Wall clock time and date at job start Fri Apr 10 2020 18:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 120.00119 * 2 1 4 4 N 1.34774 * 120.00108 * 180.02562 * 2 1 3 5 5 C 1.46963 * 120.65178 * 5.85362 * 4 2 1 6 6 C 1.53197 * 108.88789 * 233.53750 * 5 4 2 7 7 C 1.53045 * 109.31062 * 305.44369 * 6 5 4 8 8 C 1.53036 * 109.53609 * 61.36403 * 7 6 5 9 9 C 1.46928 * 120.63263 * 186.03948 * 4 2 1 10 10 H 1.09006 * 109.58424 * 246.32053 * 9 4 2 11 11 C 1.50693 * 109.58631 * 6.59856 * 9 4 2 12 12 O 1.20832 * 120.00116 * 61.12450 * 11 9 4 13 13 O 1.34232 * 120.00386 * 241.12410 * 11 9 4 14 14 C 1.45196 * 116.99904 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.46854 * 179.97438 * 14 13 11 16 16 O 1.21277 * 120.00260 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00147 * 179.97438 * 15 14 13 18 18 C 1.46503 * 120.00108 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47088 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00203 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99630 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00212 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47159 * 59.99908 * 23 21 19 25 25 H 1.48507 * 109.47076 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47255 * 299.99704 * 23 21 19 27 27 H 1.09001 * 109.47451 * 239.99975 * 1 2 3 28 28 H 1.08997 * 109.47235 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47331 * 119.99931 * 1 2 3 30 30 H 1.09005 * 109.46822 * 113.75740 * 5 4 2 31 31 H 1.08998 * 109.71311 * 353.47091 * 5 4 2 32 32 H 1.08995 * 109.49580 * 185.49532 * 6 5 4 33 33 H 1.09001 * 109.52406 * 65.41272 * 6 5 4 34 34 H 1.09004 * 109.45856 * 301.34133 * 7 6 5 35 35 H 1.08998 * 109.45639 * 181.38365 * 7 6 5 36 36 H 1.09008 * 109.49441 * 178.67866 * 8 7 6 37 37 H 1.08998 * 109.52260 * 58.60458 * 8 7 6 38 38 H 1.09000 * 109.47405 * 60.00692 * 14 13 11 39 39 H 1.09000 * 109.47529 * 299.99440 * 14 13 11 40 40 H 0.97000 * 119.99721 * 0.02562 * 17 15 14 41 41 H 1.09000 * 109.46556 * 300.00185 * 18 17 15 42 42 H 1.08991 * 109.47129 * 60.00114 * 18 17 15 43 43 H 0.97005 * 119.99708 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4663 -2.4448 -0.1300 6 6 1.8711 -3.3593 1.0305 7 6 3.3955 -3.4920 1.0623 8 6 4.0243 -2.1155 1.2900 9 6 3.6440 -1.1869 0.1325 10 1 4.0900 -1.5538 -0.7920 11 6 4.1443 0.2058 0.4167 12 8 3.7866 0.7842 1.4155 13 8 4.9873 0.8040 -0.4397 14 6 5.4276 2.1458 -0.1021 15 6 6.3623 2.6514 -1.1707 16 8 6.6306 1.9502 -2.1231 17 7 6.8994 3.8833 -1.0684 18 6 7.8077 4.3750 -2.1075 19 6 8.2648 5.7676 -1.7572 20 1 7.9135 6.2394 -0.8514 21 6 9.1306 6.4398 -2.5935 22 7 9.5579 5.8655 -3.6967 23 14 9.6966 8.1663 -2.1596 24 1 10.4050 8.1417 -0.8547 25 1 10.6174 8.6646 -3.2128 26 1 8.5180 9.0648 -2.0662 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.7327 -2.9158 -1.0763 31 1 0.3910 -2.2695 -0.0992 32 1 1.4232 -4.3432 0.8916 33 1 1.5235 -2.9306 1.9704 34 1 3.7445 -3.8982 0.1130 35 1 3.6848 -4.1618 1.8721 36 1 5.1089 -2.2141 1.3360 37 1 3.6570 -1.6977 2.2273 38 1 5.9474 2.1275 0.8557 39 1 4.5627 2.8057 -0.0337 40 1 6.6846 4.4444 -0.3069 41 1 8.6727 3.7153 -2.1756 42 1 7.2881 4.3930 -3.0654 43 1 10.1673 6.3383 -4.2850 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756220726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:10 Heat of formation + Delta-G solvation = -155.523100 kcal Electronic energy + Delta-G solvation = -26261.504120 eV Core-core repulsion = 22307.040017 eV Total energy + Delta-G solvation = -3954.464103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32802 -39.56387 -38.43510 -37.75168 -36.00819 -34.15507 -33.48446 -32.36684 -32.25410 -29.81768 -29.10138 -26.80972 -25.83794 -24.35959 -22.56940 -21.61173 -21.20802 -19.82192 -19.25914 -18.01087 -17.36341 -17.05899 -16.63295 -16.02540 -15.87552 -15.68860 -15.29801 -15.02647 -14.74238 -14.53589 -14.29134 -14.18187 -13.93097 -13.70509 -13.30373 -12.92795 -12.75331 -12.66277 -12.40542 -12.29542 -11.94608 -11.84539 -11.66152 -11.61096 -11.35954 -11.19499 -10.98768 -10.85764 -10.45701 -10.30083 -10.22173 -9.87743 -9.40085 -9.09328 -9.05105 -8.72328 -7.90246 -6.14807 -4.21870 2.02936 2.32122 2.59376 2.87826 3.27749 3.31090 3.32178 3.34073 3.98247 4.20034 4.25959 4.37018 4.39410 4.48240 4.52717 4.75857 4.84603 4.91185 4.96000 5.02059 5.03895 5.21143 5.25439 5.33400 5.34309 5.34961 5.44296 5.50955 5.54360 5.56305 5.57388 5.84072 5.98148 6.63380 6.94326 7.29932 7.40571 7.52459 7.66517 7.79299 7.97442 8.01722 8.59101 8.77883 9.05903 9.44253 10.95399 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002468 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.318614 B =11340.789327 C =11705.779180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.506 3.494 3 O -0.512 6.512 4 N -0.609 5.609 5 C 0.110 3.890 6 C -0.139 4.139 7 C -0.118 4.118 8 C -0.125 4.125 9 C 0.156 3.844 10 H 0.106 0.894 11 C 0.478 3.522 12 O -0.499 6.499 13 O -0.329 6.329 14 C 0.057 3.943 15 C 0.501 3.499 16 O -0.537 6.537 17 N -0.708 5.708 18 C 0.252 3.748 19 C -0.544 4.544 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.886 5.886 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.393 0.607 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.329 -21.128 10.822 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.296 3.704 3 O -0.387 6.387 4 N -0.347 5.347 5 C -0.012 4.012 6 C -0.177 4.177 7 C -0.155 4.155 8 C -0.163 4.163 9 C 0.051 3.949 10 H 0.123 0.877 11 C 0.321 3.679 12 O -0.386 6.386 13 O -0.244 6.244 14 C -0.021 4.021 15 C 0.284 3.716 16 O -0.414 6.414 17 N -0.358 5.358 18 C 0.131 3.869 19 C -0.582 4.582 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.225 0.775 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.760 -20.789 10.224 29.810 hybrid contribution 0.202 1.286 0.617 1.441 sum -18.559 -19.503 10.841 29.023 Atomic orbital electron populations 1.21892 0.90870 1.05810 1.04038 1.20992 0.91082 0.82903 0.75469 1.90785 1.68797 1.31019 1.48099 1.48103 1.05062 1.07107 1.74446 1.21840 0.97168 0.82991 0.99173 1.21972 0.96699 0.99958 0.99063 1.21510 0.94939 0.96063 1.02994 1.21900 1.02068 0.94775 0.97563 1.20660 0.81598 0.90902 1.01703 0.87656 1.22646 0.76024 0.87718 0.81557 1.90630 1.54555 1.64490 1.28946 1.86464 1.58628 1.30050 1.49282 1.22746 0.99093 0.81849 0.98397 1.19951 0.81720 0.83001 0.86908 1.90684 1.61199 1.56552 1.33005 1.46349 1.47587 1.14502 1.27366 1.19152 0.87853 0.93982 0.85872 1.21186 1.29031 0.99617 1.08412 0.91823 1.24953 0.95732 0.98632 0.94699 1.69972 1.32480 1.37925 1.11927 0.86446 0.78619 0.83549 0.78123 1.20045 1.21066 1.20034 0.89267 0.88730 0.89235 0.90593 0.88926 0.90122 0.91100 0.91048 0.90706 0.89648 0.90055 0.88998 0.88415 0.77459 0.95307 0.95323 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 8.68 36.00 0.31 -0.82 16 2 C 0.51 6.05 7.50 -10.99 -0.08 5.97 16 3 O -0.51 -8.88 12.84 -21.03 -0.27 -9.15 16 4 N -0.61 -5.87 2.98 -166.51 -0.50 -6.37 16 5 C 0.11 0.54 6.34 -3.69 -0.02 0.51 16 6 C -0.14 -0.56 6.08 -26.61 -0.16 -0.72 16 7 C -0.12 -0.60 5.88 -26.69 -0.16 -0.76 16 8 C -0.12 -1.04 5.32 -26.62 -0.14 -1.18 16 9 C 0.16 1.76 3.34 -68.76 -0.23 1.53 16 10 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 11 C 0.48 7.75 4.52 36.00 0.16 7.91 16 12 O -0.50 -9.05 14.33 -26.93 -0.39 -9.44 16 13 O -0.33 -6.14 9.75 -46.75 -0.46 -6.60 16 14 C 0.06 1.03 5.94 36.01 0.21 1.24 16 15 C 0.50 11.06 7.91 -10.98 -0.09 10.98 16 16 O -0.54 -14.03 16.50 -14.10 -0.23 -14.27 16 17 N -0.71 -15.80 5.55 -61.47 -0.34 -16.14 16 18 C 0.25 6.88 5.43 -5.19 -0.03 6.85 16 19 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 20 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 21 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 23 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H 0.09 0.41 7.93 -51.93 -0.41 0.00 16 28 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.09 0.39 7.70 -51.93 -0.40 -0.01 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.25 5.94 -51.93 -0.31 -0.05 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 37 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 38 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 39 H 0.10 1.73 8.13 -51.93 -0.42 1.30 16 40 H 0.39 7.49 8.32 -40.82 -0.34 7.15 16 41 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -38.57 359.19 -8.17 -46.74 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.48 Total: 1.57 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: -0.64 Total: 17.79 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.10 Total: -48.25 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.34 Total: -39.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.57 -8.17 -46.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756220726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.781 kcal (2) G-P(sol) polarization free energy of solvation -38.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds