Wall clock time and date at job start Fri Apr 10 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47086 * 2 1 4 4 N 1.46500 * 109.47059 * 120.00073 * 2 1 3 5 5 C 1.34775 * 120.00161 * 275.00068 * 4 2 1 6 6 O 1.21284 * 119.99766 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00014 * 180.02562 * 5 4 2 8 8 C 1.54272 * 110.03190 * 297.90175 * 7 5 4 9 9 C 1.54962 * 104.16176 * 217.14160 * 8 7 5 10 10 C 1.54891 * 102.77762 * 37.88716 * 9 8 7 11 11 C 1.53875 * 110.03379 * 180.69129 * 7 5 4 12 12 C 1.50701 * 109.47204 * 239.99793 * 2 1 3 13 13 O 1.21287 * 120.00269 * 264.52339 * 12 2 1 14 14 N 1.34785 * 119.99563 * 84.52007 * 12 2 1 15 15 C 1.37095 * 119.99759 * 184.73139 * 14 12 2 16 16 H 1.07996 * 120.00305 * 130.81906 * 15 14 12 17 17 C 1.38948 * 120.00016 * 311.09681 * 15 14 12 18 18 N 1.31418 * 120.00418 * 159.38054 * 17 15 14 19 19 Si 1.86801 * 120.00094 * 339.37962 * 17 15 14 20 20 H 1.48501 * 109.47215 * 89.41950 * 19 17 15 21 21 H 1.48505 * 109.47135 * 209.41857 * 19 17 15 22 22 H 1.48498 * 109.47319 * 329.41679 * 19 17 15 23 23 C 1.46497 * 120.00039 * 4.73690 * 14 12 2 24 24 C 1.50708 * 109.46595 * 266.84617 * 23 14 12 25 25 O 1.20815 * 120.00114 * 354.40760 * 24 23 14 26 26 O 1.34231 * 119.99479 * 174.40712 * 24 23 14 27 27 H 1.08994 * 109.47236 * 302.02760 * 1 2 3 28 28 H 1.09003 * 109.47275 * 62.02987 * 1 2 3 29 29 H 1.09002 * 109.47029 * 182.02682 * 1 2 3 30 30 H 0.96996 * 119.99786 * 95.00136 * 4 2 1 31 31 H 1.08997 * 110.02238 * 59.29612 * 7 5 4 32 32 H 1.08999 * 110.48721 * 335.78969 * 8 7 5 33 33 H 1.09003 * 110.48495 * 98.42624 * 8 7 5 34 34 H 1.09001 * 110.71477 * 279.57371 * 9 8 7 35 35 H 1.09003 * 110.92374 * 156.29946 * 9 8 7 36 36 H 1.09007 * 110.48221 * 203.40291 * 10 9 8 37 37 H 1.08996 * 110.59472 * 80.82079 * 10 9 8 38 38 H 1.08998 * 110.03672 * 238.57168 * 11 7 5 39 39 H 1.09004 * 110.03276 * 359.97438 * 11 7 5 40 40 H 0.96995 * 120.00489 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.47305 * 26.84591 * 23 14 12 42 42 H 1.08998 * 109.47166 * 146.85374 * 23 14 12 43 43 H 0.96703 * 116.99975 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6499 -0.7286 3.5874 8 6 1.6792 -1.8628 3.9766 9 6 1.6761 -1.8441 5.5261 10 6 1.7422 -0.3310 5.8506 11 6 2.6903 0.2447 4.7785 12 6 2.0323 -0.7105 -1.2304 13 8 2.3290 -1.8851 -1.1739 14 7 2.1519 -0.0404 -2.3938 15 6 2.5156 -0.7077 -3.5349 16 1 1.9464 -0.5747 -4.4429 17 6 3.6132 -1.5596 -3.5215 18 7 3.7345 -2.4895 -4.4421 19 14 4.9165 -1.3831 -2.1950 20 1 4.5493 -2.2215 -1.0256 21 1 6.2295 -1.8261 -2.7289 22 1 5.0069 0.0386 -1.7758 23 6 1.8932 1.4008 -2.4389 24 6 0.4544 1.6413 -2.8177 25 8 -0.2524 0.7114 -3.1264 26 8 -0.0416 2.8886 -2.8119 27 1 -0.3633 0.5450 0.8712 28 1 -0.3634 0.4820 -0.9076 29 1 -0.3633 -1.0270 0.0363 30 1 2.2490 -1.6317 1.1526 31 1 3.6444 -1.1350 3.4034 32 1 0.6803 -1.6592 3.5908 33 1 2.0441 -2.8209 3.6065 34 1 2.5507 -2.3621 5.9197 35 1 0.7593 -2.2838 5.9189 36 1 2.1527 -0.1723 6.8479 37 1 0.7542 0.1221 5.7692 38 1 3.7043 0.3102 5.1730 39 1 2.3466 1.2310 4.4666 40 1 4.5009 -3.0840 -4.4331 41 1 2.0885 1.8359 -1.4589 42 1 2.5459 1.8641 -3.1788 43 1 -0.9697 2.9931 -3.0625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736630805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:37 Heat of formation + Delta-G solvation = -154.794949 kcal Electronic energy + Delta-G solvation = -27537.719282 eV Core-core repulsion = 23583.286754 eV Total energy + Delta-G solvation = -3954.432528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.48015 -39.88670 -38.79185 -37.10999 -35.82183 -34.94230 -34.40376 -32.27246 -30.90509 -28.90857 -28.66544 -28.08350 -25.46096 -23.48053 -21.95027 -21.38349 -20.79350 -19.64497 -19.29650 -17.98537 -17.67798 -17.06965 -16.40238 -16.15393 -15.71277 -15.61639 -15.35087 -14.89452 -14.79730 -14.58472 -13.94890 -13.59922 -13.39497 -13.20101 -13.03547 -12.74904 -12.37570 -12.31278 -11.95577 -11.87179 -11.74925 -11.44284 -11.26749 -11.25928 -11.21863 -11.08274 -10.91648 -10.90220 -10.63408 -10.49245 -10.19215 -10.08599 -9.64377 -9.05646 -8.72582 -8.64468 -7.84845 -6.32280 -4.15102 2.61597 2.73469 3.03217 3.18355 3.32194 3.32938 3.46885 3.78007 4.20635 4.34919 4.38851 4.46514 4.64634 4.92966 5.02987 5.16868 5.23793 5.26366 5.30354 5.37830 5.46006 5.49546 5.51283 5.54027 5.70932 5.71629 5.77074 5.82684 5.87619 5.94088 6.01739 6.03436 6.15373 6.24181 6.37614 6.59014 6.81198 7.67455 7.71037 7.82409 8.28806 8.34888 8.58851 8.69522 9.26332 9.54256 10.74477 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.004970 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.783625 B = 5632.369476 C = 6915.291930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.118 3.882 3 H 0.099 0.901 4 N -0.708 5.708 5 C 0.520 3.480 6 O -0.546 6.546 7 C -0.114 4.114 8 C -0.116 4.116 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.118 4.118 12 C 0.461 3.539 13 O -0.527 6.527 14 N -0.443 5.443 15 C -0.351 4.351 16 H 0.096 0.904 17 C 0.101 3.899 18 N -0.856 5.856 19 Si 0.889 3.111 20 H -0.254 1.254 21 H -0.296 1.296 22 H -0.276 1.276 23 C 0.105 3.895 24 C 0.453 3.547 25 O -0.490 6.490 26 O -0.525 6.525 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.410 0.590 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.274 0.726 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 6.642 15.598 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 H 0.117 0.883 4 N -0.361 5.361 5 C 0.306 3.694 6 O -0.424 6.424 7 C -0.136 4.136 8 C -0.154 4.154 9 C -0.161 4.161 10 C -0.161 4.161 11 C -0.156 4.156 12 C 0.250 3.750 13 O -0.406 6.406 14 N -0.166 5.166 15 C -0.476 4.476 16 H 0.113 0.887 17 C -0.110 4.110 18 N -0.489 5.489 19 Si 0.717 3.283 20 H -0.179 1.179 21 H -0.224 1.224 22 H -0.201 1.201 23 C -0.021 4.021 24 C 0.293 3.707 25 O -0.375 6.375 26 O -0.337 6.337 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.247 0.753 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.987 6.374 15.548 17.067 hybrid contribution 0.137 -0.333 0.122 0.381 sum -2.850 6.041 15.670 17.034 Atomic orbital electron populations 1.22056 0.93097 1.03252 1.02688 1.20981 0.95762 0.97504 0.84780 0.88350 1.45899 1.66584 1.15010 1.08621 1.20580 0.77228 0.87177 0.84393 1.90631 1.50890 1.16048 1.84847 1.21953 1.01002 0.97123 0.93485 1.22384 0.99266 0.97385 0.96391 1.22507 1.01855 0.96618 0.95083 1.22357 0.99932 0.95382 0.98432 1.22157 0.99958 1.00137 0.93342 1.20426 0.81759 0.87675 0.85176 1.90591 1.50526 1.15678 1.83800 1.43210 1.61065 1.03651 1.08702 1.18775 1.13133 1.26591 0.89144 0.88652 1.25285 0.96917 0.93176 0.95604 1.69761 1.29218 1.14786 1.35146 0.86752 0.79296 0.78863 0.83386 1.17896 1.22359 1.20084 1.21309 0.89161 0.87286 1.04374 1.24611 0.92106 0.79869 0.74157 1.90751 1.60185 1.43849 1.42726 1.84571 1.33882 1.32892 1.82339 0.91729 0.91110 0.91643 0.75296 0.88350 0.90986 0.90655 0.91307 0.91388 0.91657 0.91564 0.91549 0.89120 0.91592 0.87938 0.85812 0.74024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.47 37.16 0.35 -2.23 16 2 C 0.12 2.18 2.34 -69.08 -0.16 2.02 16 3 H 0.10 1.74 5.41 -51.93 -0.28 1.46 16 4 N -0.71 -11.84 4.99 -54.93 -0.27 -12.12 16 5 C 0.52 8.02 6.96 -10.99 -0.08 7.94 16 6 O -0.55 -9.72 14.87 5.55 0.08 -9.64 16 7 C -0.11 -1.35 3.30 -90.65 -0.30 -1.65 16 8 C -0.12 -1.19 6.30 -25.03 -0.16 -1.34 16 9 C -0.12 -1.05 6.91 -24.70 -0.17 -1.22 16 10 C -0.12 -1.12 6.83 -25.08 -0.17 -1.29 16 11 C -0.12 -1.28 6.40 -25.62 -0.16 -1.44 16 12 C 0.46 10.55 5.34 -10.98 -0.06 10.50 16 13 O -0.53 -13.74 12.15 5.55 0.07 -13.68 16 14 N -0.44 -10.29 1.55 -116.10 -0.18 -10.47 16 15 C -0.35 -9.66 9.44 -14.93 -0.14 -9.80 16 16 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16 17 C 0.10 2.86 4.80 -17.47 -0.08 2.78 16 18 N -0.86 -25.48 13.96 55.50 0.77 -24.70 16 19 Si 0.89 22.34 25.48 -169.99 -4.33 18.01 16 20 H -0.25 -6.53 6.32 56.52 0.36 -6.18 16 21 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 C 0.10 1.87 5.80 -5.19 -0.03 1.84 16 24 C 0.45 7.78 6.84 36.01 0.25 8.03 16 25 O -0.49 -10.29 15.84 -18.74 -0.30 -10.58 16 26 O -0.53 -6.76 13.42 -39.26 -0.53 -7.29 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.23 4.92 -51.93 -0.26 0.98 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.41 6.79 7.76 -40.82 -0.32 6.48 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.17 6.39 -51.93 -0.33 0.84 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.10 1.56 5.80 -51.93 -0.30 1.25 16 42 H 0.12 2.01 8.07 -51.93 -0.42 1.59 16 43 H 0.40 3.46 9.10 45.56 0.41 3.87 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -35.21 348.47 -5.65 -40.86 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.30 Total: 10.22 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -0.92 Total: 14.13 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.32 Total: -47.29 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.67 Total: -41.18 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.33 Total: 18.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.21 -5.65 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736630805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.930 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds