Wall clock time and date at job start Fri Apr 10 2020 18:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47309 * 126.68818 * 2 1 4 4 C 1.51585 * 103.59064 * 180.02562 * 3 2 1 5 5 O 1.21234 * 127.15504 * 180.02562 * 4 3 2 6 6 N 1.34763 * 105.68455 * 359.97438 * 4 3 2 7 7 C 1.46506 * 124.17431 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46967 * 90.02896 * 7 6 4 9 9 C 1.52996 * 109.47188 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47076 * 179.97438 * 9 8 7 11 11 O 1.20820 * 120.00127 * 0.02562 * 10 9 8 12 12 O 1.34232 * 119.99855 * 179.97438 * 10 9 8 13 13 C 1.45202 * 116.99800 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46710 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46634 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46930 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99911 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00247 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99805 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00206 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47236 * 60.00092 * 20 18 16 22 22 H 1.48502 * 109.46864 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47185 * 299.99666 * 20 18 16 24 24 C 1.33784 * 111.64787 * 0.23042 * 6 4 3 25 25 O 1.21539 * 123.77572 * 179.76923 * 24 6 4 26 26 H 1.08997 * 109.47182 * 90.00246 * 1 2 3 27 27 H 1.09005 * 109.47073 * 210.00531 * 1 2 3 28 28 H 1.08999 * 109.47477 * 329.99687 * 1 2 3 29 29 H 1.09003 * 110.59923 * 61.50601 * 3 2 1 30 30 H 1.09001 * 110.59956 * 298.56121 * 3 2 1 31 31 H 1.08994 * 109.46947 * 210.02315 * 7 6 4 32 32 H 1.08997 * 109.47271 * 330.02831 * 7 6 4 33 33 H 1.09011 * 109.46854 * 299.99834 * 8 7 6 34 34 H 1.09005 * 109.47366 * 59.99260 * 8 7 6 35 35 H 1.08994 * 109.46779 * 299.99451 * 9 8 7 36 36 H 1.08997 * 109.47218 * 59.99832 * 9 8 7 37 37 H 1.08996 * 109.46993 * 299.99816 * 13 12 10 38 38 H 1.09001 * 109.46731 * 60.00601 * 13 12 10 39 39 H 1.08996 * 109.47264 * 299.99676 * 14 13 12 40 40 H 1.09001 * 109.47011 * 60.00799 * 14 13 12 41 41 H 1.09001 * 109.47536 * 299.99994 * 15 14 13 42 42 H 1.09001 * 109.46714 * 60.00684 * 15 14 13 43 43 H 0.97001 * 119.99837 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5866 -0.0007 5 8 4.7921 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0004 7 6 4.6614 -1.7222 -0.0014 8 6 5.0437 -2.0611 1.4408 9 6 6.1885 -3.0762 1.4398 10 6 6.5655 -3.4095 2.8603 11 8 5.9785 -2.8890 3.7792 12 8 7.5528 -4.2855 3.1048 13 6 7.8616 -4.5590 4.4969 14 6 9.0041 -5.5736 4.5760 15 6 9.3299 -5.8614 6.0429 16 6 10.4557 -6.8603 6.1209 17 1 10.8951 -7.2504 5.2147 18 6 10.9246 -7.2761 7.3489 19 7 10.3892 -6.8013 8.4524 20 14 12.3206 -8.5137 7.4454 21 1 13.5219 -7.9584 6.7719 22 1 12.6359 -8.7940 8.8693 23 1 11.9131 -9.7729 6.7720 24 6 2.2689 -1.0787 -0.0046 25 8 1.8623 -2.2241 -0.0093 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 2.1839 1.7796 0.8967 30 1 2.1831 1.7802 -0.8962 31 1 4.3420 -2.6289 -0.5151 32 1 5.5235 -1.2976 -0.5156 33 1 5.3631 -1.1543 1.9547 34 1 4.1815 -2.4857 1.9551 35 1 5.8696 -3.9829 0.9259 36 1 7.0505 -2.6512 0.9257 37 1 8.1611 -3.6348 4.9911 38 1 6.9797 -4.9663 4.9914 39 1 8.7042 -6.4978 4.0820 40 1 9.8862 -5.1668 4.0814 41 1 9.6300 -4.9371 6.5367 42 1 8.4480 -6.2681 6.5379 43 1 10.7194 -7.0936 9.3163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733866526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:33 Heat of formation + Delta-G solvation = -143.116928 kcal Electronic energy + Delta-G solvation = -24736.530606 eV Core-core repulsion = 20782.604475 eV Total energy + Delta-G solvation = -3953.926131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.77028 -40.24724 -39.05309 -36.93367 -36.59587 -36.12253 -33.98890 -33.69780 -31.69547 -30.10125 -28.00014 -27.05568 -26.48150 -23.76357 -22.93928 -22.59074 -20.58543 -20.55410 -20.21094 -18.04565 -17.74836 -17.30482 -17.14834 -16.62344 -16.48441 -16.04789 -15.66199 -15.32086 -15.16200 -14.93520 -14.59156 -14.46917 -14.41758 -13.91945 -13.28972 -13.14350 -12.99428 -12.91804 -12.63402 -12.25680 -12.10087 -11.96536 -11.78923 -11.29629 -11.19486 -10.94378 -10.68550 -10.67964 -10.62216 -10.38085 -10.36545 -10.23152 -9.70887 -9.55964 -9.48681 -9.16693 -8.37634 -6.02502 -4.05691 1.16382 1.56769 2.35523 2.41474 2.53500 2.92272 3.33268 3.37456 3.40129 3.50729 4.12413 4.41287 4.43426 4.48836 4.50281 4.55872 4.59269 4.86065 4.90855 4.98662 5.02473 5.10802 5.24109 5.30750 5.33252 5.34534 5.58965 5.64743 5.66251 5.86050 5.89301 6.02907 6.52501 6.55240 6.61970 6.86505 6.87969 6.99840 7.60223 7.60906 7.72201 7.93941 7.96033 8.36812 9.00311 9.58480 11.08886 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.001747 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.213179 B =16024.680295 C =16182.618615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.632 5.632 3 C 0.063 3.937 4 C 0.521 3.479 5 O -0.465 6.465 6 N -0.576 5.576 7 C 0.119 3.881 8 C -0.126 4.126 9 C -0.110 4.110 10 C 0.457 3.543 11 O -0.513 6.513 12 O -0.358 6.358 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.698 3.302 25 O -0.537 6.537 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.258 17.844 -21.946 34.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.372 5.372 3 C -0.063 4.063 4 C 0.308 3.692 5 O -0.335 6.335 6 N -0.321 5.321 7 C -0.001 4.001 8 C -0.165 4.165 9 C -0.149 4.149 10 C 0.300 3.700 11 O -0.402 6.402 12 O -0.275 6.275 13 C -0.005 4.005 14 C -0.147 4.147 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.400 3.600 25 O -0.410 6.410 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.136 17.620 -21.442 34.288 hybrid contribution 0.704 -0.569 0.395 0.988 sum -19.432 17.051 -21.047 33.336 Atomic orbital electron populations 1.21539 0.73913 1.04026 1.02550 1.47494 1.06796 1.05309 1.77559 1.22525 0.86693 0.90417 1.06687 1.20884 0.91466 0.82240 0.74591 1.90853 1.30862 1.66071 1.45682 1.46395 1.08115 1.09298 1.68313 1.21717 0.87872 0.92236 0.98307 1.21749 0.98762 0.99989 0.95958 1.21207 1.00224 1.01613 0.91812 1.23477 0.77588 0.76561 0.92367 1.90664 1.51933 1.50590 1.47025 1.86493 1.50359 1.57314 1.33326 1.23504 0.99868 1.00338 0.76779 1.21766 0.94731 0.96268 1.01902 1.19054 0.96972 0.97130 0.88191 1.21138 1.17726 1.24835 0.92346 0.92462 1.25035 0.97038 0.96642 0.95778 1.69961 1.42036 1.43859 0.97510 0.86594 0.82461 0.81648 0.76920 1.20179 1.21267 1.20187 1.15885 0.80763 0.85443 0.77909 1.91008 1.76772 1.18648 1.54567 0.91917 0.89806 0.90099 0.85865 0.85958 0.88064 0.88236 0.90287 0.90039 0.87227 0.87298 0.91539 0.91540 0.92126 0.92137 0.96241 0.96236 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.36 11.17 59.85 0.67 1.03 16 2 N -0.63 -3.60 3.42 -187.94 -0.64 -4.24 16 3 C 0.06 0.23 7.66 -4.32 -0.03 0.20 16 4 C 0.52 3.92 8.31 -10.56 -0.09 3.83 16 5 O -0.47 -4.85 17.76 5.60 0.10 -4.75 16 6 N -0.58 -4.80 2.60 -120.73 -0.31 -5.11 16 7 C 0.12 0.91 5.70 -4.04 -0.02 0.89 16 8 C -0.13 -1.22 4.83 -26.73 -0.13 -1.35 16 9 C -0.11 -1.05 5.81 -27.88 -0.16 -1.21 16 10 C 0.46 6.85 7.96 36.01 0.29 7.14 16 11 O -0.51 -9.29 15.73 -18.75 -0.29 -9.58 16 12 O -0.36 -6.02 10.22 -39.26 -0.40 -6.43 16 13 C 0.07 1.29 5.47 37.16 0.20 1.49 16 14 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.70 6.43 8.31 -88.02 -0.73 5.70 16 25 O -0.54 -6.81 17.15 5.33 0.09 -6.72 16 26 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.08 0.35 8.04 -51.93 -0.42 -0.06 16 28 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.10 0.70 7.85 -51.93 -0.41 0.30 16 32 H 0.10 0.62 8.00 -51.93 -0.42 0.21 16 33 H 0.08 0.87 8.10 -51.92 -0.42 0.45 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 38 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -37.14 375.16 -7.49 -44.63 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -6.70 Total: -5.93 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.71 Total: 2.09 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.22 Total: -35.67 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.51 Total: -27.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.14 -7.49 -44.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.487 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds