 99.48 0.64 -8.87 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 15 C 0.49 23.64 6.53 87.65 0.57 24.22 16 16 O -0.60 -29.47 15.78 -3.06 -0.05 -29.52 16 17 C -0.10 -3.97 1.86 -11.46 -0.02 -3.99 16 18 H 0.09 3.80 6.92 -2.38 -0.02 3.78 16 19 C -0.10 -2.92 4.67 30.62 0.14 -2.78 16 20 C -0.13 -2.52 6.08 30.66 0.19 -2.33 16 21 C 0.10 1.88 6.34 86.35 0.55 2.43 16 22 N -0.61 -19.23 2.97 -818.99 -2.43 -21.66 16 23 C 0.49 16.62 7.81 87.66 0.68 17.31 16 24 C -0.16 -2.88 8.67 71.24 0.62 -2.26 16 25 O -0.61 -29.07 16.50 -3.01 -0.05 -29.12 16 26 C 0.14 5.89 5.62 86.36 0.48 6.38 16 27 H 0.14 2.62 8.14 -2.39 -0.02 2.61 16 28 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.05 1.61 8.13 -2.38 -0.02 1.59 16 30 H 0.12 5.03 3.48 -2.38 -0.01 5.03 16 31 H 0.13 5.24 7.55 -2.39 -0.02 5.22 16 32 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.07 2.10 7.92 -2.39 -0.02 2.08 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.13 1.33 5.93 -2.39 -0.01 1.32 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.12 1.48 7.69 -2.39 -0.02 1.47 16 40 H 0.09 1.69 8.12 -2.39 -0.02 1.68 16 41 H 0.12 1.37 7.94 -2.38 -0.02 1.35 16 42 H 0.05 2.68 6.08 -2.39 -0.01 2.67 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -82.80 349.47 5.72 -77.08 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.97 Total: 28.05 kcal Atomic # 6 Polarization: 43.28 SS G_CDS: 6.55 Total: 49.83 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -3.24 Total: -96.74 kcal Atomic # 8 Polarization: -99.31 SS G_CDS: -0.29 Total: -99.60 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.73 Total: 41.37 kcal Total: -82.80 5.72 -77.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348784716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.547 kcal (2) G-P(sol) polarization free energy of solvation -82.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds