Wall clock time and date at job start Fri Apr 10 2020 18:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37090 * 119.99850 * 2 1 4 4 H 1.08002 * 119.99888 * 142.83694 * 3 2 1 5 5 C 1.38950 * 120.00130 * 322.83292 * 3 2 1 6 6 N 1.31411 * 119.99991 * 158.39644 * 5 3 2 7 7 Si 1.86798 * 120.00119 * 338.39663 * 5 3 2 8 8 H 1.48497 * 109.47185 * 95.71687 * 7 5 3 9 9 H 1.48506 * 109.47155 * 215.72002 * 7 5 3 10 10 H 1.48500 * 109.46990 * 335.71403 * 7 5 3 11 11 C 1.34778 * 119.99398 * 179.97438 * 2 1 3 12 12 O 1.21303 * 119.99128 * 180.02562 * 11 2 1 13 13 C 1.50690 * 120.00309 * 0.02562 * 11 2 1 14 14 H 1.09000 * 110.42345 * 57.31097 * 13 11 2 15 15 C 1.54477 * 110.37441 * 294.99945 * 13 11 2 16 16 C 1.54516 * 104.06315 * 217.19101 * 15 13 11 17 17 C 1.54478 * 104.06238 * 0.02562 * 16 15 13 18 18 H 1.08998 * 110.37368 * 265.03717 * 17 16 15 19 19 C 1.50697 * 110.37633 * 142.80933 * 17 16 15 20 20 O 1.21278 * 120.00173 * 245.00243 * 19 17 16 21 21 N 1.34780 * 119.99856 * 64.99261 * 19 17 16 22 22 C 1.47151 * 120.98123 * 359.72390 * 21 19 17 23 23 C 1.53714 * 108.16088 * 129.42694 * 22 21 19 24 24 O 1.42968 * 109.14453 * 52.53937 * 23 22 21 25 25 C 1.42967 * 114.16683 * 297.28613 * 24 23 22 26 26 C 1.47150 * 120.98180 * 180.02562 * 21 19 17 27 27 O 1.44428 * 104.80586 * 23.97769 * 17 16 15 28 28 H 1.08998 * 109.47316 * 265.15468 * 1 2 3 29 29 H 1.09009 * 109.47272 * 25.15738 * 1 2 3 30 30 H 1.08999 * 109.47372 * 145.15256 * 1 2 3 31 31 H 0.96999 * 120.00202 * 180.02562 * 6 5 3 32 32 H 1.09003 * 110.50948 * 335.83342 * 15 13 11 33 33 H 1.08995 * 110.51075 * 98.54450 * 15 13 11 34 34 H 1.09003 * 110.50999 * 118.64344 * 16 15 13 35 35 H 1.08992 * 110.51137 * 241.21931 * 16 15 13 36 36 H 1.08995 * 109.68464 * 249.20386 * 22 21 19 37 37 H 1.09007 * 109.68035 * 9.76432 * 22 21 19 38 38 H 1.09005 * 109.65924 * 292.57311 * 23 22 21 39 39 H 1.08998 * 109.48341 * 172.39868 * 23 22 21 40 40 H 1.09004 * 109.50972 * 302.66124 * 25 24 23 41 41 H 1.08998 * 109.55101 * 182.53493 * 25 24 23 42 42 H 1.09005 * 109.68053 * 350.24068 * 26 21 19 43 43 H 1.09000 * 109.68103 * 110.79335 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1872 0.0000 4 1 3.0660 1.2822 0.5650 5 6 1.6674 2.2684 -0.7270 6 7 2.0430 3.4890 -0.4172 7 14 0.4840 1.9868 -2.1446 8 1 -0.9113 2.1584 -1.6663 9 1 0.7617 2.9686 -3.2237 10 1 0.6611 0.6096 -2.6711 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 1 0.7177 -2.5260 -0.8594 15 6 0.5858 -2.6317 1.3127 16 6 0.6951 -4.1382 1.6382 17 6 1.5481 -4.7106 0.4845 18 1 0.9058 -5.1094 -0.3007 19 6 2.4739 -5.7829 0.9985 20 8 3.6746 -5.6153 0.9633 21 7 1.9676 -6.9280 1.4974 22 6 0.5144 -7.1513 1.5562 23 6 0.2141 -8.5201 0.9245 24 8 1.0342 -9.5131 1.5454 25 6 2.4374 -9.3149 1.3565 26 6 2.8516 -7.9890 2.0056 27 8 2.3071 -3.5845 -0.0072 28 1 -0.3634 -0.0868 1.0240 29 1 -0.3634 0.9302 -0.4369 30 1 -0.3634 -0.8434 -0.5872 31 1 1.7055 4.2438 -0.9244 32 1 1.0340 -2.0357 2.1078 33 1 -0.4557 -2.3480 1.1622 34 1 1.1972 -4.2870 2.5942 35 1 -0.2927 -4.5988 1.6510 36 1 0.1832 -7.1426 2.5946 37 1 -0.0003 -6.3680 0.9995 38 1 0.4291 -8.4862 -0.1436 39 1 -0.8363 -8.7682 1.0768 40 1 2.6604 -9.2838 0.2900 41 1 2.9871 -10.1343 1.8197 42 1 3.8855 -7.7606 1.7467 43 1 2.7514 -8.0629 3.0884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408356084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:19 Heat of formation + Delta-G solvation = -152.428120 kcal Electronic energy + Delta-G solvation = -27066.853681 eV Core-core repulsion = 23112.523787 eV Total energy + Delta-G solvation = -3954.329894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93171 -40.92838 -39.65095 -38.80379 -36.78356 -35.96867 -34.28437 -33.27767 -32.55923 -31.18189 -28.96914 -28.11475 -27.20901 -25.37879 -24.80803 -23.28628 -22.48139 -20.98885 -20.40660 -19.15105 -18.74934 -17.95486 -17.70605 -17.65771 -17.31767 -16.89449 -16.71942 -16.09483 -16.06777 -15.80334 -15.66256 -15.45420 -15.04242 -14.87959 -14.56771 -14.36249 -14.26103 -13.98446 -13.58032 -13.50121 -13.15387 -12.88152 -12.75582 -12.66807 -12.51494 -12.34481 -12.21494 -11.93646 -11.81930 -11.65610 -11.33162 -11.21467 -11.03614 -10.72605 -10.31532 -9.75776 -9.68844 -8.54247 -6.19049 1.19174 1.33586 1.37804 1.47148 1.51907 1.84497 2.16969 2.36238 2.85994 2.87760 3.05858 3.23173 3.52112 3.72618 3.75204 3.83125 3.95732 3.97551 4.02424 4.10718 4.19582 4.25593 4.32860 4.37209 4.45151 4.52440 4.63874 4.65020 4.74058 4.76675 4.84608 4.86457 4.94115 4.96302 5.05044 5.28214 5.45917 5.65611 5.98545 6.10750 6.16036 6.53732 6.89446 6.98479 7.21922 7.81065 8.63528 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.034378 B = 0.003069 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.290326 B = 9122.028530 C = 9490.500058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.474 5.474 3 C -0.343 4.343 4 H 0.034 0.966 5 C 0.009 3.991 6 N -0.912 5.912 7 Si 0.960 3.040 8 H -0.226 1.226 9 H -0.292 1.292 10 H -0.257 1.257 11 C 0.451 3.549 12 O -0.617 6.617 13 C 0.065 3.935 14 H 0.130 0.870 15 C -0.138 4.138 16 C -0.129 4.129 17 C 0.046 3.954 18 H 0.139 0.861 19 C 0.515 3.485 20 O -0.578 6.578 21 N -0.610 5.610 22 C 0.061 3.939 23 C 0.042 3.958 24 O -0.393 6.393 25 C 0.057 3.943 26 C 0.072 3.928 27 O -0.369 6.369 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.282 0.718 32 H 0.054 0.946 33 H 0.141 0.859 34 H 0.067 0.933 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.138 0.862 40 H 0.052 0.948 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -26.445 2.910 32.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.197 5.197 3 C -0.471 4.471 4 H 0.052 0.948 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.782 3.218 8 H -0.150 1.150 9 H -0.219 1.219 10 H -0.181 1.181 11 C 0.241 3.759 12 O -0.501 6.501 13 C 0.004 3.996 14 H 0.147 0.853 15 C -0.176 4.176 16 C -0.166 4.166 17 C -0.014 4.014 18 H 0.156 0.844 19 C 0.303 3.697 20 O -0.456 6.456 21 N -0.345 5.345 22 C -0.060 4.060 23 C -0.035 4.035 24 O -0.311 6.311 25 C -0.021 4.021 26 C -0.050 4.050 27 O -0.287 6.287 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.169 0.831 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.156 0.844 40 H 0.070 0.930 41 H 0.144 0.856 42 H 0.096 0.904 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.434 -26.286 2.925 31.138 hybrid contribution 1.023 1.082 -0.526 1.580 sum -15.411 -25.203 2.399 29.639 Atomic orbital electron populations 1.22461 0.79240 1.03303 1.04084 1.43684 1.06473 1.03692 1.65829 1.18628 1.09586 0.87986 1.30884 0.94766 1.26299 1.00148 0.93584 0.99324 1.69875 1.45939 0.99384 1.39669 0.85691 0.79481 0.78949 0.77663 1.14997 1.21920 1.18064 1.21107 0.87893 0.86268 0.80635 1.90572 1.17263 1.87826 1.54466 1.23058 0.90168 0.84236 1.02117 0.85313 1.23070 1.02884 0.97191 0.94459 1.23084 1.02329 0.94385 0.96810 1.23268 0.91964 0.87212 0.98955 0.84351 1.20816 0.88560 0.83163 0.77136 1.90739 1.18356 1.79545 1.57000 1.48151 1.09082 1.15783 1.61533 1.23082 0.78236 1.00072 1.04636 1.23325 0.97257 0.86461 0.96461 1.87960 1.16713 1.49992 1.76436 1.22981 0.82483 0.96438 1.00171 1.22402 0.95415 0.87337 0.99890 1.89423 1.35173 1.18064 1.86024 0.89608 0.92339 0.87783 0.90822 0.92658 0.84075 0.91394 0.83129 0.88264 0.85912 0.92395 0.84420 0.92979 0.85613 0.90382 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.67 7.66 127.77 0.98 2.64 16 2 N -0.47 -23.17 2.59 -658.88 -1.70 -24.87 16 3 C -0.34 -20.89 9.37 84.04 0.79 -20.10 16 4 H 0.03 2.49 7.90 -2.91 -0.02 2.47 16 5 C 0.01 0.48 5.29 84.93 0.45 0.93 16 6 N -0.91 -54.99 13.96 21.66 0.30 -54.69 16 7 Si 0.96 40.88 24.96 68.60 1.71 42.59 16 8 H -0.23 -7.89 6.69 99.48 0.67 -7.22 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 11 C 0.45 22.67 6.95 87.65 0.61 23.28 16 12 O -0.62 -39.75 16.42 15.28 0.25 -39.50 16 13 C 0.06 2.18 2.81 30.35 0.09 2.27 16 14 H 0.13 3.21 7.31 -2.39 -0.02 3.19 16 15 C -0.14 -3.12 5.39 31.61 0.17 -2.95 16 16 C -0.13 -2.11 5.54 31.61 0.18 -1.93 16 17 C 0.05 1.11 2.77 30.35 0.08 1.19 16 18 H 0.14 1.98 7.55 -2.39 -0.02 1.96 16 19 C 0.51 14.70 7.03 87.66 0.62 15.31 16 20 O -0.58 -24.23 16.02 15.35 0.25 -23.98 16 21 N -0.61 -11.30 3.01 -816.47 -2.46 -13.76 16 22 C 0.06 0.49 5.88 86.50 0.51 1.00 16 23 C 0.04 0.31 7.00 72.22 0.51 0.81 16 24 O -0.39 -5.11 10.74 -148.98 -1.60 -6.71 16 25 C 0.06 0.73 6.99 72.09 0.50 1.23 16 26 C 0.07 1.27 6.64 86.37 0.57 1.84 16 27 O -0.37 -14.56 10.17 -121.26 -1.23 -15.79 16 28 H 0.09 2.31 7.64 -2.39 -0.02 2.29 16 29 H 0.06 2.05 3.42 -2.38 -0.01 2.04 16 30 H 0.10 2.37 6.40 -2.39 -0.02 2.36 16 31 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.05 1.61 7.86 -2.39 -0.02 1.60 16 33 H 0.14 1.72 7.29 -2.39 -0.02 1.71 16 34 H 0.07 1.33 7.86 -2.39 -0.02 1.31 16 35 H 0.15 0.60 6.91 -2.39 -0.02 0.58 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.35 4.70 -2.38 -0.01 0.34 16 38 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.78 7.08 -2.38 -0.02 1.77 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -102.16 337.18 2.55 -99.61 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.99 Total: 11.57 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 6.05 Total: 25.54 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -3.86 Total: -93.32 kcal Atomic # 8 Polarization: -83.65 SS G_CDS: -2.34 Total: -85.99 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.71 Total: 42.59 kcal Total: -102.16 2.55 -99.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408356084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.820 kcal (2) G-P(sol) polarization free energy of solvation -102.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds