Wall clock time and date at job start Fri Apr 10 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46977 * 2 1 4 4 C 1.45652 * 117.70568 * 269.97763 * 3 2 1 5 5 C 1.53464 * 110.74203 * 158.00094 * 4 3 2 6 6 N 1.47268 * 107.93073 * 46.91442 * 5 4 3 7 7 C 1.34781 * 121.35546 * 118.51107 * 6 5 4 8 8 O 1.21589 * 119.99598 * 4.64388 * 7 6 5 9 9 N 1.34778 * 120.00427 * 184.64039 * 7 6 5 10 10 C 1.46491 * 119.99869 * 174.90933 * 9 7 6 11 11 C 1.50705 * 109.47095 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99761 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00411 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00274 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99782 * 359.72311 * 14 13 11 16 16 C 1.38948 * 119.99925 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99735 * 179.72821 * 16 14 13 18 18 Si 1.86796 * 120.00332 * 359.72053 * 16 14 13 19 19 H 1.48495 * 109.47321 * 90.00165 * 18 16 14 20 20 H 1.48506 * 109.47561 * 210.00579 * 18 16 14 21 21 H 1.48501 * 109.47100 * 330.00458 * 18 16 14 22 22 C 1.47050 * 117.29740 * 298.23869 * 6 5 4 23 23 H 1.09001 * 109.57207 * 162.92439 * 22 6 5 24 24 C 1.53002 * 109.56707 * 283.16996 * 22 6 5 25 25 C 1.33378 * 117.70831 * 89.99853 * 3 2 1 26 26 O 1.21282 * 118.48603 * 4.32075 * 25 3 2 27 27 H 1.09004 * 109.47445 * 60.00381 * 1 2 3 28 28 H 1.09000 * 109.47621 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47564 * 300.00440 * 1 2 3 30 30 H 1.08996 * 109.47113 * 240.00186 * 2 1 3 31 31 H 1.08997 * 109.46936 * 120.00054 * 2 1 3 32 32 H 1.09001 * 109.21551 * 278.46266 * 4 3 2 33 33 H 1.09007 * 109.21577 * 37.83407 * 4 3 2 34 34 H 1.08992 * 109.85312 * 287.31874 * 5 4 3 35 35 H 1.09001 * 109.84117 * 166.50411 * 5 4 3 36 36 H 0.97000 * 119.99132 * 354.91338 * 9 7 6 37 37 H 1.08995 * 109.47415 * 60.00406 * 10 9 7 38 38 H 1.09003 * 109.47469 * 299.99648 * 10 9 7 39 39 H 0.97000 * 119.99604 * 0.02562 * 13 11 10 40 40 H 0.97007 * 119.99736 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.47403 * 59.99492 * 24 22 6 42 42 H 1.09000 * 109.46869 * 179.97438 * 24 22 6 43 43 H 1.08996 * 109.46712 * 299.99358 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2445 2.0195 -1.2895 5 6 2.2144 3.5477 -1.1523 6 7 3.0472 3.9154 0.0054 7 6 4.1403 4.6912 -0.1351 8 8 4.4093 5.1719 -1.2191 9 7 4.9352 4.9342 0.9258 10 6 6.1816 5.6837 0.7507 11 6 6.8791 5.8163 2.0801 12 8 6.3838 5.3319 3.0757 13 7 8.0535 6.4721 2.1625 14 6 8.6877 6.5932 3.3720 15 1 8.2439 6.1669 4.2594 16 6 9.8983 7.2699 3.4570 17 7 10.5035 7.3905 4.6172 18 14 10.6657 8.0079 1.9221 19 1 10.1831 9.4015 1.7484 20 1 12.1443 8.0096 2.0596 21 1 10.2796 7.1993 0.7379 22 6 2.6342 3.4068 1.3219 23 1 3.4667 3.4848 2.0211 24 6 1.4511 4.2270 1.8400 25 6 2.2249 1.9659 1.1808 26 8 2.0766 1.3055 2.1872 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2153 1.7109 -1.6772 33 1 1.4651 1.7085 -1.9854 34 1 1.1906 3.8848 -0.9907 35 1 2.6158 4.0082 -2.0550 36 1 4.6819 4.6127 1.8052 37 1 5.9573 6.6751 0.3573 38 1 6.8293 5.1536 0.0524 39 1 8.4498 6.8592 1.3662 40 1 11.3489 7.8626 4.6764 41 1 0.6181 4.1444 1.1419 42 1 1.1460 3.8485 2.8156 43 1 1.7461 5.2723 1.9316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:11 Heat of formation + Delta-G solvation = -77.402896 kcal Electronic energy + Delta-G solvation = -26553.219138 eV Core-core repulsion = 22634.435333 eV Total energy + Delta-G solvation = -3918.783806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29124 -39.72689 -38.43603 -36.72762 -35.94813 -34.61879 -33.82814 -31.91553 -31.77759 -31.06647 -29.20400 -27.56039 -25.29492 -24.53273 -23.75001 -22.77337 -20.67072 -19.76153 -19.13382 -18.48178 -18.00968 -17.67403 -16.63742 -16.11359 -15.83497 -15.67930 -15.38508 -14.98670 -14.76942 -14.40468 -14.31867 -14.08490 -14.03314 -13.63375 -13.16787 -13.12690 -12.80546 -12.60496 -12.53017 -12.36895 -12.32776 -12.18860 -12.11438 -11.78681 -11.70320 -11.32847 -11.24528 -10.65187 -10.53878 -10.07277 -10.01369 -9.70838 -9.19737 -9.06554 -8.78858 -8.69731 -8.31436 -6.41302 -3.94015 2.24501 2.30867 2.67670 2.98849 3.03509 3.11905 3.11963 3.55169 3.74448 4.02085 4.02945 4.36237 4.50809 4.61175 4.67251 4.77292 4.79671 4.89026 4.97514 5.05519 5.13455 5.28436 5.34323 5.39241 5.45329 5.47302 5.60771 5.62899 5.74947 5.80341 5.80860 5.85050 5.96538 6.16924 6.52155 6.72305 7.07040 7.43635 7.78997 7.91624 8.00204 8.42331 8.53720 8.81040 9.28871 9.62076 10.70806 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.002890 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.665762 B = 9685.572348 C =10191.076365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.601 5.601 4 C 0.098 3.902 5 C 0.116 3.884 6 N -0.633 5.633 7 C 0.716 3.284 8 O -0.589 6.589 9 N -0.723 5.723 10 C 0.124 3.876 11 C 0.437 3.563 12 O -0.578 6.578 13 N -0.575 5.575 14 C -0.310 4.310 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.267 1.267 22 C 0.126 3.874 23 H 0.122 0.878 24 C -0.154 4.154 25 C 0.518 3.482 26 O -0.537 6.537 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.374 0.626 40 H 0.276 0.724 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.918 -9.855 -14.721 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.023 4.023 3 N -0.334 5.334 4 C -0.026 4.026 5 C -0.007 4.007 6 N -0.373 5.373 7 C 0.417 3.583 8 O -0.468 6.468 9 N -0.382 5.382 10 C -0.004 4.004 11 C 0.223 3.777 12 O -0.463 6.463 13 N -0.213 5.213 14 C -0.438 4.438 15 H 0.139 0.861 16 C -0.159 4.159 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 C 0.019 3.981 23 H 0.140 0.860 24 C -0.213 4.213 25 C 0.305 3.695 26 O -0.413 6.413 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.247 0.753 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.208 0.792 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.847 -10.057 -14.162 25.631 hybrid contribution 0.708 0.507 -0.748 1.148 sum -18.139 -9.550 -14.911 25.349 Atomic orbital electron populations 1.22093 0.95605 1.02361 1.02265 1.21546 0.94593 0.82523 1.03680 1.47281 1.65511 1.14719 1.05886 1.21949 1.02509 0.93393 0.84745 1.21895 0.95309 0.92853 0.90692 1.47420 1.27860 1.54371 1.07611 1.15618 0.79205 0.79023 0.84407 1.90905 1.74198 1.55706 1.25956 1.44931 1.22830 1.59630 1.10827 1.20851 0.85130 0.97379 0.97034 1.19630 0.83576 0.84793 0.89711 1.90547 1.66354 1.52008 1.37360 1.42103 1.19522 1.49337 1.10317 1.19444 1.03308 1.34332 0.86762 0.86052 1.25070 0.96394 0.97245 0.97208 1.69621 1.17173 1.40946 1.23518 0.86668 0.80075 0.80215 0.82516 1.19387 1.19990 1.19206 1.21426 1.00383 0.89928 0.86377 0.86004 1.22055 0.96458 1.00617 1.02135 1.20149 0.76990 0.89233 0.83154 1.90753 1.51890 1.63123 1.35574 0.92608 0.91463 0.92201 0.90465 0.89246 0.90957 0.89356 0.90476 0.86632 0.75273 0.89586 0.89825 0.79236 0.91373 0.91881 0.90027 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 10.23 37.16 0.38 -0.70 16 2 C 0.10 0.78 5.92 -4.04 -0.02 0.76 16 3 N -0.60 -5.62 2.80 -174.59 -0.49 -6.11 16 4 C 0.10 0.69 6.51 -4.26 -0.03 0.66 16 5 C 0.12 0.97 6.43 -3.38 -0.02 0.94 16 6 N -0.63 -7.34 2.62 -171.95 -0.45 -7.79 16 7 C 0.72 10.74 8.32 -86.91 -0.72 10.02 16 8 O -0.59 -10.20 15.84 5.29 0.08 -10.12 16 9 N -0.72 -11.60 5.44 -66.42 -0.36 -11.97 16 10 C 0.12 2.13 6.16 -5.20 -0.03 2.10 16 11 C 0.44 9.54 7.85 -10.99 -0.09 9.45 16 12 O -0.58 -14.57 15.24 5.54 0.08 -14.49 16 13 N -0.58 -13.27 5.09 -10.96 -0.06 -13.33 16 14 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 15 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 16 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 17 N -0.87 -24.92 13.96 55.50 0.77 -24.15 16 18 Si 0.88 18.89 27.73 -169.99 -4.71 14.18 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.23 6.53 56.52 0.37 -4.86 16 22 C 0.13 1.45 3.02 -68.91 -0.21 1.25 16 23 H 0.12 1.58 5.88 -51.93 -0.31 1.27 16 24 C -0.15 -1.48 9.38 37.16 0.35 -1.13 16 25 C 0.52 6.31 6.83 -11.73 -0.08 6.23 16 26 O -0.54 -8.22 16.18 5.56 0.09 -8.13 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.44 8.01 -51.93 -0.42 0.03 16 31 H 0.09 0.88 7.10 -51.93 -0.37 0.52 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.08 0.52 7.49 -51.93 -0.39 0.13 16 35 H 0.12 1.01 7.07 -51.93 -0.37 0.64 16 36 H 0.41 6.64 5.06 -40.82 -0.21 6.44 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.37 7.59 5.77 -40.82 -0.24 7.36 16 40 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.06 0.52 7.49 -51.93 -0.39 0.13 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -34.40 354.70 -6.45 -40.85 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.03 Total: 13.71 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: -0.72 Total: 22.01 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.58 Total: -63.35 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: 0.26 Total: -32.74 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.40 -6.45 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.551 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds