Wall clock time and date at job start Fri Apr 10 2020 18:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99770 * 2 1 4 4 C 1.52998 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47320 * 65.00041 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99813 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00047 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47231 * 89.99796 * 11 9 7 13 13 H 1.48499 * 109.47342 * 210.00322 * 11 9 7 14 14 H 1.48505 * 109.46935 * 330.00024 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 N 1.46491 * 109.46957 * 179.72354 * 17 15 5 19 19 C 1.35315 * 125.87053 * 125.00065 * 18 17 15 20 20 C 1.35349 * 106.17628 * 180.02562 * 19 18 17 21 21 C 1.50703 * 126.74991 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47276 * 4.99966 * 21 20 19 23 23 C 1.53002 * 109.47086 * 124.99784 * 21 20 19 24 24 O 1.42903 * 109.47040 * 244.99602 * 21 20 19 25 25 N 1.33773 * 106.49861 * 359.97438 * 20 19 18 26 26 N 1.28628 * 108.88300 * 359.73822 * 25 20 19 27 27 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47260 * 300.00210 * 1 2 3 29 29 H 1.08999 * 109.47112 * 60.00586 * 1 2 3 30 30 H 1.08993 * 109.47691 * 59.99666 * 3 2 1 31 31 H 1.08999 * 109.46539 * 299.99231 * 3 2 1 32 32 H 1.08994 * 109.47354 * 304.99932 * 4 3 2 33 33 H 1.09001 * 109.47139 * 184.99506 * 4 3 2 34 34 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 35 35 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 36 36 H 0.97004 * 119.99796 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 39 39 H 1.08000 * 126.91222 * 0.02562 * 19 18 17 40 40 H 1.08997 * 109.47377 * 60.00196 * 23 21 20 41 41 H 1.09001 * 109.47124 * 179.97438 * 23 21 20 42 42 H 1.09004 * 109.46852 * 299.99655 * 23 21 20 43 43 H 0.96702 * 113.99735 * 300.00194 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2981 -0.9411 8 1 6.2201 -0.5462 -0.6497 9 6 5.8614 -2.6292 -0.9480 10 7 7.0791 -2.9831 -0.5992 11 14 4.6192 -3.9297 -1.4528 12 1 4.7060 -4.1550 -2.9180 13 1 4.9126 -5.1982 -0.7386 14 1 3.2512 -3.4698 -1.1029 15 6 4.2633 1.3328 -2.3201 16 8 4.6282 0.8188 -3.3563 17 6 4.1360 2.8315 -2.2263 18 7 4.5076 3.4343 -3.5087 19 6 3.7422 4.2771 -4.2401 20 6 4.4673 4.5862 -5.3403 21 6 4.0517 5.4956 -6.4679 22 1 3.0920 5.9542 -6.2300 23 6 5.1061 6.5881 -6.6570 24 8 3.9312 4.7363 -7.6725 25 7 5.6258 3.9266 -5.2295 26 7 5.6207 3.2580 -4.1306 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6886 1.8465 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8508 0.5686 0.8426 33 1 3.9785 2.1765 0.0901 34 1 3.3858 -1.3632 -0.6712 35 1 3.9139 -1.2124 -2.3644 36 1 7.3320 -3.9196 -0.6037 37 1 3.1057 3.0943 -1.9862 38 1 4.7976 3.2041 -1.4443 39 1 2.7519 4.6318 -3.9951 40 1 6.0658 6.1295 -6.8951 41 1 4.8057 7.2456 -7.4729 42 1 5.1980 7.1672 -5.7382 43 1 4.7494 4.2990 -7.9453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749304247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:53 Heat of formation + Delta-G solvation = -52.537540 kcal Electronic energy + Delta-G solvation = -26464.302866 eV Core-core repulsion = 22546.597303 eV Total energy + Delta-G solvation = -3917.705563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.29125 -40.93553 -38.78438 -38.37204 -36.70344 -35.53758 -34.74374 -32.93996 -31.65141 -30.67402 -30.14956 -28.71590 -27.07588 -25.13753 -24.62759 -24.02271 -23.08285 -22.07389 -20.19429 -19.16694 -18.74286 -18.56404 -17.68797 -17.28343 -16.91955 -16.82272 -16.74567 -16.27473 -16.09557 -15.91521 -15.61217 -15.48692 -15.06334 -14.75150 -14.44583 -13.95596 -13.83755 -13.55687 -13.37324 -13.12372 -12.93131 -12.88040 -12.80452 -12.68690 -12.51118 -12.07532 -12.05206 -11.94118 -11.86969 -11.76161 -11.50544 -11.20048 -10.84755 -10.70707 -10.50342 -10.22036 -9.50265 -8.35951 -6.39733 0.59550 1.26724 1.30166 1.32612 1.42111 1.48807 1.55403 2.17954 2.28643 2.95745 3.00957 3.18968 3.36999 3.58806 3.66807 3.78040 3.90442 4.08459 4.15851 4.29753 4.32376 4.40020 4.43286 4.51808 4.58108 4.65766 4.72729 4.83475 4.89681 4.90381 4.96366 4.96838 5.10502 5.12516 5.37053 5.44374 5.50363 5.58457 6.20031 6.34315 6.58786 6.61993 6.65543 7.15693 7.28333 7.51893 8.80995 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003774 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.841785 B = 7417.406644 C = 8610.668737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.421 6.421 3 C 0.043 3.957 4 C 0.094 3.906 5 N -0.583 5.583 6 C 0.239 3.761 7 C -0.534 4.534 8 H 0.032 0.968 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.942 3.058 12 H -0.281 1.281 13 H -0.273 1.273 14 H -0.239 1.239 15 C 0.483 3.517 16 O -0.578 6.578 17 C 0.101 3.899 18 N -0.279 5.279 19 C -0.020 4.020 20 C -0.080 4.080 21 C 0.196 3.804 22 H 0.145 0.855 23 C -0.172 4.172 24 O -0.573 6.573 25 N -0.298 5.298 26 N -0.110 5.110 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.190 0.810 38 H 0.155 0.845 39 H 0.247 0.753 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 21.402 0.233 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.340 6.340 3 C -0.034 4.034 4 C -0.028 4.028 5 N -0.314 5.314 6 C 0.116 3.884 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.186 4.186 10 N -0.585 5.585 11 Si 0.765 3.235 12 H -0.207 1.207 13 H -0.198 1.198 14 H -0.162 1.162 15 C 0.270 3.730 16 O -0.457 6.457 17 C -0.023 4.023 18 N -0.073 5.073 19 C -0.171 4.171 20 C -0.219 4.219 21 C 0.136 3.864 22 H 0.162 0.838 23 C -0.230 4.230 24 O -0.379 6.379 25 N -0.165 5.165 26 N -0.089 5.089 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.077 0.923 37 H 0.207 0.793 38 H 0.173 0.827 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -16.819 20.290 -0.173 26.355 hybrid contribution -0.064 -0.993 -0.071 0.998 sum -16.883 19.296 -0.244 25.640 Atomic orbital electron populations 1.22856 0.79888 1.03053 1.01021 1.88007 1.21197 1.29236 1.95607 1.23251 0.92417 0.84989 1.02756 1.22126 0.93947 1.00765 0.85947 1.47838 1.64267 1.07284 1.12027 1.19197 0.95035 0.78031 0.96111 1.21611 0.97610 0.92926 1.45148 0.94990 1.25788 0.97226 1.01025 0.94578 1.70047 1.20428 1.18062 1.49953 0.85795 0.80765 0.78594 0.78311 1.20746 1.19760 1.16174 1.21027 0.78086 0.90101 0.83833 1.90785 1.47544 1.75607 1.31774 1.22388 1.08476 0.89253 0.82153 1.47088 1.11678 1.30444 1.18045 1.24249 1.01809 0.97533 0.93467 1.23446 0.92696 1.05124 1.00660 1.20354 1.00809 0.86996 0.78279 0.83780 1.22377 0.98574 0.98599 1.03467 1.86505 1.40583 1.69081 1.41745 1.74956 1.21963 1.08823 1.10791 1.78507 1.07400 1.19574 1.03394 0.90356 0.91976 0.93381 0.88342 0.91571 0.90221 0.84950 0.92691 0.97676 0.92343 0.79251 0.82749 0.73672 0.93389 0.89840 0.90769 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -10.81 9.53 -148.98 -1.42 -12.23 16 3 C 0.04 0.73 6.28 71.98 0.45 1.18 16 4 C 0.09 2.21 5.62 86.38 0.49 2.70 16 5 N -0.58 -21.70 2.42 -826.15 -2.00 -23.70 16 6 C 0.24 11.74 4.05 85.63 0.35 12.09 16 7 C -0.53 -31.96 9.94 25.60 0.25 -31.70 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 9 C 0.01 0.72 5.47 84.66 0.46 1.18 16 10 N -0.94 -61.25 13.96 21.45 0.30 -60.95 16 11 Si 0.94 46.42 27.47 68.60 1.88 48.31 16 12 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.24 -10.73 6.54 99.48 0.65 -10.08 16 15 C 0.48 18.02 7.69 87.66 0.67 18.70 16 16 O -0.58 -29.67 15.27 -3.04 -0.05 -29.72 16 17 C 0.10 2.13 5.49 85.64 0.47 2.60 16 18 N -0.28 -7.71 3.19 -351.49 -1.12 -8.83 16 19 C -0.02 -0.39 11.49 83.49 0.96 0.57 16 20 C -0.08 -1.98 6.10 41.60 0.25 -1.73 16 21 C 0.20 3.50 4.09 29.85 0.12 3.62 16 22 H 0.14 1.56 8.12 -2.39 -0.02 1.54 16 23 C -0.17 -2.68 9.51 71.98 0.68 -1.99 16 24 O -0.57 -12.85 13.33 -148.98 -1.99 -14.83 16 25 N -0.30 -10.43 12.40 -48.60 -0.60 -11.03 16 26 N -0.11 -4.22 12.15 37.02 0.45 -3.77 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.82 7.33 -2.39 -0.02 0.81 16 32 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.13 1.76 6.43 -2.39 -0.02 1.74 16 34 H 0.06 2.60 6.18 -2.39 -0.01 2.59 16 35 H 0.01 0.28 6.85 -2.38 -0.02 0.26 16 36 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 37 H 0.19 1.49 7.22 -2.38 -0.02 1.48 16 38 H 0.16 2.41 7.40 -2.39 -0.02 2.39 16 39 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 43 H 0.39 8.09 9.04 -74.06 -0.67 7.42 16 Total: -1.00 -99.43 365.25 2.18 -97.26 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.30 Total: 10.58 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.41 Total: 8.93 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -2.97 Total: -108.29 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -3.45 Total: -56.78 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.88 Total: 48.31 kcal Total: -99.43 2.18 -97.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749304247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.719 kcal (2) G-P(sol) polarization free energy of solvation -99.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds