Wall clock time and date at job start Fri Apr 10 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99575 * 2 1 4 4 O 1.20826 * 120.00096 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00064 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47497 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00242 * 269.99852 * 6 5 3 8 8 H 1.07995 * 120.00298 * 203.03984 * 7 6 5 9 9 C 1.38955 * 119.99360 * 23.03757 * 7 6 5 10 10 N 1.31406 * 120.00330 * 351.27976 * 9 7 6 11 11 Si 1.86805 * 119.99708 * 171.28250 * 9 7 6 12 12 H 1.48494 * 109.47152 * 89.99621 * 11 9 7 13 13 H 1.48498 * 109.47138 * 210.00081 * 11 9 7 14 14 H 1.48499 * 109.46855 * 329.99692 * 11 9 7 15 15 C 1.34783 * 120.00394 * 89.99438 * 6 5 3 16 16 O 1.21294 * 119.99732 * 4.99434 * 15 6 5 17 17 C 1.50697 * 120.00358 * 184.99241 * 15 6 5 18 18 N 1.46502 * 109.46977 * 174.09071 * 17 15 6 19 19 C 1.47195 * 119.78840 * 269.99767 * 18 17 15 20 20 C 1.52984 * 108.66167 * 108.04398 * 19 18 17 21 21 C 1.51780 * 110.88031 * 86.46993 * 20 19 18 22 22 C 1.51798 * 113.81244 * 292.99464 * 21 20 19 23 23 C 1.53064 * 110.73892 * 66.80427 * 22 21 20 24 24 C 1.33371 * 119.78446 * 90.00537 * 18 17 15 25 25 O 1.21280 * 119.88626 * 0.55192 * 24 18 17 26 26 H 1.08999 * 109.47423 * 300.00130 * 1 2 3 27 27 H 1.09001 * 109.46736 * 60.00634 * 1 2 3 28 28 H 1.09002 * 109.46309 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47545 * 59.99334 * 5 3 2 30 30 H 1.09004 * 109.46699 * 299.99789 * 5 3 2 31 31 H 0.97003 * 120.00053 * 185.01988 * 10 9 7 32 32 H 1.09000 * 109.46843 * 54.09307 * 17 15 6 33 33 H 1.08993 * 109.46903 * 294.09686 * 17 15 6 34 34 H 1.09000 * 109.60277 * 348.29560 * 19 18 17 35 35 H 1.08993 * 109.60826 * 227.80265 * 19 18 17 36 36 H 1.09001 * 109.19504 * 326.11343 * 20 19 18 37 37 H 1.08996 * 109.16101 * 206.80756 * 20 19 18 38 38 H 1.09001 * 108.61805 * 171.88005 * 21 20 19 39 39 H 1.08993 * 108.61709 * 54.11588 * 21 20 19 40 40 H 1.09000 * 109.22338 * 306.48524 * 22 21 20 41 41 H 1.08994 * 109.22449 * 187.13393 * 22 21 20 42 42 H 1.09005 * 109.62652 * 155.38665 * 23 22 21 43 43 H 1.09004 * 109.79779 * 34.89177 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1755 3.3370 -1.1886 8 1 4.8144 4.2069 -1.2263 9 6 3.5501 2.8836 -2.3436 10 7 2.9140 1.7337 -2.3383 11 14 3.6135 3.9087 -3.9040 12 1 4.8084 3.5269 -4.6988 13 1 2.3874 3.6661 -4.7058 14 1 3.6953 5.3479 -3.5476 15 6 4.1730 3.3265 1.1659 16 8 4.0901 2.7226 2.2145 17 6 4.4901 4.7997 1.1679 18 7 4.5124 5.2926 2.5473 19 6 3.2769 5.8071 3.1600 20 6 2.7893 4.7973 4.2007 21 6 3.4505 5.0435 5.5446 22 6 4.9433 4.7680 5.5527 23 6 5.6848 5.7734 4.6683 24 6 5.6520 5.2723 3.2398 25 8 6.6665 4.8557 2.7219 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 3.9557 0.7810 -0.8907 30 1 3.9563 0.7807 0.8892 31 1 2.5400 1.3825 -3.1615 32 1 3.7280 5.3362 0.6026 33 1 5.4650 4.9621 0.7082 34 1 2.5146 5.9376 2.3919 35 1 3.4790 6.7625 3.6440 36 1 3.0297 3.7895 3.8623 37 1 1.7089 4.8902 4.3106 38 1 2.9749 4.4046 6.2887 39 1 3.2870 6.0832 5.8276 40 1 5.1243 3.7600 5.1795 41 1 5.3168 4.8444 6.5738 42 1 6.7188 5.8617 5.0018 43 1 5.1969 6.7465 4.7264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348803452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:48 Heat of formation + Delta-G solvation = -142.534559 kcal Electronic energy + Delta-G solvation = -28069.820107 eV Core-core repulsion = 24115.919229 eV Total energy + Delta-G solvation = -3953.900877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16202 -39.32870 -38.04942 -36.33044 -35.47554 -34.58854 -34.10295 -31.57375 -30.79790 -29.30605 -27.82823 -26.33256 -25.42655 -24.35490 -23.51573 -20.51035 -20.35965 -19.37699 -18.54020 -17.29078 -16.94793 -16.54786 -16.32643 -15.87506 -15.44367 -15.23918 -14.74507 -14.31668 -14.19903 -14.00518 -13.74709 -13.41530 -13.31097 -13.17593 -12.74128 -12.53776 -12.37703 -12.23340 -11.95573 -11.51053 -11.43101 -11.30421 -11.22111 -11.01429 -10.82920 -10.66414 -10.58779 -10.50632 -10.47194 -10.41410 -9.83534 -9.54564 -9.26532 -9.02391 -8.96301 -8.04411 -7.96556 -6.47156 -4.10371 3.05107 3.06654 3.16626 3.19291 3.38755 3.54413 3.73309 3.99064 4.08355 4.71488 4.78132 4.89494 4.96490 4.98708 5.02109 5.42899 5.48148 5.58666 5.61814 5.68605 5.75625 5.79964 5.82300 5.93650 6.00519 6.04883 6.10046 6.14413 6.20544 6.22820 6.28649 6.35840 6.53144 6.72682 6.82350 6.93114 7.28876 7.47890 7.62847 7.85976 8.22300 8.64205 8.95243 9.12223 9.34281 9.74196 10.54041 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.005299 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.230009 B = 5282.513089 C = 6472.504913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.492 3.508 4 O -0.516 6.516 5 C 0.155 3.845 6 N -0.433 5.433 7 C -0.328 4.328 8 H 0.102 0.898 9 C 0.044 3.956 10 N -0.884 5.884 11 Si 0.933 3.067 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.462 3.538 16 O -0.591 6.591 17 C 0.112 3.888 18 N -0.586 5.586 19 C 0.117 3.883 20 C -0.153 4.153 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.134 4.134 24 C 0.519 3.481 25 O -0.553 6.553 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.273 0.727 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 4.926 8.405 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.334 3.666 4 O -0.402 6.402 5 C 0.029 3.971 6 N -0.153 5.153 7 C -0.455 4.455 8 H 0.120 0.880 9 C -0.160 4.160 10 N -0.524 5.524 11 Si 0.759 3.241 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.251 3.749 16 O -0.476 6.476 17 C -0.014 4.014 18 N -0.317 5.317 19 C -0.006 4.006 20 C -0.191 4.191 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.174 4.174 24 C 0.307 3.693 25 O -0.431 6.431 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.138 4.641 8.501 9.919 hybrid contribution -0.551 0.427 -1.125 1.324 sum -2.689 5.067 7.376 9.344 Atomic orbital electron populations 1.22911 0.78993 1.01747 1.01411 1.86473 1.21401 1.35566 1.85604 1.23989 0.92343 0.80366 0.69857 1.90480 1.66743 1.36469 1.46538 1.20617 0.86803 0.85680 1.03970 1.43297 1.58334 1.08387 1.05249 1.19662 1.27511 1.13087 0.85252 0.88037 1.25291 0.94186 0.96304 1.00198 1.69602 1.36307 1.17898 1.28579 0.85829 0.77754 0.80009 0.80491 1.20244 1.20800 1.19308 1.20558 0.81499 0.89303 0.83571 1.90479 1.57354 1.68243 1.31495 1.21214 1.04374 0.93631 0.82168 1.47468 1.09231 1.61212 1.13813 1.21763 0.86233 0.96074 0.96554 1.21938 0.99628 1.02999 0.94584 1.21105 0.95149 1.01131 0.97708 1.21204 0.94994 0.99899 0.98972 1.21951 1.02974 1.00022 0.92461 1.20363 0.82847 0.78091 0.87986 1.90685 1.33722 1.47803 1.70886 0.93294 0.92812 0.89657 0.84500 0.90649 0.91564 0.88081 0.88065 0.89837 0.91099 0.88215 0.91501 0.92168 0.92602 0.90892 0.91327 0.89056 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.37 -8.12 10.57 -39.25 -0.41 -8.54 16 3 C 0.49 12.15 5.91 36.01 0.21 12.36 16 4 O -0.52 -13.92 15.94 -18.75 -0.30 -14.22 16 5 C 0.15 3.78 5.29 -5.19 -0.03 3.76 16 6 N -0.43 -10.85 2.11 -116.10 -0.25 -11.10 16 7 C -0.33 -8.11 8.99 -14.93 -0.13 -8.25 16 8 H 0.10 2.35 6.74 -52.49 -0.35 2.00 16 9 C 0.04 1.07 5.41 -17.47 -0.09 0.97 16 10 N -0.88 -22.39 8.21 55.50 0.46 -21.94 16 11 Si 0.93 19.39 29.57 -169.99 -5.03 14.37 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 15 C 0.46 11.17 7.68 -10.98 -0.08 11.09 16 16 O -0.59 -15.16 13.96 5.54 0.08 -15.08 16 17 C 0.11 2.27 4.42 -5.19 -0.02 2.25 16 18 N -0.59 -10.42 1.98 -174.61 -0.34 -10.76 16 19 C 0.12 1.64 5.91 -3.67 -0.02 1.62 16 20 C -0.15 -2.20 5.74 -27.36 -0.16 -2.35 16 21 C -0.11 -1.32 5.27 -27.96 -0.15 -1.47 16 22 C -0.11 -1.43 5.67 -27.31 -0.15 -1.58 16 23 C -0.13 -1.77 5.56 -27.50 -0.15 -1.92 16 24 C 0.52 9.51 6.73 -11.26 -0.08 9.43 16 25 O -0.55 -12.46 16.60 5.56 0.09 -12.36 16 26 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.14 3.39 6.28 -51.93 -0.33 3.06 16 30 H 0.08 1.79 7.36 -51.93 -0.38 1.41 16 31 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 32 H 0.10 1.92 7.72 -51.93 -0.40 1.52 16 33 H 0.10 2.11 7.01 -51.93 -0.36 1.75 16 34 H 0.08 1.15 7.77 -51.93 -0.40 0.75 16 35 H 0.07 0.77 6.71 -51.93 -0.35 0.43 16 36 H 0.10 1.89 5.95 -51.93 -0.31 1.59 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 40 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 43 H 0.08 0.89 6.79 -51.93 -0.35 0.54 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -32.60 346.73 -6.42 -39.03 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.15 Total: 7.63 kcal Atomic # 6 Polarization: 27.54 SS G_CDS: 0.21 Total: 27.74 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.13 Total: -43.80 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.54 Total: -50.20 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.60 -6.42 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348803452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.506 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds