Wall clock time and date at job start Fri Apr 10 2020 18:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47355 * 2 1 4 4 C 1.45646 * 117.70590 * 89.99383 * 3 2 1 5 5 C 1.52986 * 110.77142 * 158.10342 * 4 3 2 6 6 N 1.47274 * 108.18797 * 46.72707 * 5 4 3 7 7 C 1.34776 * 121.35450 * 118.52044 * 6 5 4 8 8 O 1.21582 * 120.00305 * 174.46940 * 7 6 5 9 9 N 1.34777 * 119.99986 * 354.46741 * 7 6 5 10 10 C 1.46499 * 120.00236 * 184.99965 * 9 7 6 11 11 C 1.50693 * 109.47290 * 180.02562 * 10 9 7 12 12 O 1.21298 * 120.00051 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.37096 * 120.00282 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00015 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99968 * 180.02562 * 14 13 11 17 17 N 1.31413 * 120.00142 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47195 * 60.00228 * 18 16 14 20 20 H 1.48500 * 109.46784 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47057 * 299.99749 * 18 16 14 22 22 C 1.47051 * 117.28994 * 298.49541 * 6 5 4 23 23 H 1.09003 * 109.56641 * 282.91175 * 22 6 5 24 24 C 1.53003 * 109.56279 * 162.67925 * 22 6 5 25 25 C 1.33379 * 117.70197 * 269.74025 * 3 2 1 26 26 O 1.21280 * 118.49013 * 4.29467 * 25 3 2 27 27 H 1.09001 * 109.47157 * 60.00511 * 1 2 3 28 28 H 1.08996 * 109.47093 * 300.00290 * 1 2 3 29 29 H 1.08996 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47157 * 119.99489 * 2 1 3 31 31 H 1.08994 * 109.47803 * 239.99530 * 2 1 3 32 32 H 1.09006 * 109.21798 * 278.43151 * 4 3 2 33 33 H 1.08995 * 109.21814 * 37.81343 * 4 3 2 34 34 H 1.08999 * 109.72383 * 166.39796 * 5 4 3 35 35 H 1.08999 * 109.71968 * 287.01237 * 5 4 3 36 36 H 0.97001 * 120.00066 * 5.00465 * 9 7 6 37 37 H 1.09004 * 109.46912 * 300.00672 * 10 9 7 38 38 H 1.09000 * 109.46949 * 60.00369 * 10 9 7 39 39 H 0.97001 * 119.99971 * 0.02562 * 13 11 10 40 40 H 0.96995 * 119.99749 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.47285 * 70.29636 * 24 22 6 42 42 H 1.09000 * 109.46739 * 190.29018 * 24 22 6 43 43 H 1.09000 * 109.47451 * 310.29286 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2440 2.0197 1.2895 5 6 3.2228 3.1875 1.1528 6 7 2.8117 3.9987 -0.0057 7 6 2.4497 5.2893 0.1349 8 8 2.2117 5.9645 -0.8477 9 7 2.3514 5.8314 1.3649 10 6 1.8529 7.1997 1.5247 11 6 1.8421 7.5629 2.9872 12 8 2.2137 6.7577 3.8148 13 7 1.4185 8.7819 3.3757 14 6 1.4081 9.1122 4.7063 15 1 1.7390 8.3953 5.4431 16 6 0.9709 10.3688 5.1068 17 7 0.5669 11.2406 4.2103 18 14 0.9561 10.8185 6.9199 19 1 2.3351 10.7283 7.4635 20 1 0.4505 12.2053 7.0817 21 1 0.0715 9.8796 7.6555 22 6 2.8129 3.3434 -1.3221 23 1 3.8357 3.2679 -1.6913 24 6 1.9730 4.1635 -2.3034 25 6 2.2301 1.9640 -1.1809 26 8 1.9351 1.3554 -2.1876 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.2951 2.3904 1.6772 33 1 2.6544 1.2879 1.9852 34 1 3.1968 3.7969 2.0562 35 1 4.2315 2.8055 0.9957 36 1 2.6107 5.3157 2.1445 37 1 2.5025 7.8884 0.9844 38 1 0.8407 7.2665 1.1259 39 1 1.1203 9.4254 2.7140 40 1 0.2620 12.1179 4.4900 41 1 2.4918 5.0932 -2.5370 42 1 1.8225 3.5915 -3.2190 43 1 1.0064 4.3900 -1.8534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358319627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:09 Heat of formation + Delta-G solvation = -97.070404 kcal Electronic energy + Delta-G solvation = -26543.973782 eV Core-core repulsion = 22624.337130 eV Total energy + Delta-G solvation = -3919.636653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25973 -40.87429 -39.98001 -37.72483 -36.63847 -36.20865 -35.48655 -33.36531 -32.64513 -31.99651 -29.68880 -28.76764 -26.69891 -25.97835 -24.47378 -23.68880 -21.72759 -21.34483 -20.20733 -19.84792 -18.94712 -18.55708 -17.60588 -17.24576 -17.17254 -16.90953 -16.65115 -16.37264 -15.98130 -15.74892 -15.49894 -15.07071 -14.91238 -14.76129 -14.21920 -14.14558 -14.00490 -13.72200 -13.52185 -13.47486 -13.26977 -13.09090 -12.87854 -12.78850 -12.69371 -12.57072 -12.44486 -12.12685 -11.88786 -11.53419 -11.38887 -10.65309 -10.52305 -10.26203 -10.07206 -9.88084 -9.63600 -8.48836 -5.98866 1.24250 1.39914 1.42548 1.45294 1.55638 1.83768 1.92823 2.08209 2.28923 2.73119 3.15357 3.18864 3.31010 3.66281 3.86840 4.03653 4.07826 4.16804 4.21565 4.24506 4.33664 4.45181 4.47832 4.49263 4.58172 4.68877 4.76862 4.84666 4.90716 4.97649 5.06460 5.23213 5.26280 5.40015 5.43416 5.47819 5.71033 5.94353 6.27568 6.49981 6.83790 6.95311 7.05637 7.41534 7.49613 7.96501 8.67839 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.002773 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.352961 B =10096.510850 C =10747.873396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.596 5.596 4 C 0.096 3.904 5 C 0.089 3.911 6 N -0.630 5.630 7 C 0.713 3.287 8 O -0.609 6.609 9 N -0.721 5.721 10 C 0.141 3.859 11 C 0.435 3.565 12 O -0.622 6.622 13 N -0.560 5.560 14 C -0.336 4.336 15 H 0.089 0.911 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.996 3.004 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.269 1.269 22 C 0.155 3.845 23 H 0.120 0.880 24 C -0.123 4.123 25 C 0.511 3.489 26 O -0.574 6.574 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.409 0.591 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.398 0.602 40 H 0.279 0.721 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -19.283 -5.677 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.328 5.328 4 C -0.027 4.027 5 C -0.033 4.033 6 N -0.370 5.370 7 C 0.414 3.586 8 O -0.490 6.490 9 N -0.381 5.381 10 C 0.013 3.987 11 C 0.222 3.778 12 O -0.510 6.510 13 N -0.195 5.195 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.212 4.212 17 N -0.558 5.558 18 Si 0.819 3.181 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.194 1.194 22 C 0.049 3.951 23 H 0.137 0.863 24 C -0.181 4.181 25 C 0.298 3.702 26 O -0.453 6.453 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.250 0.750 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.232 0.768 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.091 -19.392 -6.297 20.795 hybrid contribution -0.320 0.741 0.739 1.094 sum 3.771 -18.650 -5.559 19.823 Atomic orbital electron populations 1.22052 0.95933 1.03013 1.01101 1.21718 0.94637 0.81434 1.04365 1.47415 1.64125 1.15399 1.05834 1.22027 1.00212 0.96139 0.84307 1.22335 0.99728 0.92271 0.88974 1.47372 1.71475 1.09285 1.08825 1.15731 0.77979 0.81676 0.83181 1.90909 1.58758 1.61829 1.37466 1.44886 1.70009 1.15617 1.07636 1.20590 1.01325 0.83930 0.92884 1.20372 0.83548 0.83148 0.90705 1.90456 1.54828 1.50777 1.54911 1.41836 1.56212 1.12967 1.08512 1.19710 1.43104 0.99674 0.84033 0.89338 1.26119 0.95614 0.95021 1.04401 1.69677 1.42778 1.07388 1.35907 0.84943 0.78940 0.77478 0.76742 1.19417 1.19913 1.19409 1.21184 1.02021 0.88186 0.83729 0.86279 1.21891 0.99200 0.99846 0.97137 1.20422 0.78066 0.88313 0.83442 1.90704 1.53119 1.64607 1.36911 0.95147 0.92244 0.89761 0.86837 0.90880 0.91518 0.85145 0.87417 0.87253 0.75033 0.88931 0.89170 0.76764 0.91138 0.89493 0.91763 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.23 71.98 0.74 -1.76 16 2 C 0.10 1.41 5.89 86.38 0.51 1.92 16 3 N -0.60 -10.28 2.81 -826.44 -2.32 -12.60 16 4 C 0.10 1.17 6.57 86.54 0.57 1.74 16 5 C 0.09 1.28 6.51 86.23 0.56 1.84 16 6 N -0.63 -14.20 2.98 -817.16 -2.43 -16.63 16 7 C 0.71 21.19 8.01 179.05 1.43 22.62 16 8 O -0.61 -21.60 12.53 -3.97 -0.05 -21.65 16 9 N -0.72 -21.92 5.45 -482.31 -2.63 -24.55 16 10 C 0.14 4.89 6.16 85.63 0.53 5.41 16 11 C 0.44 19.02 7.85 87.66 0.69 19.71 16 12 O -0.62 -29.98 15.24 -3.08 -0.05 -30.03 16 13 N -0.56 -27.12 5.29 -306.99 -1.62 -28.75 16 14 C -0.34 -17.92 9.68 84.04 0.81 -17.11 16 15 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 16 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 17 N -0.92 -48.01 13.05 21.66 0.28 -47.72 16 18 Si 1.00 40.70 29.55 68.60 2.03 42.73 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 C 0.16 3.57 3.65 44.05 0.16 3.73 16 23 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 24 C -0.12 -3.34 7.64 71.98 0.55 -2.79 16 25 C 0.51 11.98 7.09 87.78 0.62 12.60 16 26 O -0.57 -17.02 15.47 -3.03 -0.05 -17.07 16 27 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.11 0.80 7.81 -2.39 -0.02 0.78 16 31 H 0.07 1.26 7.22 -2.39 -0.02 1.24 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.13 0.64 7.85 -2.39 -0.02 0.62 16 34 H 0.11 1.56 5.67 -2.39 -0.01 1.55 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.41 11.73 4.97 -92.71 -0.46 11.27 16 37 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 38 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.40 18.70 7.90 -92.71 -0.73 17.96 16 40 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.09 2.55 6.35 -2.39 -0.02 2.54 16 42 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 43 H 0.04 1.24 7.41 -2.39 -0.02 1.22 16 Total: -1.00 -69.81 351.82 0.66 -69.15 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.14 Total: 39.30 kcal Atomic # 6 Polarization: 40.19 SS G_CDS: 7.64 Total: 47.83 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -8.72 Total: -130.25 kcal Atomic # 8 Polarization: -68.61 SS G_CDS: -0.14 Total: -68.75 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -69.81 0.66 -69.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.919 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds