Wall clock time and date at job start Fri Apr 10 2020 18:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47211 * 2 1 4 4 N 1.46499 * 109.47385 * 239.99811 * 2 1 3 5 5 C 1.34770 * 120.00229 * 84.99922 * 4 2 1 6 6 O 1.21286 * 120.00160 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00377 * 179.97438 * 5 4 2 8 8 C 1.55234 * 110.58202 * 294.87946 * 7 5 4 9 9 C 1.54894 * 102.58661 * 203.33752 * 8 7 5 10 10 C 1.54269 * 104.31395 * 37.92557 * 9 8 7 11 11 C 1.53870 * 106.59875 * 336.32723 * 10 9 8 12 12 C 1.50697 * 109.47104 * 119.99615 * 2 1 3 13 13 O 1.21292 * 119.99973 * 87.27081 * 12 2 1 14 14 N 1.34776 * 120.00107 * 267.27275 * 12 2 1 15 15 C 1.37097 * 120.00205 * 184.43962 * 14 12 2 16 16 H 1.07996 * 120.00006 * 350.09544 * 15 14 12 17 17 C 1.38951 * 120.00160 * 170.10374 * 15 14 12 18 18 N 1.31413 * 119.99871 * 335.87159 * 17 15 14 19 19 Si 1.86800 * 119.99972 * 155.86810 * 17 15 14 20 20 H 1.48490 * 109.47363 * 90.00224 * 19 17 15 21 21 H 1.48507 * 109.47219 * 210.00194 * 19 17 15 22 22 H 1.48498 * 109.47118 * 329.99638 * 19 17 15 23 23 C 1.46508 * 120.00099 * 4.43729 * 14 12 2 24 24 C 1.50691 * 109.46818 * 267.19363 * 23 14 12 25 25 O 1.20831 * 120.00544 * 359.97438 * 24 23 14 26 26 O 1.34232 * 119.99917 * 179.97438 * 24 23 14 27 27 H 1.08997 * 109.47605 * 302.82658 * 1 2 3 28 28 H 1.09001 * 109.47107 * 62.83055 * 1 2 3 29 29 H 1.09007 * 109.46651 * 182.82157 * 1 2 3 30 30 H 0.97005 * 119.99758 * 265.00007 * 4 2 1 31 31 H 1.09006 * 110.42827 * 57.46276 * 7 5 4 32 32 H 1.08997 * 110.90196 * 85.04333 * 8 7 5 33 33 H 1.08997 * 110.76481 * 321.56188 * 8 7 5 34 34 H 1.09004 * 110.48404 * 279.18240 * 9 8 7 35 35 H 1.08997 * 110.48625 * 156.67411 * 9 8 7 36 36 H 1.09002 * 110.02888 * 95.61079 * 10 9 8 37 37 H 1.08999 * 110.03289 * 216.99277 * 10 9 8 38 38 H 1.09004 * 110.03013 * 119.28441 * 11 10 9 39 39 H 1.09005 * 110.03195 * 240.66071 * 11 10 9 40 40 H 0.96998 * 119.99772 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.46483 * 27.18997 * 23 14 12 42 42 H 1.08993 * 109.47057 * 147.18984 * 23 14 12 43 43 H 0.96704 * 117.00566 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8591 1.1585 -2.4116 7 6 2.6500 -0.7287 -3.5874 8 6 4.1206 -1.1855 -3.3909 9 6 4.6332 -1.3085 -4.8474 10 6 3.9720 -0.1262 -5.5856 11 6 2.7111 0.2424 -4.7845 12 6 2.0323 -0.7103 1.2305 13 8 2.1873 -1.9132 1.2156 14 7 2.3093 -0.0090 2.3476 15 6 2.8519 -0.6407 3.4367 16 1 2.9097 -1.7188 3.4623 17 6 3.3272 0.1062 4.5076 18 7 3.7026 1.3522 4.3246 19 14 3.4325 -0.6608 6.2076 20 1 4.7627 -1.2971 6.3821 21 1 3.2485 0.3925 7.2383 22 1 2.3696 -1.6875 6.3541 23 6 2.0306 1.4284 2.3981 24 6 3.2624 2.1935 1.9880 25 8 4.2699 1.5993 1.6851 26 8 3.2404 3.5354 1.9592 27 1 -0.3634 0.5571 0.8635 28 1 -0.3633 0.4693 -0.9143 29 1 -0.3633 -1.0265 0.0506 30 1 2.2491 -1.6318 -1.1525 31 1 2.0136 -1.5823 -3.8208 32 1 4.1640 -2.1491 -2.8835 33 1 4.6890 -0.4335 -2.8437 34 1 4.3172 -2.2558 -5.2843 35 1 5.7190 -1.2185 -4.8785 36 1 4.6551 0.7226 -5.6182 37 1 3.6984 -0.4240 -6.5978 38 1 2.7823 1.2702 -4.4283 39 1 1.8248 0.1242 -5.4079 40 1 4.0347 1.8734 5.0721 41 1 1.2129 1.6641 1.7169 42 1 1.7500 1.7087 3.4133 43 1 4.0547 3.9822 1.6900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736630806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:40 Heat of formation + Delta-G solvation = -186.200000 kcal Electronic energy + Delta-G solvation = -27513.226567 eV Core-core repulsion = 23557.432214 eV Total energy + Delta-G solvation = -3955.794353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69571 -40.93784 -40.01008 -38.12021 -37.17334 -36.39617 -35.89842 -33.89246 -32.09871 -29.83875 -29.58823 -29.47489 -27.28293 -25.14951 -23.08497 -22.70729 -21.40995 -20.98282 -20.55415 -19.11008 -18.89879 -18.63482 -17.76524 -17.48479 -17.13001 -16.68229 -16.39210 -16.21158 -16.00318 -15.85231 -15.47274 -15.16933 -14.53914 -14.44596 -14.30354 -13.83745 -13.58432 -13.50062 -13.45235 -13.16301 -12.94530 -12.73694 -12.61332 -12.42934 -12.20496 -12.16410 -12.09517 -12.06684 -11.99755 -11.72698 -11.52072 -11.28581 -11.00543 -10.84972 -10.61907 -10.18501 -9.96832 -8.51175 -5.97550 1.28275 1.42514 1.52659 1.56070 1.64939 1.79638 2.12356 2.25499 2.49105 2.81969 3.09223 3.48130 3.56841 3.63817 3.80429 3.97811 4.11117 4.15705 4.25379 4.46233 4.50413 4.57333 4.58657 4.62140 4.67424 4.75825 4.78925 4.86391 4.93567 5.09717 5.11139 5.19197 5.25550 5.29093 5.40855 5.42132 5.48916 5.88325 5.95660 6.27646 6.48992 6.99991 7.14454 7.23136 7.43239 7.77237 8.55708 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.004021 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.436179 B = 6961.107032 C = 7230.532095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.078 0.922 4 N -0.705 5.705 5 C 0.517 3.483 6 O -0.578 6.578 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.111 4.111 12 C 0.445 3.555 13 O -0.607 6.607 14 N -0.432 5.432 15 C -0.343 4.343 16 H 0.087 0.913 17 C 0.003 3.997 18 N -0.887 5.887 19 Si 0.995 3.005 20 H -0.283 1.283 21 H -0.266 1.266 22 H -0.265 1.265 23 C 0.141 3.859 24 C 0.500 3.500 25 O -0.549 6.549 26 O -0.521 6.521 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.411 0.589 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.277 0.723 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 0.300 -13.043 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 H 0.096 0.904 4 N -0.357 5.357 5 C 0.305 3.695 6 O -0.458 6.458 7 C -0.128 4.128 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.149 4.149 12 C 0.234 3.766 13 O -0.493 6.493 14 N -0.150 5.150 15 C -0.470 4.470 16 H 0.105 0.895 17 C -0.199 4.199 18 N -0.526 5.526 19 Si 0.818 3.182 20 H -0.209 1.209 21 H -0.191 1.191 22 H -0.189 1.189 23 C 0.016 3.984 24 C 0.342 3.658 25 O -0.438 6.438 26 O -0.333 6.333 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.248 0.752 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.007 0.359 -12.897 13.510 hybrid contribution 1.235 -0.107 1.146 1.688 sum -2.772 0.252 -11.751 12.076 Atomic orbital electron populations 1.22046 0.91038 1.03570 1.03828 1.20637 0.97020 0.95973 0.83709 0.90426 1.45848 1.66708 1.14823 1.08366 1.21276 0.76182 0.86980 0.85067 1.90632 1.52048 1.17480 1.85636 1.22318 0.98836 1.00161 0.91518 1.22585 0.92822 1.01261 0.99048 1.22347 1.00556 0.99473 0.92955 1.22145 0.95836 0.98234 0.99601 1.22070 0.99614 0.98578 0.94632 1.20539 0.83780 0.87885 0.84410 1.90474 1.59638 1.15599 1.83634 1.43581 1.53239 1.05947 1.12271 1.19664 1.40391 0.93032 0.93949 0.89515 1.25968 0.94324 0.96285 1.03322 1.69741 1.39135 1.10852 1.32878 0.84930 0.78423 0.78252 0.76625 1.20917 1.19062 1.18948 1.20954 0.92048 0.80313 1.05125 1.23612 0.90889 0.80347 0.70964 1.90581 1.35278 1.70600 1.47341 1.84431 1.45292 1.21333 1.82242 0.89868 0.90473 0.91312 0.75218 0.85433 0.90013 0.93607 0.89350 0.90923 0.92189 0.89554 0.92569 0.90027 0.91250 0.86786 0.86039 0.72945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.33 71.98 0.67 -3.85 16 2 C 0.14 5.25 2.13 44.24 0.09 5.34 16 3 H 0.08 3.23 5.66 -2.39 -0.01 3.22 16 4 N -0.71 -24.62 5.05 -446.11 -2.25 -26.87 16 5 C 0.52 16.93 7.10 87.66 0.62 17.55 16 6 O -0.58 -22.49 15.09 -3.05 -0.05 -22.53 16 7 C -0.11 -2.53 3.25 -10.34 -0.03 -2.56 16 8 C -0.12 -2.73 6.34 32.01 0.20 -2.53 16 9 C -0.12 -1.95 6.82 31.67 0.22 -1.73 16 10 C -0.12 -2.06 6.80 31.32 0.21 -1.84 16 11 C -0.11 -2.41 6.18 31.32 0.19 -2.22 16 12 C 0.44 21.26 6.77 87.66 0.59 21.85 16 13 O -0.61 -32.17 15.76 -3.07 -0.05 -32.22 16 14 N -0.43 -21.68 2.12 -639.61 -1.36 -23.04 16 15 C -0.34 -18.87 9.39 84.04 0.79 -18.08 16 16 H 0.09 5.08 7.30 -2.91 -0.02 5.06 16 17 C 0.00 0.15 4.91 84.93 0.42 0.57 16 18 N -0.89 -45.40 8.57 21.66 0.19 -45.21 16 19 Si 0.99 41.02 29.62 68.60 2.03 43.05 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 C 0.14 6.14 4.87 85.63 0.42 6.55 16 24 C 0.50 22.91 5.68 71.23 0.40 23.31 16 25 O -0.55 -29.93 16.58 21.95 0.36 -29.57 16 26 O -0.52 -19.22 13.42 -51.43 -0.69 -19.91 16 27 H 0.08 2.32 7.27 -2.39 -0.02 2.30 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.41 13.83 7.89 -92.70 -0.73 13.09 16 31 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.30 8.06 -2.39 -0.02 1.28 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.55 6.85 -2.38 -0.02 1.54 16 39 H 0.08 1.49 8.14 -2.38 -0.02 1.48 16 40 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 41 H 0.11 4.06 5.56 -2.39 -0.01 4.05 16 42 H 0.12 5.34 6.58 -2.39 -0.02 5.33 16 43 H 0.41 11.87 9.10 -74.05 -0.67 11.19 16 Total: -1.00 -73.51 352.96 2.64 -70.87 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: -0.35 Total: 43.07 kcal Atomic # 6 Polarization: 37.56 SS G_CDS: 4.80 Total: 42.36 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -3.43 Total: -95.12 kcal Atomic # 8 Polarization: -103.81 SS G_CDS: -0.42 Total: -104.23 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -73.51 2.64 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736630806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.333 kcal (2) G-P(sol) polarization free energy of solvation -73.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds