Wall clock time and date at job start Fri Apr 10 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46977 * 2 1 4 4 C 1.45652 * 117.70568 * 269.97763 * 3 2 1 5 5 C 1.53464 * 110.74203 * 158.00094 * 4 3 2 6 6 N 1.47268 * 107.93073 * 46.91442 * 5 4 3 7 7 C 1.34781 * 121.35546 * 118.51107 * 6 5 4 8 8 O 1.21589 * 119.99598 * 4.64388 * 7 6 5 9 9 N 1.34778 * 120.00427 * 184.64039 * 7 6 5 10 10 C 1.46491 * 119.99869 * 174.90933 * 9 7 6 11 11 C 1.50705 * 109.47095 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99761 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00411 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00274 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99782 * 359.72311 * 14 13 11 16 16 C 1.38948 * 119.99925 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99735 * 179.72821 * 16 14 13 18 18 Si 1.86796 * 120.00332 * 359.72053 * 16 14 13 19 19 H 1.48495 * 109.47321 * 90.00165 * 18 16 14 20 20 H 1.48506 * 109.47561 * 210.00579 * 18 16 14 21 21 H 1.48501 * 109.47100 * 330.00458 * 18 16 14 22 22 C 1.47050 * 117.29740 * 298.23869 * 6 5 4 23 23 H 1.09001 * 109.57207 * 162.92439 * 22 6 5 24 24 C 1.53002 * 109.56707 * 283.16996 * 22 6 5 25 25 C 1.33378 * 117.70831 * 89.99853 * 3 2 1 26 26 O 1.21282 * 118.48603 * 4.32075 * 25 3 2 27 27 H 1.09004 * 109.47445 * 60.00381 * 1 2 3 28 28 H 1.09000 * 109.47621 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47564 * 300.00440 * 1 2 3 30 30 H 1.08996 * 109.47113 * 240.00186 * 2 1 3 31 31 H 1.08997 * 109.46936 * 120.00054 * 2 1 3 32 32 H 1.09001 * 109.21551 * 278.46266 * 4 3 2 33 33 H 1.09007 * 109.21577 * 37.83407 * 4 3 2 34 34 H 1.08992 * 109.85312 * 287.31874 * 5 4 3 35 35 H 1.09001 * 109.84117 * 166.50411 * 5 4 3 36 36 H 0.97000 * 119.99132 * 354.91338 * 9 7 6 37 37 H 1.08995 * 109.47415 * 60.00406 * 10 9 7 38 38 H 1.09003 * 109.47469 * 299.99648 * 10 9 7 39 39 H 0.97000 * 119.99604 * 0.02562 * 13 11 10 40 40 H 0.97007 * 119.99736 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.47403 * 59.99492 * 24 22 6 42 42 H 1.09000 * 109.46869 * 179.97438 * 24 22 6 43 43 H 1.08996 * 109.46712 * 299.99358 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2445 2.0195 -1.2895 5 6 2.2144 3.5477 -1.1523 6 7 3.0472 3.9154 0.0054 7 6 4.1403 4.6912 -0.1351 8 8 4.4093 5.1719 -1.2191 9 7 4.9352 4.9342 0.9258 10 6 6.1816 5.6837 0.7507 11 6 6.8791 5.8163 2.0801 12 8 6.3838 5.3319 3.0757 13 7 8.0535 6.4721 2.1625 14 6 8.6877 6.5932 3.3720 15 1 8.2439 6.1669 4.2594 16 6 9.8983 7.2699 3.4570 17 7 10.5035 7.3905 4.6172 18 14 10.6657 8.0079 1.9221 19 1 10.1831 9.4015 1.7484 20 1 12.1443 8.0096 2.0596 21 1 10.2796 7.1993 0.7379 22 6 2.6342 3.4068 1.3219 23 1 3.4667 3.4848 2.0211 24 6 1.4511 4.2270 1.8400 25 6 2.2249 1.9659 1.1808 26 8 2.0766 1.3055 2.1872 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2153 1.7109 -1.6772 33 1 1.4651 1.7085 -1.9854 34 1 1.1906 3.8848 -0.9907 35 1 2.6158 4.0082 -2.0550 36 1 4.6819 4.6127 1.8052 37 1 5.9573 6.6751 0.3573 38 1 6.8293 5.1536 0.0524 39 1 8.4498 6.8592 1.3662 40 1 11.3489 7.8626 4.6764 41 1 0.6181 4.1444 1.1419 42 1 1.1460 3.8485 2.8156 43 1 1.7461 5.2723 1.9316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358319631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:11 Heat of formation + Delta-G solvation = -104.213588 kcal Electronic energy + Delta-G solvation = -26554.381737 eV Core-core repulsion = 22634.435333 eV Total energy + Delta-G solvation = -3919.946404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.23496 -40.94325 -40.11323 -37.68381 -36.83212 -36.31281 -35.39819 -33.84203 -32.61086 -31.91989 -30.16411 -28.88236 -26.47218 -25.84891 -24.69755 -23.53392 -21.72952 -21.49995 -20.71513 -19.91842 -18.91992 -18.63700 -17.59039 -17.47020 -17.06536 -16.90136 -16.60058 -16.57312 -15.98421 -15.72673 -15.44616 -15.06314 -14.88018 -14.73473 -14.61361 -14.32551 -14.06015 -13.87337 -13.68057 -13.48881 -13.30754 -13.03412 -12.97374 -12.93937 -12.60371 -12.45419 -12.44418 -11.99919 -11.92270 -11.66476 -11.58194 -11.07941 -10.66877 -10.38184 -10.30565 -9.89638 -9.67277 -8.45574 -6.07967 1.27024 1.31848 1.34473 1.36683 1.44877 1.77610 1.83825 2.00664 2.20886 2.51932 2.90423 3.10620 3.21458 3.67255 3.80518 3.91003 3.97974 4.11938 4.15320 4.28274 4.37385 4.42246 4.43922 4.52568 4.59357 4.64709 4.65646 4.82305 4.86995 5.01969 5.08383 5.16261 5.21507 5.29079 5.43131 5.49153 5.67314 5.88007 6.26438 6.48434 6.68063 6.78116 6.94488 7.26441 7.36052 7.78029 8.70952 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.002890 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.665762 B = 9685.572348 C =10191.076365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.098 3.902 5 C 0.110 3.890 6 N -0.625 5.625 7 C 0.718 3.282 8 O -0.610 6.610 9 N -0.732 5.732 10 C 0.137 3.863 11 C 0.443 3.557 12 O -0.617 6.617 13 N -0.576 5.576 14 C -0.332 4.332 15 H 0.062 0.938 16 C -0.009 4.009 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.255 1.255 20 H -0.274 1.274 21 H -0.231 1.231 22 C 0.127 3.873 23 H 0.101 0.899 24 C -0.147 4.147 25 C 0.514 3.486 26 O -0.579 6.579 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.405 0.595 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.393 0.607 40 H 0.281 0.719 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.993 -9.744 -18.968 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.027 4.027 3 N -0.326 5.326 4 C -0.025 4.025 5 C -0.011 4.011 6 N -0.364 5.364 7 C 0.419 3.581 8 O -0.490 6.490 9 N -0.390 5.390 10 C 0.009 3.991 11 C 0.231 3.769 12 O -0.503 6.503 13 N -0.216 5.216 14 C -0.461 4.461 15 H 0.080 0.920 16 C -0.209 4.209 17 N -0.566 5.566 18 Si 0.780 3.220 19 H -0.180 1.180 20 H -0.199 1.199 21 H -0.154 1.154 22 C 0.019 3.981 23 H 0.119 0.881 24 C -0.205 4.205 25 C 0.301 3.699 26 O -0.459 6.459 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.244 0.756 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.229 0.771 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.973 -9.975 -18.471 28.975 hybrid contribution 0.928 0.363 0.629 1.178 sum -19.045 -9.612 -17.842 27.811 Atomic orbital electron populations 1.22032 0.94284 1.03229 1.02006 1.21703 0.95641 0.81584 1.03791 1.47406 1.64048 1.15276 1.05870 1.22147 1.04053 0.92271 0.84006 1.22214 0.95788 0.93819 0.89318 1.47458 1.27123 1.53189 1.08642 1.15633 0.79650 0.79203 0.83601 1.90889 1.74958 1.56766 1.26435 1.44973 1.22896 1.59962 1.11201 1.20754 0.85507 0.99147 0.93673 1.20550 0.82765 0.82509 0.91101 1.90539 1.67182 1.52945 1.39594 1.41893 1.19970 1.50255 1.09483 1.19019 1.04479 1.35663 0.86905 0.92033 1.26099 0.96258 0.97004 1.01540 1.69790 1.17969 1.42129 1.26741 0.85422 0.78505 0.79906 0.78141 1.17979 1.19907 1.15410 1.21374 1.00382 0.90252 0.86058 0.88099 1.22001 0.96213 0.99962 1.02367 1.20217 0.76918 0.89208 0.83599 1.90735 1.54055 1.63924 1.37167 0.90637 0.90126 0.94534 0.87564 0.91917 0.91055 0.85259 0.88191 0.86542 0.75619 0.87404 0.87727 0.77122 0.90917 0.89944 0.90470 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.23 71.98 0.74 -0.96 16 2 C 0.09 1.31 5.92 86.38 0.51 1.82 16 3 N -0.59 -9.97 2.80 -825.44 -2.32 -12.29 16 4 C 0.10 1.03 6.51 86.69 0.56 1.60 16 5 C 0.11 1.50 6.43 86.39 0.56 2.05 16 6 N -0.63 -13.48 2.62 -816.17 -2.14 -15.61 16 7 C 0.72 20.36 8.32 179.05 1.49 21.85 16 8 O -0.61 -19.68 15.84 -4.00 -0.06 -19.74 16 9 N -0.73 -22.87 5.44 -482.30 -2.62 -25.50 16 10 C 0.14 4.45 6.16 85.64 0.53 4.98 16 11 C 0.44 19.38 7.85 87.66 0.69 20.07 16 12 O -0.62 -32.26 15.24 -3.08 -0.05 -32.31 16 13 N -0.58 -26.43 5.09 -306.98 -1.56 -27.99 16 14 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 15 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 16 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 17 N -0.93 -54.70 13.96 21.66 0.30 -54.40 16 18 Si 0.96 37.91 27.73 68.60 1.90 39.82 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.23 -7.71 6.53 99.48 0.65 -7.06 16 22 C 0.13 2.88 3.02 44.06 0.13 3.01 16 23 H 0.10 2.73 5.88 -2.39 -0.01 2.72 16 24 C -0.15 -2.72 9.38 71.98 0.67 -2.05 16 25 C 0.51 12.33 6.83 87.79 0.60 12.93 16 26 O -0.58 -18.32 16.18 -3.04 -0.05 -18.37 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 0.87 8.01 -2.39 -0.02 0.85 16 31 H 0.06 1.23 7.10 -2.39 -0.02 1.22 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.13 0.40 8.07 -2.38 -0.02 0.38 16 34 H 0.10 0.94 7.49 -2.39 -0.02 0.93 16 35 H 0.12 1.66 7.07 -2.39 -0.02 1.64 16 36 H 0.40 13.40 5.06 -92.71 -0.47 12.93 16 37 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.39 14.97 5.77 -92.71 -0.53 14.44 16 40 H 0.28 15.15 8.31 -92.70 -0.77 14.38 16 41 H 0.08 1.19 7.49 -2.39 -0.02 1.17 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -80.04 354.70 1.20 -78.84 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.01 Total: 40.32 kcal Atomic # 6 Polarization: 39.42 SS G_CDS: 7.80 Total: 47.23 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -8.33 Total: -135.79 kcal Atomic # 8 Polarization: -70.26 SS G_CDS: -0.16 Total: -70.42 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.82 kcal Total: -80.04 1.20 -78.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.377 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds