Wall clock time and date at job start Fri Apr 10 2020 18:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47405 * 2 1 4 4 O 1.21287 * 119.99849 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00198 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.62614 * 359.71301 * 5 3 2 7 7 C 1.52764 * 109.00879 * 233.58413 * 6 5 3 8 8 C 1.53039 * 109.38833 * 305.59435 * 7 6 5 9 9 C 1.53043 * 109.53578 * 61.23404 * 8 7 6 10 10 H 1.08998 * 109.52125 * 58.60602 * 9 8 7 11 11 C 1.50697 * 109.49630 * 178.68596 * 9 8 7 12 12 O 1.21299 * 119.99699 * 24.84462 * 11 9 8 13 13 N 1.34779 * 120.00129 * 204.84924 * 11 9 8 14 14 C 1.37087 * 120.00075 * 4.21792 * 13 11 9 15 15 H 1.08010 * 120.00165 * 322.77347 * 14 13 11 16 16 C 1.38952 * 120.00162 * 142.77346 * 14 13 11 17 17 N 1.31411 * 120.00075 * 156.99114 * 16 14 13 18 18 Si 1.86792 * 119.99954 * 336.98772 * 16 14 13 19 19 H 1.48498 * 109.47016 * 91.22488 * 18 16 14 20 20 H 1.48502 * 109.47562 * 211.22559 * 18 16 14 21 21 H 1.48500 * 109.47183 * 331.22719 * 18 16 14 22 22 C 1.46506 * 119.99678 * 184.22122 * 13 11 9 23 23 C 1.50696 * 109.46924 * 84.03569 * 22 13 11 24 24 O 1.20824 * 120.00497 * 359.97438 * 23 22 13 25 25 O 1.34233 * 119.99724 * 179.97438 * 23 22 13 26 26 C 1.46920 * 120.63468 * 180.02562 * 5 3 2 27 27 H 1.09005 * 109.46730 * 300.00118 * 1 2 3 28 28 H 1.09002 * 109.47087 * 59.99988 * 1 2 3 29 29 H 1.08993 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46730 * 239.99882 * 2 1 3 31 31 H 1.09002 * 109.47087 * 120.00012 * 2 1 3 32 32 H 1.08994 * 109.58787 * 353.42555 * 6 5 3 33 33 H 1.09001 * 109.58609 * 113.85182 * 6 5 3 34 34 H 1.08998 * 109.56544 * 185.55425 * 7 6 5 35 35 H 1.09003 * 109.38196 * 65.52159 * 7 6 5 36 36 H 1.08999 * 109.45763 * 301.22163 * 8 7 6 37 37 H 1.08994 * 109.45070 * 181.25251 * 8 7 6 38 38 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46463 * 204.03196 * 22 13 11 40 40 H 1.08992 * 109.46988 * 324.03061 * 22 13 11 41 41 H 0.96699 * 116.99965 * 179.97438 * 25 23 22 42 42 H 1.09001 * 109.58716 * 246.15356 * 26 5 3 43 43 H 1.09003 * 109.58406 * 6.43353 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3244 0.5607 0.0052 7 6 5.2968 0.7559 1.1671 8 6 5.9313 2.1452 1.0707 9 6 4.8400 3.2139 1.1670 10 1 4.3037 3.1029 2.1094 11 6 5.4689 4.5820 1.1044 12 8 6.5436 4.7311 0.5620 13 7 4.8374 5.6397 1.6512 14 6 3.6658 5.4579 2.3393 15 1 2.9471 4.7272 1.9984 16 6 3.4027 6.2136 3.4752 17 7 2.1631 6.3917 3.8734 18 14 4.8111 6.9764 4.4364 19 1 5.0775 8.3440 3.9226 20 1 4.4467 7.0500 5.8741 21 1 6.0288 6.1417 4.2764 22 6 5.4031 6.9837 1.5100 23 6 4.9792 7.5709 0.1885 24 8 4.2771 6.9321 -0.5591 25 8 5.3817 8.8036 -0.1583 26 6 3.8625 3.0466 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7967 -0.3852 0.1271 33 1 4.8780 0.5544 -0.9337 34 1 6.0768 -0.0042 1.1219 35 1 4.7567 0.6672 2.1097 36 1 6.4508 2.2418 0.1174 37 1 6.6419 2.2771 1.8866 38 1 1.9794 6.9196 4.6661 39 1 5.0427 7.6165 2.3210 40 1 6.4908 6.9262 1.5500 41 1 5.0847 9.1374 -1.0158 42 1 4.3775 3.2476 -0.9394 43 1 3.0299 3.7405 0.1159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736836827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:46 Heat of formation + Delta-G solvation = -178.975340 kcal Electronic energy + Delta-G solvation = -27769.725435 eV Core-core repulsion = 23814.244367 eV Total energy + Delta-G solvation = -3955.481068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.85438 -41.20586 -40.30050 -38.22322 -37.22861 -36.75806 -34.32311 -34.08242 -33.36846 -32.35345 -29.91928 -27.11883 -26.93802 -25.35015 -24.11583 -23.27479 -21.92781 -20.83777 -19.82426 -19.29640 -19.09955 -18.44100 -18.01228 -17.54566 -17.09619 -16.89085 -16.70922 -16.61800 -15.89623 -15.77234 -15.13929 -15.04926 -14.71554 -14.55322 -14.44152 -14.33866 -14.05363 -13.73439 -13.58484 -13.51147 -13.02408 -12.95423 -12.66617 -12.63840 -12.42783 -12.31373 -12.04218 -12.01516 -11.86741 -11.83209 -11.76830 -11.54855 -11.22792 -10.86204 -10.53673 -9.97240 -9.67135 -8.57861 -6.24121 1.12429 1.14280 1.28483 1.41355 1.47254 1.68617 1.99950 2.04694 2.12373 2.56691 2.90931 3.56681 3.76957 3.86925 3.91936 3.98030 4.10397 4.12056 4.20854 4.22421 4.28252 4.29903 4.39964 4.58582 4.67681 4.75844 4.78182 4.85734 4.97058 5.01254 5.07427 5.10863 5.18360 5.23200 5.35870 5.45655 5.50448 5.52546 5.97965 6.09711 6.47127 6.82224 6.93788 7.20470 7.22684 7.55679 8.56673 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.005064 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.252631 B = 5528.234118 C = 5859.122009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.494 3.506 4 O -0.597 6.597 5 N -0.610 5.610 6 C 0.099 3.901 7 C -0.127 4.127 8 C -0.096 4.096 9 C -0.097 4.097 10 H 0.084 0.916 11 C 0.494 3.506 12 O -0.602 6.602 13 N -0.457 5.457 14 C -0.348 4.348 15 H 0.069 0.931 16 C 0.025 3.975 17 N -0.891 5.891 18 Si 0.923 3.077 19 H -0.244 1.244 20 H -0.275 1.275 21 H -0.252 1.252 22 C 0.093 3.907 23 C 0.470 3.530 24 O -0.538 6.538 25 O -0.506 6.506 26 C 0.143 3.857 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.283 0.717 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.425 0.575 42 H 0.057 0.943 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.393 -12.021 -4.242 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.284 3.716 4 O -0.478 6.478 5 N -0.343 5.343 6 C -0.021 4.021 7 C -0.164 4.164 8 C -0.134 4.134 9 C -0.119 4.119 10 H 0.103 0.897 11 C 0.285 3.715 12 O -0.486 6.486 13 N -0.178 5.178 14 C -0.475 4.475 15 H 0.087 0.913 16 C -0.180 4.180 17 N -0.526 5.526 18 Si 0.745 3.255 19 H -0.169 1.169 20 H -0.201 1.201 21 H -0.175 1.175 22 C -0.031 4.031 23 C 0.312 3.688 24 O -0.427 6.427 25 O -0.320 6.320 26 C 0.018 3.982 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.147 0.853 41 H 0.286 0.714 42 H 0.076 0.924 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.290 -11.707 -4.212 13.941 hybrid contribution -0.371 1.527 0.008 1.571 sum 5.919 -10.180 -4.204 12.504 Atomic orbital electron populations 1.21560 0.93807 1.02813 1.01389 1.21740 0.97856 0.90224 1.06965 1.21973 0.81355 0.93682 0.74541 1.90733 1.56279 1.48970 1.51820 1.48311 1.06429 1.06728 1.72796 1.22110 0.90777 0.89381 0.99850 1.21882 0.99597 0.96093 0.98872 1.21384 0.95649 0.93489 1.02920 1.21352 0.97996 0.92160 1.00423 0.89730 1.20834 0.84252 0.86964 0.79434 1.90509 1.22807 1.86478 1.48853 1.43459 1.22705 1.02900 1.48697 1.18802 0.94760 1.25996 1.07960 0.91346 1.26052 0.98387 0.96557 0.97044 1.69902 1.20520 1.37240 1.24942 0.86233 0.80422 0.80059 0.78797 1.16910 1.20057 1.17536 1.21524 1.02139 0.86766 0.92690 1.24244 0.76170 0.79365 0.89050 1.90673 1.36414 1.62125 1.53498 1.84479 1.71630 1.31509 1.44339 1.20906 0.96242 0.84549 0.96495 0.94530 0.93925 0.88575 0.85412 0.85933 0.85505 0.89735 0.86481 0.91551 0.91340 0.91619 0.90684 0.86737 0.85289 0.71361 0.92440 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.20 71.98 0.66 -2.36 16 2 C -0.13 -2.52 4.77 29.85 0.14 -2.38 16 3 C 0.49 16.63 7.70 87.66 0.67 17.31 16 4 O -0.60 -27.96 15.39 -3.05 -0.05 -28.01 16 5 N -0.61 -19.18 2.98 -819.83 -2.44 -21.63 16 6 C 0.10 1.88 6.31 86.22 0.54 2.43 16 7 C -0.13 -2.52 6.06 30.53 0.19 -2.34 16 8 C -0.10 -2.90 4.67 30.62 0.14 -2.76 16 9 C -0.10 -3.95 1.86 -11.48 -0.02 -3.97 16 10 H 0.08 3.76 6.92 -2.39 -0.02 3.74 16 11 C 0.49 23.39 6.53 87.66 0.57 23.96 16 12 O -0.60 -29.15 15.78 -3.09 -0.05 -29.20 16 13 N -0.46 -22.70 1.73 -639.60 -1.11 -23.81 16 14 C -0.35 -19.24 8.69 84.04 0.73 -18.51 16 15 H 0.07 4.30 6.28 -2.91 -0.02 4.28 16 16 C 0.02 1.33 5.25 84.93 0.45 1.77 16 17 N -0.89 -51.08 13.96 21.66 0.30 -50.78 16 18 Si 0.92 39.38 25.25 68.60 1.73 41.12 16 19 H -0.24 -9.39 6.48 99.48 0.64 -8.74 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.81 16 22 C 0.09 4.11 4.59 85.63 0.39 4.50 16 23 C 0.47 20.17 8.35 71.23 0.60 20.77 16 24 O -0.54 -27.17 17.05 21.97 0.37 -26.80 16 25 O -0.51 -16.12 13.42 -51.44 -0.69 -16.81 16 26 C 0.14 5.89 5.61 86.35 0.48 6.38 16 27 H 0.04 0.98 8.10 -2.38 -0.02 0.96 16 28 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.13 1.59 7.95 -2.38 -0.02 1.57 16 31 H 0.12 1.70 7.68 -2.39 -0.02 1.69 16 32 H 0.13 1.35 5.93 -2.39 -0.01 1.34 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 2.10 7.92 -2.39 -0.02 2.08 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.12 4.91 3.48 -2.39 -0.01 4.90 16 40 H 0.13 5.10 7.55 -2.39 -0.02 5.08 16 41 H 0.42 9.24 9.10 -74.06 -0.67 8.56 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.05 2.69 6.08 -2.39 -0.01 2.68 16 Total: -1.00 -82.45 348.12 3.94 -78.51 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.31 Total: 32.60 kcal Atomic # 6 Polarization: 39.24 SS G_CDS: 5.55 Total: 44.79 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.25 Total: -96.21 kcal Atomic # 8 Polarization: -100.40 SS G_CDS: -0.41 Total: -100.81 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.73 Total: 41.12 kcal Total: -82.45 3.94 -78.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736836827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.463 kcal (2) G-P(sol) polarization free energy of solvation -82.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds