Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46864 * 2 1 4 4 C 1.46700 * 119.81748 * 269.72542 * 3 2 1 5 5 C 1.53578 * 108.77468 * 108.76046 * 4 3 2 6 6 C 1.52449 * 110.10225 * 88.81697 * 5 4 3 7 7 N 1.46071 * 111.51169 * 297.25642 * 6 5 4 8 8 C 1.34777 * 119.80796 * 242.95811 * 7 6 5 9 9 O 1.21584 * 120.00369 * 354.74008 * 8 7 6 10 10 N 1.34779 * 119.99745 * 174.73849 * 8 7 6 11 11 C 1.46503 * 119.99578 * 184.96058 * 10 8 7 12 12 C 1.50700 * 109.46748 * 179.97438 * 11 10 8 13 13 O 1.21292 * 120.00271 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99977 * 179.97438 * 12 11 10 15 15 C 1.37100 * 120.00191 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99970 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99899 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00610 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99651 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46966 * 89.99951 * 19 17 15 21 21 H 1.48504 * 109.46890 * 209.99940 * 19 17 15 22 22 H 1.48496 * 109.47282 * 329.99740 * 19 17 15 23 23 C 1.46669 * 120.37938 * 62.93578 * 7 6 5 24 24 C 1.34245 * 119.81406 * 89.99976 * 3 2 1 25 25 O 1.21281 * 120.35231 * 357.09594 * 24 3 2 26 26 H 1.09003 * 109.47274 * 300.00270 * 1 2 3 27 27 H 1.09009 * 109.47023 * 59.99695 * 1 2 3 28 28 H 1.08997 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46719 * 119.99748 * 2 1 3 30 30 H 1.08996 * 109.46853 * 240.00503 * 2 1 3 31 31 H 1.08988 * 109.53874 * 228.60888 * 4 3 2 32 32 H 1.09004 * 109.53365 * 348.85590 * 4 3 2 33 33 H 1.08996 * 109.45271 * 328.58274 * 5 4 3 34 34 H 1.09007 * 109.32942 * 208.96953 * 5 4 3 35 35 H 1.08997 * 109.07285 * 176.73437 * 6 5 4 36 36 H 1.09003 * 109.01834 * 57.74145 * 6 5 4 37 37 H 0.96993 * 120.00357 * 4.96243 * 10 8 7 38 38 H 1.08991 * 109.47362 * 299.99903 * 11 10 8 39 39 H 1.09000 * 109.46905 * 60.00427 * 11 10 8 40 40 H 0.97002 * 120.00093 * 0.02562 * 14 12 11 41 41 H 0.96996 * 120.00620 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.59803 * 158.24574 * 23 7 6 43 43 H 1.08990 * 109.72847 * 37.85424 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2672 2.0670 -1.2728 5 6 1.1872 3.1398 -1.4757 6 6 1.6292 4.4545 -0.8431 7 7 1.7971 4.3238 0.6021 8 6 1.0189 5.0432 1.4348 9 8 0.2471 5.8679 0.9850 10 7 1.0964 4.8483 2.7661 11 6 0.1757 5.5502 3.6639 12 6 0.4694 5.1602 5.0896 13 8 1.3604 4.3737 5.3320 14 7 -0.2574 5.6861 6.0955 15 6 0.0101 5.3317 7.3926 16 1 0.8034 4.6314 7.6084 17 6 -0.7395 5.8735 8.4295 18 7 -1.7045 6.7260 8.1670 19 14 -0.3745 5.3911 10.1969 20 1 0.6301 6.3242 10.7673 21 1 -1.6239 5.4596 10.9967 22 1 0.1602 4.0062 10.2317 23 6 2.8074 3.4138 1.1521 24 6 2.2408 2.0106 1.1648 25 8 1.9901 1.4605 2.2162 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.2504 2.5366 -1.2476 32 1 2.2271 1.3459 -2.0892 33 1 0.2571 2.8107 -1.0124 34 1 1.0234 3.2896 -2.5429 35 1 0.8784 5.2180 -1.0467 36 1 2.5772 4.7606 -1.2855 37 1 1.7616 4.2434 3.1299 38 1 0.3042 6.6262 3.5474 39 1 -0.8505 5.2780 3.4172 40 1 -0.9697 6.3154 5.9017 41 1 -2.2276 7.1045 8.8909 42 1 3.0572 3.7165 2.1690 43 1 3.7034 3.4408 0.5321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377047373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -113.796823 kcal Electronic energy + Delta-G solvation = -26830.032698 eV Core-core repulsion = 22909.670733 eV Total energy + Delta-G solvation = -3920.361965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.04093 -40.76145 -40.01545 -37.80982 -36.59322 -36.29252 -35.42871 -33.43782 -33.11639 -31.97245 -29.44310 -28.56366 -27.02634 -26.05228 -24.21234 -23.10572 -21.43433 -21.19131 -20.28947 -20.09049 -19.53985 -18.35520 -17.77074 -17.39873 -17.32171 -16.75995 -16.57938 -16.06411 -16.01633 -15.73891 -15.35532 -15.11447 -14.87702 -14.79165 -14.54887 -14.21897 -14.06828 -13.65223 -13.57155 -13.51919 -13.45173 -13.09532 -12.92429 -12.82006 -12.47814 -12.40041 -12.14008 -11.95387 -11.83577 -11.59052 -11.41974 -11.18571 -10.58778 -10.36202 -10.11325 -9.79304 -9.64307 -8.52538 -6.02926 1.11574 1.34807 1.40834 1.53979 1.73528 1.83255 1.90341 2.09518 2.27223 2.76913 3.09884 3.14013 3.40510 3.79888 3.92040 3.95127 4.11514 4.16372 4.27619 4.32020 4.34745 4.40025 4.40857 4.43867 4.53016 4.73187 4.77428 4.86552 4.95109 4.97348 5.20362 5.22655 5.30636 5.36578 5.41988 5.56727 5.70118 5.90146 6.31660 6.46432 6.71228 7.01786 7.08381 7.32778 7.42622 7.92954 8.64541 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.003157 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.796922 B = 8867.538972 C = 9618.692389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.603 5.603 4 C 0.104 3.896 5 C -0.152 4.152 6 C 0.115 3.885 7 N -0.612 5.612 8 C 0.705 3.295 9 O -0.618 6.618 10 N -0.728 5.728 11 C 0.140 3.860 12 C 0.430 3.570 13 O -0.623 6.623 14 N -0.557 5.557 15 C -0.339 4.339 16 H 0.083 0.917 17 C -0.010 4.010 18 N -0.915 5.915 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.269 1.269 22 H -0.273 1.273 23 C 0.096 3.904 24 C 0.489 3.511 25 O -0.582 6.582 26 H 0.015 0.985 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.043 0.957 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.407 0.593 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.399 0.601 41 H 0.281 0.719 42 H 0.093 0.907 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -8.635 -25.133 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.335 5.335 4 C -0.017 4.017 5 C -0.192 4.192 6 C -0.006 4.006 7 N -0.350 5.350 8 C 0.406 3.594 9 O -0.499 6.499 10 N -0.387 5.387 11 C 0.012 3.988 12 C 0.217 3.783 13 O -0.511 6.511 14 N -0.193 5.193 15 C -0.468 4.468 16 H 0.101 0.899 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.031 4.031 24 C 0.276 3.724 25 O -0.460 6.460 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.062 0.938 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.246 0.754 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.314 -8.750 -24.635 27.432 hybrid contribution -0.432 -0.062 1.508 1.570 sum 7.882 -8.812 -23.127 25.973 Atomic orbital electron populations 1.22087 0.96443 1.02661 1.00848 1.21610 0.94106 0.82009 1.03844 1.48180 1.64162 1.14585 1.06590 1.22267 0.99337 0.95821 0.84281 1.22472 0.98616 0.94644 1.03429 1.21616 1.04333 0.98838 0.75813 1.46880 1.37431 1.43466 1.07254 1.15947 0.80992 0.81454 0.80997 1.90867 1.43539 1.38919 1.76575 1.45022 1.39160 1.49851 1.04692 1.20614 0.94097 0.98107 0.85988 1.20436 0.85144 0.85137 0.87575 1.90496 1.35776 1.39873 1.84960 1.41797 1.31664 1.40306 1.05517 1.19732 1.18128 1.26359 0.82589 0.89853 1.26135 0.94979 0.95629 1.04278 1.69675 1.20760 1.29671 1.35416 0.84862 0.78139 0.78677 0.76251 1.19272 1.19399 1.19726 1.21991 0.93257 0.84812 1.03024 1.21637 0.78034 0.89122 0.83644 1.90792 1.53025 1.69162 1.33066 0.96599 0.91238 0.90186 0.92395 0.86222 0.87863 0.85911 0.93766 0.85675 0.90176 0.87181 0.75366 0.88347 0.89477 0.76651 0.90985 0.88927 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.24 71.98 0.74 -2.23 16 2 C 0.11 1.72 6.10 86.38 0.53 2.24 16 3 N -0.60 -10.28 2.47 -820.11 -2.02 -12.31 16 4 C 0.10 0.72 5.90 86.54 0.51 1.23 16 5 C -0.15 -1.55 5.94 30.61 0.18 -1.36 16 6 C 0.12 1.74 5.92 86.28 0.51 2.25 16 7 N -0.61 -14.53 2.68 -844.75 -2.26 -16.79 16 8 C 0.70 24.08 8.26 179.05 1.48 25.56 16 9 O -0.62 -24.19 15.65 -3.98 -0.06 -24.26 16 10 N -0.73 -27.80 5.40 -482.30 -2.60 -30.40 16 11 C 0.14 5.74 6.16 85.63 0.53 6.27 16 12 C 0.43 21.70 7.85 87.66 0.69 22.39 16 13 O -0.62 -35.47 15.24 -3.07 -0.05 -35.52 16 14 N -0.56 -29.72 5.29 -306.99 -1.62 -31.34 16 15 C -0.34 -19.63 9.68 84.04 0.81 -18.82 16 16 H 0.08 5.11 7.16 -2.91 -0.02 5.09 16 17 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 18 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 19 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.10 2.01 5.33 85.80 0.46 2.47 16 24 C 0.49 12.78 7.26 87.94 0.64 13.42 16 25 O -0.58 -22.21 16.71 -3.03 -0.05 -22.26 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 1.05 8.08 -2.38 -0.02 1.03 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.25 7.46 -2.39 -0.02 1.23 16 30 H 0.12 0.89 7.84 -2.39 -0.02 0.88 16 31 H 0.10 0.26 6.71 -2.39 -0.02 0.25 16 32 H 0.12 0.10 7.75 -2.39 -0.02 0.08 16 33 H 0.04 0.78 7.97 -2.39 -0.02 0.76 16 34 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.08 1.62 6.85 -2.39 -0.02 1.60 16 36 H 0.11 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.41 16.24 5.06 -92.71 -0.47 15.77 16 38 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.40 20.31 7.90 -92.71 -0.73 19.58 16 41 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.09 2.40 6.08 -2.39 -0.01 2.39 16 43 H 0.15 1.60 7.17 -2.39 -0.02 1.59 16 Total: -1.00 -83.32 354.62 1.03 -82.29 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -0.15 Total: 41.62 kcal Atomic # 6 Polarization: 45.83 SS G_CDS: 7.54 Total: 53.37 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -8.23 Total: -140.67 kcal Atomic # 8 Polarization: -81.87 SS G_CDS: -0.16 Total: -82.03 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -83.32 1.03 -82.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377047373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.505 kcal (2) G-P(sol) polarization free energy of solvation -83.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds