Wall clock time and date at job start Fri Apr 10 2020 18:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47405 * 2 1 4 4 O 1.21287 * 119.99849 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00198 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.62614 * 359.71301 * 5 3 2 7 7 C 1.52764 * 109.00879 * 233.58413 * 6 5 3 8 8 C 1.53039 * 109.38833 * 305.59435 * 7 6 5 9 9 C 1.53043 * 109.53578 * 61.23404 * 8 7 6 10 10 H 1.08998 * 109.52125 * 58.60602 * 9 8 7 11 11 C 1.50697 * 109.49630 * 178.68596 * 9 8 7 12 12 O 1.21299 * 119.99699 * 24.84462 * 11 9 8 13 13 N 1.34779 * 120.00129 * 204.84924 * 11 9 8 14 14 C 1.37087 * 120.00075 * 4.21792 * 13 11 9 15 15 H 1.08010 * 120.00165 * 322.77347 * 14 13 11 16 16 C 1.38952 * 120.00162 * 142.77346 * 14 13 11 17 17 N 1.31411 * 120.00075 * 156.99114 * 16 14 13 18 18 Si 1.86792 * 119.99954 * 336.98772 * 16 14 13 19 19 H 1.48498 * 109.47016 * 91.22488 * 18 16 14 20 20 H 1.48502 * 109.47562 * 211.22559 * 18 16 14 21 21 H 1.48500 * 109.47183 * 331.22719 * 18 16 14 22 22 C 1.46506 * 119.99678 * 184.22122 * 13 11 9 23 23 C 1.50696 * 109.46924 * 84.03569 * 22 13 11 24 24 O 1.20824 * 120.00497 * 359.97438 * 23 22 13 25 25 O 1.34233 * 119.99724 * 179.97438 * 23 22 13 26 26 C 1.46920 * 120.63468 * 180.02562 * 5 3 2 27 27 H 1.09005 * 109.46730 * 300.00118 * 1 2 3 28 28 H 1.09002 * 109.47087 * 59.99988 * 1 2 3 29 29 H 1.08993 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46730 * 239.99882 * 2 1 3 31 31 H 1.09002 * 109.47087 * 120.00012 * 2 1 3 32 32 H 1.08994 * 109.58787 * 353.42555 * 6 5 3 33 33 H 1.09001 * 109.58609 * 113.85182 * 6 5 3 34 34 H 1.08998 * 109.56544 * 185.55425 * 7 6 5 35 35 H 1.09003 * 109.38196 * 65.52159 * 7 6 5 36 36 H 1.08999 * 109.45763 * 301.22163 * 8 7 6 37 37 H 1.08994 * 109.45070 * 181.25251 * 8 7 6 38 38 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46463 * 204.03196 * 22 13 11 40 40 H 1.08992 * 109.46988 * 324.03061 * 22 13 11 41 41 H 0.96699 * 116.99965 * 179.97438 * 25 23 22 42 42 H 1.09001 * 109.58716 * 246.15356 * 26 5 3 43 43 H 1.09003 * 109.58406 * 6.43353 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3244 0.5607 0.0052 7 6 5.2968 0.7559 1.1671 8 6 5.9313 2.1452 1.0707 9 6 4.8400 3.2139 1.1670 10 1 4.3037 3.1029 2.1094 11 6 5.4689 4.5820 1.1044 12 8 6.5436 4.7311 0.5620 13 7 4.8374 5.6397 1.6512 14 6 3.6658 5.4579 2.3393 15 1 2.9471 4.7272 1.9984 16 6 3.4027 6.2136 3.4752 17 7 2.1631 6.3917 3.8734 18 14 4.8111 6.9764 4.4364 19 1 5.0775 8.3440 3.9226 20 1 4.4467 7.0500 5.8741 21 1 6.0288 6.1417 4.2764 22 6 5.4031 6.9837 1.5100 23 6 4.9792 7.5709 0.1885 24 8 4.2771 6.9321 -0.5591 25 8 5.3817 8.8036 -0.1583 26 6 3.8625 3.0466 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7967 -0.3852 0.1271 33 1 4.8780 0.5544 -0.9337 34 1 6.0768 -0.0042 1.1219 35 1 4.7567 0.6672 2.1097 36 1 6.4508 2.2418 0.1174 37 1 6.6419 2.2771 1.8866 38 1 1.9794 6.9196 4.6661 39 1 5.0427 7.6165 2.3210 40 1 6.4908 6.9262 1.5500 41 1 5.0847 9.1374 -1.0158 42 1 4.3775 3.2476 -0.9394 43 1 3.0299 3.7405 0.1159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736836827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:47 Heat of formation + Delta-G solvation = -153.539904 kcal Electronic energy + Delta-G solvation = -27768.622472 eV Core-core repulsion = 23814.244367 eV Total energy + Delta-G solvation = -3954.378105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25884 -39.69677 -38.64386 -36.83220 -35.56770 -34.89911 -33.06103 -32.25576 -32.05717 -31.06023 -28.19669 -25.76502 -25.14029 -24.03916 -22.87615 -21.76521 -20.53239 -18.98946 -18.59268 -17.62769 -17.43171 -16.85141 -16.48207 -15.86485 -15.53738 -15.50036 -15.25260 -14.91072 -14.45846 -14.16375 -13.84741 -13.55039 -13.44371 -12.99131 -12.81165 -12.75076 -12.52300 -12.41602 -12.26935 -11.92961 -11.75587 -11.65368 -11.20393 -11.10564 -11.02175 -10.97822 -10.75056 -10.63033 -10.46554 -10.15620 -10.09652 -9.97001 -9.53326 -9.32728 -8.74953 -8.33316 -8.02212 -6.56484 -4.17585 2.85437 2.88784 2.93231 3.07249 3.16658 3.18291 3.37127 3.76450 3.99680 4.26873 4.65033 4.82695 4.93179 5.05510 5.10132 5.15096 5.19162 5.44433 5.47658 5.57563 5.64815 5.69971 5.77642 5.82164 5.83835 5.90599 5.96860 5.99465 6.03634 6.16782 6.28878 6.29908 6.35024 6.60907 6.70017 6.81361 7.00668 7.10959 7.68167 7.93533 8.18889 8.48988 8.49559 8.81105 9.17041 9.47436 10.53402 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.005064 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.252631 B = 5528.234118 C = 5859.122009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.508 3.492 4 O -0.530 6.530 5 N -0.611 5.611 6 C 0.107 3.893 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.103 4.103 10 H 0.106 0.894 11 C 0.501 3.499 12 O -0.590 6.590 13 N -0.446 5.446 14 C -0.347 4.347 15 H 0.112 0.888 16 C 0.067 3.933 17 N -0.844 5.844 18 Si 0.860 3.140 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.256 1.256 22 C 0.104 3.896 23 C 0.465 3.535 24 O -0.498 6.498 25 O -0.527 6.527 26 C 0.130 3.870 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.277 0.723 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.400 0.600 42 H 0.064 0.936 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 -10.015 -4.319 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.181 4.181 3 C 0.296 3.704 4 O -0.406 6.406 5 N -0.346 5.346 6 C -0.016 4.016 7 C -0.173 4.173 8 C -0.139 4.139 9 C -0.125 4.125 10 H 0.124 0.876 11 C 0.291 3.709 12 O -0.474 6.474 13 N -0.167 5.167 14 C -0.474 4.474 15 H 0.129 0.871 16 C -0.141 4.141 17 N -0.477 5.477 18 Si 0.686 3.314 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.180 1.180 22 C -0.021 4.021 23 C 0.305 3.695 24 O -0.383 6.383 25 O -0.338 6.338 26 C 0.007 3.993 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.257 0.743 42 H 0.082 0.918 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.885 -9.698 -4.269 11.286 hybrid contribution 0.370 0.842 0.137 0.930 sum 4.255 -8.855 -4.132 10.658 Atomic orbital electron populations 1.21538 0.93205 1.01155 1.03597 1.21639 0.98469 0.94260 1.03749 1.20748 0.81756 0.91768 0.76176 1.90758 1.54567 1.46424 1.48808 1.48146 1.05485 1.07306 1.73614 1.21658 0.91248 0.89590 0.99110 1.21869 0.98634 0.97977 0.98809 1.21359 0.97003 0.92394 1.03139 1.21357 0.96968 0.92458 1.01690 0.87621 1.20197 0.84390 0.85892 0.80393 1.90543 1.22341 1.85976 1.48547 1.43420 1.23245 1.01603 1.48397 1.19165 0.94792 1.26365 1.07081 0.87054 1.25370 0.96031 0.96092 0.96645 1.69806 1.18272 1.35587 1.24062 0.87239 0.84068 0.79737 0.80347 1.19607 1.20674 1.18016 1.21373 1.01116 0.87554 0.92054 1.24437 0.77005 0.78503 0.89561 1.90670 1.34566 1.60725 1.52364 1.84567 1.72585 1.34054 1.42616 1.21394 0.98363 0.82629 0.96898 0.91772 0.92053 0.92410 0.89336 0.89107 0.89930 0.91447 0.90700 0.91310 0.91124 0.91507 0.91238 0.87047 0.87295 0.74274 0.91803 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 37.16 0.34 -1.23 16 2 C -0.14 -1.58 4.77 -27.88 -0.13 -1.71 16 3 C 0.51 8.40 7.70 -10.99 -0.08 8.32 16 4 O -0.53 -11.44 15.39 5.55 0.09 -11.35 16 5 N -0.61 -9.62 2.98 -173.06 -0.52 -10.14 16 6 C 0.11 1.20 6.31 -3.93 -0.02 1.18 16 7 C -0.13 -1.57 6.06 -26.83 -0.16 -1.73 16 8 C -0.10 -1.58 4.67 -26.69 -0.12 -1.70 16 9 C -0.10 -2.00 1.86 -91.67 -0.17 -2.17 16 10 H 0.11 2.19 6.92 -51.93 -0.36 1.83 16 11 C 0.50 11.51 6.53 -10.99 -0.07 11.43 16 12 O -0.59 -14.22 15.78 5.54 0.09 -14.13 16 13 N -0.45 -10.73 1.73 -116.10 -0.20 -10.94 16 14 C -0.35 -9.06 8.69 -14.94 -0.13 -9.19 16 15 H 0.11 3.16 6.28 -52.48 -0.33 2.83 16 16 C 0.07 1.75 5.25 -17.47 -0.09 1.66 16 17 N -0.84 -23.21 13.96 55.50 0.77 -22.43 16 18 Si 0.86 19.15 25.25 -169.99 -4.29 14.85 16 19 H -0.27 -5.67 6.48 56.52 0.37 -5.30 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 22 C 0.10 2.31 4.59 -5.19 -0.02 2.28 16 23 C 0.47 9.99 8.35 36.00 0.30 10.29 16 24 O -0.50 -12.17 17.05 -18.75 -0.32 -12.49 16 25 O -0.53 -8.87 13.42 -39.27 -0.53 -9.39 16 26 C 0.13 2.51 5.61 -3.74 -0.02 2.49 16 27 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.77 7.95 -51.93 -0.41 0.36 16 31 H 0.09 0.84 7.68 -51.93 -0.40 0.44 16 32 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.11 2.45 3.48 -51.93 -0.18 2.27 16 40 H 0.11 2.23 7.55 -51.93 -0.39 1.84 16 41 H 0.40 4.76 9.10 45.56 0.41 5.18 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.11 2.47 6.08 -51.93 -0.32 2.16 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -34.01 348.12 -5.30 -39.31 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.24 Total: 11.56 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: -0.40 Total: 19.91 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.06 Total: -43.51 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.67 Total: -47.37 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.29 Total: 14.85 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.01 -5.30 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736836827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.235 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds