Wall clock time and date at job start Fri Apr 10 2020 18:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47355 * 2 1 4 4 C 1.45646 * 117.70590 * 89.99383 * 3 2 1 5 5 C 1.52986 * 110.77142 * 158.10342 * 4 3 2 6 6 N 1.47274 * 108.18797 * 46.72707 * 5 4 3 7 7 C 1.34776 * 121.35450 * 118.52044 * 6 5 4 8 8 O 1.21582 * 120.00305 * 174.46940 * 7 6 5 9 9 N 1.34777 * 119.99986 * 354.46741 * 7 6 5 10 10 C 1.46499 * 120.00236 * 184.99965 * 9 7 6 11 11 C 1.50693 * 109.47290 * 180.02562 * 10 9 7 12 12 O 1.21298 * 120.00051 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.37096 * 120.00282 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00015 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99968 * 180.02562 * 14 13 11 17 17 N 1.31413 * 120.00142 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47195 * 60.00228 * 18 16 14 20 20 H 1.48500 * 109.46784 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47057 * 299.99749 * 18 16 14 22 22 C 1.47051 * 117.28994 * 298.49541 * 6 5 4 23 23 H 1.09003 * 109.56641 * 282.91175 * 22 6 5 24 24 C 1.53003 * 109.56279 * 162.67925 * 22 6 5 25 25 C 1.33379 * 117.70197 * 269.74025 * 3 2 1 26 26 O 1.21280 * 118.49013 * 4.29467 * 25 3 2 27 27 H 1.09001 * 109.47157 * 60.00511 * 1 2 3 28 28 H 1.08996 * 109.47093 * 300.00290 * 1 2 3 29 29 H 1.08996 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47157 * 119.99489 * 2 1 3 31 31 H 1.08994 * 109.47803 * 239.99530 * 2 1 3 32 32 H 1.09006 * 109.21798 * 278.43151 * 4 3 2 33 33 H 1.08995 * 109.21814 * 37.81343 * 4 3 2 34 34 H 1.08999 * 109.72383 * 166.39796 * 5 4 3 35 35 H 1.08999 * 109.71968 * 287.01237 * 5 4 3 36 36 H 0.97001 * 120.00066 * 5.00465 * 9 7 6 37 37 H 1.09004 * 109.46912 * 300.00672 * 10 9 7 38 38 H 1.09000 * 109.46949 * 60.00369 * 10 9 7 39 39 H 0.97001 * 119.99971 * 0.02562 * 13 11 10 40 40 H 0.96995 * 119.99749 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.47285 * 70.29636 * 24 22 6 42 42 H 1.09000 * 109.46739 * 190.29018 * 24 22 6 43 43 H 1.09000 * 109.47451 * 310.29286 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2440 2.0197 1.2895 5 6 3.2228 3.1875 1.1528 6 7 2.8117 3.9987 -0.0057 7 6 2.4497 5.2893 0.1349 8 8 2.2117 5.9645 -0.8477 9 7 2.3514 5.8314 1.3649 10 6 1.8529 7.1997 1.5247 11 6 1.8421 7.5629 2.9872 12 8 2.2137 6.7577 3.8148 13 7 1.4185 8.7819 3.3757 14 6 1.4081 9.1122 4.7063 15 1 1.7390 8.3953 5.4431 16 6 0.9709 10.3688 5.1068 17 7 0.5669 11.2406 4.2103 18 14 0.9561 10.8185 6.9199 19 1 2.3351 10.7283 7.4635 20 1 0.4505 12.2053 7.0817 21 1 0.0715 9.8796 7.6555 22 6 2.8129 3.3434 -1.3221 23 1 3.8357 3.2679 -1.6913 24 6 1.9730 4.1635 -2.3034 25 6 2.2301 1.9640 -1.1809 26 8 1.9351 1.3554 -2.1876 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.2951 2.3904 1.6772 33 1 2.6544 1.2879 1.9852 34 1 3.1968 3.7969 2.0562 35 1 4.2315 2.8055 0.9957 36 1 2.6107 5.3157 2.1445 37 1 2.5025 7.8884 0.9844 38 1 0.8407 7.2665 1.1259 39 1 1.1203 9.4254 2.7140 40 1 0.2620 12.1179 4.4900 41 1 2.4918 5.0932 -2.5370 42 1 1.8225 3.5915 -3.2190 43 1 1.0064 4.3900 -1.8534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:09 Heat of formation + Delta-G solvation = -73.500621 kcal Electronic energy + Delta-G solvation = -26542.951720 eV Core-core repulsion = 22624.337130 eV Total energy + Delta-G solvation = -3918.614590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27749 -39.68630 -38.28488 -36.79607 -35.61525 -34.65645 -33.87240 -31.77526 -31.45434 -31.02849 -28.74279 -27.35321 -25.49094 -24.40925 -23.69432 -22.83751 -20.56708 -19.71063 -18.94058 -18.19797 -17.91988 -17.51447 -16.54093 -16.24543 -15.90891 -15.62773 -15.35880 -14.74221 -14.61069 -14.41417 -14.13458 -14.09003 -13.85329 -13.48629 -13.31853 -13.12448 -13.01962 -12.33722 -12.26412 -12.19796 -12.06283 -11.92017 -11.87872 -11.66150 -11.59901 -11.21875 -11.13582 -10.53893 -10.36097 -10.34608 -9.66409 -9.44504 -9.10172 -8.98352 -8.67793 -8.61018 -8.14057 -6.54907 -3.97235 2.28149 2.37949 2.70512 3.10579 3.19192 3.22465 3.23371 3.70404 3.80925 4.07213 4.15220 4.39153 4.69733 4.71544 4.80558 4.87697 4.93771 5.00372 5.04611 5.13112 5.13765 5.21028 5.40636 5.46295 5.65238 5.72537 5.83193 5.91936 5.94773 5.99873 6.01399 6.04196 6.19832 6.44664 6.71681 6.81263 7.10746 7.42249 7.85002 7.88191 8.00908 8.40733 8.65063 9.00652 9.35327 9.82761 10.61811 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.002773 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.352961 B =10096.510850 C =10747.873396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.601 5.601 4 C 0.097 3.903 5 C 0.094 3.906 6 N -0.636 5.636 7 C 0.714 3.286 8 O -0.581 6.581 9 N -0.723 5.723 10 C 0.127 3.873 11 C 0.428 3.572 12 O -0.600 6.600 13 N -0.547 5.547 14 C -0.307 4.307 15 H 0.105 0.895 16 C 0.027 3.973 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.156 3.844 23 H 0.101 0.899 24 C -0.134 4.134 25 C 0.513 3.487 26 O -0.540 6.540 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.404 0.596 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -17.949 -6.949 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.334 5.334 4 C -0.027 4.027 5 C -0.030 4.030 6 N -0.377 5.377 7 C 0.416 3.584 8 O -0.459 6.459 9 N -0.382 5.382 10 C -0.001 4.001 11 C 0.213 3.787 12 O -0.487 6.487 13 N -0.182 5.182 14 C -0.436 4.436 15 H 0.123 0.877 16 C -0.176 4.176 17 N -0.534 5.534 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C 0.049 3.951 23 H 0.119 0.881 24 C -0.191 4.191 25 C 0.300 3.700 26 O -0.417 6.417 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.244 0.756 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.365 -18.013 -7.596 19.836 hybrid contribution -0.106 0.425 1.163 1.243 sum 3.259 -17.587 -6.432 19.008 Atomic orbital electron populations 1.22085 0.95631 1.02212 1.02562 1.21551 0.94938 0.82259 1.03208 1.47317 1.65372 1.14825 1.05906 1.21847 1.00474 0.95554 0.84795 1.22035 0.98111 0.92451 0.90363 1.47387 1.72440 1.10189 1.07637 1.15652 0.78085 0.80771 0.83928 1.90917 1.57536 1.60668 1.36754 1.45005 1.69729 1.16344 1.07168 1.20810 1.00420 0.82591 0.96261 1.19730 0.85599 0.84210 0.89124 1.90479 1.54426 1.50309 1.53517 1.41781 1.55211 1.12119 1.09061 1.19674 1.41550 0.99210 0.83163 0.87715 1.25331 0.96432 0.95513 1.00368 1.69604 1.42436 1.07071 1.34259 0.85873 0.78905 0.77517 0.81674 1.19764 1.20838 1.19765 1.21159 1.01335 0.88476 0.84092 0.88149 1.22076 1.00269 1.00099 0.96679 1.20454 0.78096 0.88488 0.82987 1.90716 1.51479 1.63901 1.35620 0.92088 0.92525 0.91603 0.90466 0.89628 0.90835 0.89130 0.87607 0.89884 0.75570 0.89800 0.90012 0.76989 0.91480 0.88368 0.91955 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.23 37.16 0.38 -1.02 16 2 C 0.10 0.84 5.89 -4.04 -0.02 0.82 16 3 N -0.60 -5.84 2.81 -174.90 -0.49 -6.33 16 4 C 0.10 0.75 6.57 -4.51 -0.03 0.72 16 5 C 0.09 0.81 6.51 -3.63 -0.02 0.78 16 6 N -0.64 -7.64 2.98 -172.26 -0.51 -8.15 16 7 C 0.71 10.92 8.01 -86.92 -0.70 10.22 16 8 O -0.58 -10.33 12.53 5.29 0.07 -10.26 16 9 N -0.72 -11.36 5.45 -66.42 -0.36 -11.72 16 10 C 0.13 2.25 6.16 -5.20 -0.03 2.21 16 11 C 0.43 9.39 7.85 -10.99 -0.09 9.30 16 12 O -0.60 -14.57 15.24 5.54 0.08 -14.49 16 13 N -0.55 -13.15 5.29 -10.96 -0.06 -13.21 16 14 C -0.31 -8.11 9.68 -14.93 -0.14 -8.26 16 15 H 0.11 2.87 7.16 -52.49 -0.38 2.50 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 17 N -0.89 -23.44 13.05 55.50 0.72 -22.72 16 18 Si 0.93 20.09 29.55 -169.99 -5.02 15.07 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 C 0.16 1.87 3.65 -68.92 -0.25 1.62 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 24 C -0.13 -1.79 7.64 37.16 0.28 -1.50 16 25 C 0.51 6.28 7.09 -11.75 -0.08 6.20 16 26 O -0.54 -8.05 15.47 5.56 0.09 -7.97 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.44 7.81 -51.93 -0.41 0.03 16 31 H 0.09 0.80 7.22 -51.93 -0.38 0.42 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.45 7.85 -51.93 -0.41 0.04 16 34 H 0.11 0.91 5.67 -51.93 -0.29 0.61 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.40 6.08 4.97 -40.82 -0.20 5.88 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.40 9.20 7.90 -40.82 -0.32 8.87 16 40 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.10 1.42 6.35 -51.93 -0.33 1.09 16 42 H 0.06 0.80 7.58 -51.93 -0.39 0.40 16 43 H 0.06 0.94 7.41 -51.93 -0.38 0.55 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -32.06 351.82 -7.00 -39.06 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.01 Total: 13.74 kcal Atomic # 6 Polarization: 22.48 SS G_CDS: -0.80 Total: 21.68 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.70 Total: -62.14 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: 0.24 Total: -32.71 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.06 -7.00 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.441 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds