Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47148 * 2 1 4 4 O 1.42894 * 109.47378 * 120.00105 * 2 1 3 5 5 C 1.52995 * 109.47343 * 240.00258 * 2 1 3 6 6 H 1.09004 * 109.47007 * 303.58495 * 5 2 1 7 7 N 1.46500 * 109.47505 * 63.58003 * 5 2 1 8 8 C 1.34780 * 120.00234 * 275.00539 * 7 5 2 9 9 O 1.21280 * 119.99517 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00022 * 179.97438 * 8 7 5 11 11 C 1.52997 * 117.49660 * 248.61772 * 10 8 7 12 12 C 1.52987 * 60.00214 * 252.51424 * 11 10 8 13 13 C 1.50698 * 109.47479 * 183.58380 * 5 2 1 14 14 O 1.21286 * 119.99989 * 270.95327 * 13 5 2 15 15 N 1.34778 * 120.00063 * 90.95311 * 13 5 2 16 16 C 1.47580 * 134.48895 * 175.06483 * 15 13 5 17 17 C 1.53949 * 86.11503 * 155.36007 * 16 15 13 18 18 O 1.42903 * 113.74101 * 269.15162 * 17 16 15 19 19 C 1.50698 * 113.74391 * 137.95099 * 17 16 15 20 20 H 1.08005 * 119.99726 * 1.92411 * 19 17 16 21 21 C 1.37878 * 120.00006 * 182.19991 * 19 17 16 22 22 N 1.31513 * 119.99898 * 359.72775 * 21 19 17 23 23 Si 1.86806 * 119.99827 * 179.72717 * 21 19 17 24 24 H 1.48493 * 109.46987 * 89.99921 * 23 21 19 25 25 H 1.48497 * 109.46874 * 210.00098 * 23 21 19 26 26 H 1.48497 * 109.46932 * 329.99616 * 23 21 19 27 27 C 1.47809 * 134.45622 * 354.93235 * 15 13 5 28 28 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47430 * 300.00192 * 1 2 3 30 30 H 1.09003 * 109.46950 * 59.99931 * 1 2 3 31 31 H 0.96703 * 114.00282 * 53.96746 * 4 2 1 32 32 H 0.96995 * 119.99941 * 94.99715 * 7 5 2 33 33 H 1.09000 * 115.55259 * 34.33092 * 10 8 7 34 34 H 1.09007 * 117.50241 * 0.02562 * 11 10 8 35 35 H 1.09011 * 117.49994 * 145.02182 * 11 10 8 36 36 H 1.09010 * 117.49839 * 252.51564 * 12 11 10 37 37 H 1.08995 * 117.52519 * 107.48513 * 12 11 10 38 38 H 1.08997 * 113.77573 * 41.06123 * 16 15 13 39 39 H 1.09002 * 113.87428 * 269.66990 * 16 15 13 40 40 H 0.96699 * 113.99848 * 178.06919 * 18 17 16 41 41 H 0.97002 * 119.99728 * 180.02562 * 22 21 19 42 42 H 1.09005 * 113.76805 * 90.38140 * 27 15 13 43 43 H 1.08999 * 113.83911 * 318.91805 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 1 1.6251 -1.7286 -1.2820 7 7 1.6234 0.0174 -2.4439 8 6 0.4038 -0.1953 -2.9766 9 8 -0.3486 -0.9986 -2.4672 10 6 -0.0249 0.5648 -4.2051 11 6 -1.1403 1.5993 -4.0423 12 6 -1.4210 0.2786 -4.7616 13 6 3.5444 -0.7986 -1.2056 14 8 4.2116 0.0974 -1.6779 15 7 4.1483 -1.8634 -0.6419 16 6 5.5496 -2.3066 -0.5077 17 6 5.0736 -3.0897 0.7293 18 8 5.1694 -2.3519 1.9493 19 6 5.6588 -4.4746 0.8328 20 1 6.3680 -4.8177 0.0941 21 6 5.2844 -5.3056 1.8674 22 7 4.4207 -4.8877 2.7669 23 14 6.0040 -7.0250 1.9914 24 1 7.2465 -6.9842 2.8036 25 1 5.0189 -7.9283 2.6386 26 1 6.3184 -7.5293 0.6305 27 6 3.6726 -3.0548 0.0922 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6475 -1.5644 1.2807 32 1 2.2253 0.6597 -2.8514 33 1 0.7667 0.7861 -4.9211 34 1 -1.5639 1.7304 -3.0465 35 1 -1.0827 2.5017 -4.6511 36 1 -1.5480 0.3119 -5.8437 37 1 -2.0293 -0.4600 -4.2395 38 1 6.2453 -1.5001 -0.2761 39 1 5.8917 -2.9417 -1.3249 40 1 4.8439 -2.8296 2.7245 41 1 4.1576 -5.4722 3.4949 42 1 3.4602 -3.9103 -0.5492 43 1 2.8724 -2.8446 0.8018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356883120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = -104.898846 kcal Electronic energy + Delta-G solvation = -27347.737919 eV Core-core repulsion = 23395.469049 eV Total energy + Delta-G solvation = -3952.268871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64441 -39.45572 -37.87671 -36.92545 -36.23857 -34.37461 -33.91256 -32.20740 -30.74680 -29.22691 -27.33829 -25.35257 -25.24059 -24.05096 -22.69479 -21.76795 -20.36491 -20.11616 -18.53292 -17.76879 -17.27994 -16.91944 -16.70612 -15.95995 -15.52055 -15.41379 -15.07720 -14.82877 -14.61355 -14.45476 -14.12086 -13.47690 -13.30654 -12.93571 -12.77731 -12.47092 -12.42237 -12.14043 -11.95397 -11.83473 -11.75104 -11.55337 -11.20147 -11.07232 -10.97482 -10.89402 -10.77470 -10.51669 -10.35822 -10.25907 -9.93392 -9.70726 -9.36305 -8.94996 -8.75526 -8.42400 -7.87173 -6.39284 -4.49864 2.32392 2.70504 3.08204 3.15050 3.23235 3.25644 3.51576 3.65109 4.18340 4.37914 4.49819 4.60342 4.62557 4.73843 4.86202 4.89763 4.91913 5.08166 5.27602 5.30347 5.46167 5.53181 5.58859 5.65839 5.81759 5.85089 5.93459 6.02743 6.11463 6.16949 6.32343 6.35213 6.47802 6.55971 6.65142 7.09339 7.40373 7.62743 7.79938 7.82266 8.09330 8.37739 8.53101 8.58873 9.21550 9.46874 10.67065 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.003463 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.552600 B = 8082.631858 C = 8120.035343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 H 0.100 0.900 4 O -0.540 6.540 5 C 0.102 3.898 6 H 0.105 0.895 7 N -0.703 5.703 8 C 0.544 3.456 9 O -0.535 6.535 10 C -0.194 4.194 11 C -0.153 4.153 12 C -0.147 4.147 13 C 0.535 3.465 14 O -0.565 6.565 15 N -0.617 5.617 16 C 0.111 3.889 17 C 0.244 3.756 18 O -0.567 6.567 19 C -0.540 4.540 20 H 0.070 0.930 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.076 3.924 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.376 0.624 32 H 0.411 0.589 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.391 0.609 41 H 0.273 0.727 42 H 0.081 0.919 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 8.068 -9.980 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.041 3.959 3 H 0.118 0.882 4 O -0.345 6.345 5 C -0.007 4.007 6 H 0.123 0.877 7 N -0.358 5.358 8 C 0.330 3.670 9 O -0.412 6.412 10 C -0.215 4.215 11 C -0.190 4.190 12 C -0.184 4.184 13 C 0.323 3.677 14 O -0.446 6.446 15 N -0.349 5.349 16 C -0.011 4.011 17 C 0.202 3.798 18 O -0.378 6.378 19 C -0.578 4.578 20 H 0.089 0.911 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.196 1.196 27 C -0.046 4.046 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.225 0.775 32 H 0.248 0.752 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.246 0.754 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.121 9.038 -10.049 16.885 hybrid contribution 0.071 -1.597 0.066 1.600 sum -10.050 7.441 -9.983 16.001 Atomic orbital electron populations 1.22538 0.95023 1.03439 1.02090 1.22124 0.93666 0.96711 0.83358 0.88168 1.86784 1.71991 1.33087 1.42688 1.21588 0.93352 0.98665 0.87080 0.87692 1.45608 1.17208 1.44039 1.28918 1.19629 0.81093 0.82233 0.84007 1.90712 1.52767 1.35412 1.62308 1.22170 0.94824 1.05464 0.99056 1.22945 0.99579 0.93485 1.02993 1.22955 0.95532 0.99349 1.00563 1.19728 0.88561 0.81915 0.77499 1.90621 1.66182 1.38318 1.49510 1.50043 1.10940 1.20697 1.53197 1.23497 0.83037 0.96707 0.97810 1.19753 0.88591 0.88980 0.82482 1.86096 1.87085 1.46155 1.18455 1.21502 1.27034 0.97472 1.11761 0.91147 1.25054 0.93842 0.99217 0.94839 1.69408 1.32068 1.37777 1.14236 0.86358 0.78977 0.82789 0.78549 1.20287 1.20942 1.19633 1.24460 1.03002 0.83865 0.93309 0.91413 0.92128 0.91736 0.77508 0.75217 0.85724 0.88207 0.87744 0.87929 0.87305 0.91017 0.89550 0.75436 0.91694 0.90124 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 8.06 37.16 0.30 -2.01 16 2 C 0.10 1.57 3.36 -26.74 -0.09 1.48 16 3 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 4 O -0.54 -9.31 12.13 -35.23 -0.43 -9.73 16 5 C 0.10 1.63 2.26 -69.09 -0.16 1.48 16 6 H 0.11 1.74 7.32 -51.93 -0.38 1.36 16 7 N -0.70 -9.52 5.00 -54.93 -0.27 -9.79 16 8 C 0.54 7.00 6.12 -10.99 -0.07 6.93 16 9 O -0.53 -8.30 13.39 5.56 0.07 -8.22 16 10 C -0.19 -1.81 6.19 -91.78 -0.57 -2.38 16 11 C -0.15 -1.16 10.23 -26.74 -0.27 -1.44 16 12 C -0.15 -1.21 10.04 -26.74 -0.27 -1.48 16 13 C 0.54 10.50 6.78 -10.99 -0.07 10.42 16 14 O -0.57 -12.24 16.85 5.55 0.09 -12.15 16 15 N -0.62 -12.66 3.59 -178.11 -0.64 -13.30 16 16 C 0.11 2.39 8.23 -2.96 -0.02 2.36 16 17 C 0.24 5.69 1.40 -90.84 -0.13 5.56 16 18 O -0.57 -14.36 13.49 -35.23 -0.48 -14.83 16 19 C -0.54 -13.24 8.61 -34.44 -0.30 -13.54 16 20 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 21 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 22 N -0.90 -22.08 11.21 55.43 0.62 -21.46 16 23 Si 0.91 19.20 29.54 -169.99 -5.02 14.18 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 C 0.08 1.57 7.63 -2.84 -0.02 1.55 16 28 H 0.07 0.94 7.76 -51.93 -0.40 0.54 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.85 5.68 -51.93 -0.29 0.55 16 31 H 0.38 5.71 7.24 45.56 0.33 6.04 16 32 H 0.41 5.23 7.86 -40.82 -0.32 4.91 16 33 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.11 1.06 7.67 -51.93 -0.40 0.66 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 40 H 0.39 10.00 6.61 45.56 0.30 10.30 16 41 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 42 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 43 H 0.07 1.43 5.70 -51.93 -0.30 1.14 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -29.20 355.95 -7.25 -36.45 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -4.81 Total: 22.86 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.76 Total: 10.63 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.29 Total: -44.55 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.73 Total: -44.93 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.20 -7.25 -36.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356883120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.446 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds