Wall clock time and date at job start Fri Apr 10 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99575 * 2 1 4 4 O 1.20826 * 120.00096 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00064 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47497 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00242 * 269.99852 * 6 5 3 8 8 H 1.07995 * 120.00298 * 203.03984 * 7 6 5 9 9 C 1.38955 * 119.99360 * 23.03757 * 7 6 5 10 10 N 1.31406 * 120.00330 * 351.27976 * 9 7 6 11 11 Si 1.86805 * 119.99708 * 171.28250 * 9 7 6 12 12 H 1.48494 * 109.47152 * 89.99621 * 11 9 7 13 13 H 1.48498 * 109.47138 * 210.00081 * 11 9 7 14 14 H 1.48499 * 109.46855 * 329.99692 * 11 9 7 15 15 C 1.34783 * 120.00394 * 89.99438 * 6 5 3 16 16 O 1.21294 * 119.99732 * 4.99434 * 15 6 5 17 17 C 1.50697 * 120.00358 * 184.99241 * 15 6 5 18 18 N 1.46502 * 109.46977 * 174.09071 * 17 15 6 19 19 C 1.47195 * 119.78840 * 269.99767 * 18 17 15 20 20 C 1.52984 * 108.66167 * 108.04398 * 19 18 17 21 21 C 1.51780 * 110.88031 * 86.46993 * 20 19 18 22 22 C 1.51798 * 113.81244 * 292.99464 * 21 20 19 23 23 C 1.53064 * 110.73892 * 66.80427 * 22 21 20 24 24 C 1.33371 * 119.78446 * 90.00537 * 18 17 15 25 25 O 1.21280 * 119.88626 * 0.55192 * 24 18 17 26 26 H 1.08999 * 109.47423 * 300.00130 * 1 2 3 27 27 H 1.09001 * 109.46736 * 60.00634 * 1 2 3 28 28 H 1.09002 * 109.46309 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47545 * 59.99334 * 5 3 2 30 30 H 1.09004 * 109.46699 * 299.99789 * 5 3 2 31 31 H 0.97003 * 120.00053 * 185.01988 * 10 9 7 32 32 H 1.09000 * 109.46843 * 54.09307 * 17 15 6 33 33 H 1.08993 * 109.46903 * 294.09686 * 17 15 6 34 34 H 1.09000 * 109.60277 * 348.29560 * 19 18 17 35 35 H 1.08993 * 109.60826 * 227.80265 * 19 18 17 36 36 H 1.09001 * 109.19504 * 326.11343 * 20 19 18 37 37 H 1.08996 * 109.16101 * 206.80756 * 20 19 18 38 38 H 1.09001 * 108.61805 * 171.88005 * 21 20 19 39 39 H 1.08993 * 108.61709 * 54.11588 * 21 20 19 40 40 H 1.09000 * 109.22338 * 306.48524 * 22 21 20 41 41 H 1.08994 * 109.22449 * 187.13393 * 22 21 20 42 42 H 1.09005 * 109.62652 * 155.38665 * 23 22 21 43 43 H 1.09004 * 109.79779 * 34.89177 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1755 3.3370 -1.1886 8 1 4.8144 4.2069 -1.2263 9 6 3.5501 2.8836 -2.3436 10 7 2.9140 1.7337 -2.3383 11 14 3.6135 3.9087 -3.9040 12 1 4.8084 3.5269 -4.6988 13 1 2.3874 3.6661 -4.7058 14 1 3.6953 5.3479 -3.5476 15 6 4.1730 3.3265 1.1659 16 8 4.0901 2.7226 2.2145 17 6 4.4901 4.7997 1.1679 18 7 4.5124 5.2926 2.5473 19 6 3.2769 5.8071 3.1600 20 6 2.7893 4.7973 4.2007 21 6 3.4505 5.0435 5.5446 22 6 4.9433 4.7680 5.5527 23 6 5.6848 5.7734 4.6683 24 6 5.6520 5.2723 3.2398 25 8 6.6665 4.8557 2.7219 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 3.9557 0.7810 -0.8907 30 1 3.9563 0.7807 0.8892 31 1 2.5400 1.3825 -3.1615 32 1 3.7280 5.3362 0.6026 33 1 5.4650 4.9621 0.7082 34 1 2.5146 5.9376 2.3919 35 1 3.4790 6.7625 3.6440 36 1 3.0297 3.7895 3.8623 37 1 1.7089 4.8902 4.3106 38 1 2.9749 4.4046 6.2887 39 1 3.2870 6.0832 5.8276 40 1 5.1243 3.7600 5.1795 41 1 5.3168 4.8444 6.5738 42 1 6.7188 5.8617 5.0018 43 1 5.1969 6.7465 4.7264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348803452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:48 Heat of formation + Delta-G solvation = -162.608871 kcal Electronic energy + Delta-G solvation = -28070.690594 eV Core-core repulsion = 24115.919229 eV Total energy + Delta-G solvation = -3954.771365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67303 -41.11897 -39.85492 -37.66158 -37.29269 -36.48806 -35.46348 -33.49269 -31.96978 -31.02389 -29.33585 -27.87691 -26.96004 -26.03177 -24.74770 -22.27286 -21.44284 -21.22979 -19.99618 -19.00053 -18.53851 -18.21584 -18.10138 -17.33940 -17.26991 -16.98048 -16.26504 -15.95401 -15.80002 -15.58874 -15.10506 -14.84678 -14.51286 -14.40247 -14.33520 -14.15061 -14.11433 -13.56981 -13.30297 -13.11016 -13.01115 -12.92041 -12.83164 -12.68536 -12.43667 -12.30933 -12.12931 -11.71079 -11.60768 -11.58289 -11.46401 -11.43718 -10.94319 -10.70121 -10.69205 -9.90244 -9.60884 -8.35381 -6.04628 1.38583 1.45173 1.55381 1.62104 1.70922 1.83653 2.09354 2.20368 2.33367 2.97410 3.11345 3.55972 3.91217 3.95165 4.00486 4.16114 4.28029 4.32543 4.34529 4.38516 4.39393 4.48731 4.53468 4.56643 4.58268 4.61627 4.70838 4.87018 4.90885 4.93295 5.05215 5.13465 5.29330 5.32381 5.35239 5.48894 5.56457 5.65076 5.75039 6.31074 6.52199 7.03847 7.20254 7.24495 7.44864 7.84283 8.65631 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.005299 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.230009 B = 5282.513089 C = 6472.504913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.496 3.504 4 O -0.545 6.545 5 C 0.153 3.847 6 N -0.444 5.444 7 C -0.346 4.346 8 H 0.112 0.888 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.998 3.002 12 H -0.268 1.268 13 H -0.289 1.289 14 H -0.258 1.258 15 C 0.449 3.551 16 O -0.614 6.614 17 C 0.119 3.881 18 N -0.586 5.586 19 C 0.110 3.890 20 C -0.152 4.152 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.123 4.123 24 C 0.506 3.494 25 O -0.608 6.608 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.273 0.727 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 6.983 9.389 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.339 3.661 4 O -0.434 6.434 5 C 0.028 3.972 6 N -0.164 5.164 7 C -0.473 4.473 8 H 0.130 0.870 9 C -0.198 4.198 10 N -0.544 5.544 11 Si 0.821 3.179 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.182 1.182 15 C 0.239 3.761 16 O -0.500 6.500 17 C -0.007 4.007 18 N -0.316 5.316 19 C -0.011 4.011 20 C -0.190 4.190 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.162 4.162 24 C 0.296 3.704 25 O -0.490 6.490 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.045 0.955 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.070 6.691 9.510 12.027 hybrid contribution -0.344 -0.346 -1.404 1.486 sum -3.413 6.346 8.107 10.846 Atomic orbital electron populations 1.23285 0.76218 1.04806 1.01176 1.86433 1.24074 1.33891 1.84983 1.23888 0.92330 0.80705 0.69137 1.90444 1.67344 1.37513 1.48064 1.20574 0.87317 0.85992 1.03357 1.43534 1.58434 1.08567 1.05863 1.20010 1.28230 1.13616 0.85407 0.87044 1.26139 0.93624 0.97097 1.02962 1.69699 1.36668 1.18968 1.29102 0.84844 0.77477 0.78932 0.76639 1.19375 1.21443 1.18214 1.21286 0.80955 0.90873 0.83015 1.90463 1.58266 1.69159 1.32158 1.21036 1.04002 0.91240 0.84439 1.47670 1.10641 1.60448 1.12843 1.22106 0.84676 0.97693 0.96614 1.21887 1.00925 1.00013 0.96220 1.21096 0.93914 1.03682 0.95995 1.21214 0.96060 0.97152 1.00287 1.22010 1.04310 1.01611 0.88314 1.21450 0.81997 0.77150 0.89801 1.90649 1.35648 1.50295 1.72417 0.92970 0.93627 0.84969 0.85148 0.90991 0.91691 0.86819 0.89012 0.89926 0.86530 0.93569 0.90073 0.91486 0.88659 0.95454 0.88008 0.88222 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.50 16 2 O -0.38 -16.52 10.57 -51.38 -0.54 -17.06 16 3 C 0.50 25.11 5.91 71.24 0.42 25.54 16 4 O -0.54 -30.06 15.94 21.96 0.35 -29.71 16 5 C 0.15 7.81 5.29 85.63 0.45 8.26 16 6 N -0.44 -23.09 2.11 -639.60 -1.35 -24.44 16 7 C -0.35 -17.44 8.99 84.04 0.76 -16.68 16 8 H 0.11 5.24 6.74 -2.91 -0.02 5.22 16 9 C 0.00 0.12 5.41 84.93 0.46 0.58 16 10 N -0.90 -46.51 8.21 21.66 0.18 -46.33 16 11 Si 1.00 39.54 29.57 68.60 2.03 41.57 16 12 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 13 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 15 C 0.45 22.60 7.68 87.66 0.67 23.27 16 16 O -0.61 -33.13 13.96 -3.07 -0.04 -33.18 16 17 C 0.12 4.97 4.42 85.63 0.38 5.35 16 18 N -0.59 -20.66 1.98 -825.52 -1.63 -22.29 16 19 C 0.11 2.87 5.91 86.24 0.51 3.38 16 20 C -0.15 -4.15 5.74 30.19 0.17 -3.98 16 21 C -0.11 -2.20 5.27 29.80 0.16 -2.04 16 22 C -0.11 -2.52 5.67 30.22 0.17 -2.35 16 23 C -0.12 -2.91 5.56 30.10 0.17 -2.74 16 24 C 0.51 18.40 6.73 88.10 0.59 19.00 16 25 O -0.61 -28.24 16.60 -3.03 -0.05 -28.29 16 26 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 27 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 28 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.13 6.75 6.28 -2.39 -0.02 6.73 16 30 H 0.07 3.62 7.36 -2.39 -0.02 3.60 16 31 H 0.27 13.47 8.32 -92.71 -0.77 12.70 16 32 H 0.11 4.36 7.72 -2.39 -0.02 4.34 16 33 H 0.09 3.97 7.01 -2.39 -0.02 3.96 16 34 H 0.08 2.15 7.77 -2.39 -0.02 2.13 16 35 H 0.12 1.98 6.71 -2.39 -0.02 1.97 16 36 H 0.05 1.80 5.95 -2.39 -0.01 1.78 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.24 7.89 -2.39 -0.02 1.22 16 40 H 0.03 0.87 7.86 -2.39 -0.02 0.85 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.10 2.22 8.13 -2.38 -0.02 2.20 16 43 H 0.12 1.96 6.79 -2.38 -0.02 1.94 16 Total: -1.00 -75.29 346.73 6.07 -69.21 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 1.02 Total: 30.44 kcal Atomic # 6 Polarization: 53.96 SS G_CDS: 6.11 Total: 60.07 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -2.80 Total: -93.06 kcal Atomic # 8 Polarization: -107.95 SS G_CDS: -0.29 Total: -108.24 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -75.29 6.07 -69.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348803452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.394 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds