Wall clock time and date at job start Fri Apr 10 2020 18:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 120.00119 * 2 1 4 4 N 1.34774 * 120.00108 * 180.02562 * 2 1 3 5 5 C 1.46963 * 120.65178 * 5.85362 * 4 2 1 6 6 C 1.53197 * 108.88789 * 233.53750 * 5 4 2 7 7 C 1.53045 * 109.31062 * 305.44369 * 6 5 4 8 8 C 1.53036 * 109.53609 * 61.36403 * 7 6 5 9 9 C 1.46928 * 120.63263 * 186.03948 * 4 2 1 10 10 H 1.09006 * 109.58424 * 246.32053 * 9 4 2 11 11 C 1.50693 * 109.58631 * 6.59856 * 9 4 2 12 12 O 1.20832 * 120.00116 * 61.12450 * 11 9 4 13 13 O 1.34232 * 120.00386 * 241.12410 * 11 9 4 14 14 C 1.45196 * 116.99904 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.46854 * 179.97438 * 14 13 11 16 16 O 1.21277 * 120.00260 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00147 * 179.97438 * 15 14 13 18 18 C 1.46503 * 120.00108 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47088 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00203 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99630 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00212 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47159 * 59.99908 * 23 21 19 25 25 H 1.48507 * 109.47076 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47255 * 299.99704 * 23 21 19 27 27 H 1.09001 * 109.47451 * 239.99975 * 1 2 3 28 28 H 1.08997 * 109.47235 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47331 * 119.99931 * 1 2 3 30 30 H 1.09005 * 109.46822 * 113.75740 * 5 4 2 31 31 H 1.08998 * 109.71311 * 353.47091 * 5 4 2 32 32 H 1.08995 * 109.49580 * 185.49532 * 6 5 4 33 33 H 1.09001 * 109.52406 * 65.41272 * 6 5 4 34 34 H 1.09004 * 109.45856 * 301.34133 * 7 6 5 35 35 H 1.08998 * 109.45639 * 181.38365 * 7 6 5 36 36 H 1.09008 * 109.49441 * 178.67866 * 8 7 6 37 37 H 1.08998 * 109.52260 * 58.60458 * 8 7 6 38 38 H 1.09000 * 109.47405 * 60.00692 * 14 13 11 39 39 H 1.09000 * 109.47529 * 299.99440 * 14 13 11 40 40 H 0.97000 * 119.99721 * 0.02562 * 17 15 14 41 41 H 1.09000 * 109.46556 * 300.00185 * 18 17 15 42 42 H 1.08991 * 109.47129 * 60.00114 * 18 17 15 43 43 H 0.97005 * 119.99708 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4663 -2.4448 -0.1300 6 6 1.8711 -3.3593 1.0305 7 6 3.3955 -3.4920 1.0623 8 6 4.0243 -2.1155 1.2900 9 6 3.6440 -1.1869 0.1325 10 1 4.0900 -1.5538 -0.7920 11 6 4.1443 0.2058 0.4167 12 8 3.7866 0.7842 1.4155 13 8 4.9873 0.8040 -0.4397 14 6 5.4276 2.1458 -0.1021 15 6 6.3623 2.6514 -1.1707 16 8 6.6306 1.9502 -2.1231 17 7 6.8994 3.8833 -1.0684 18 6 7.8077 4.3750 -2.1075 19 6 8.2648 5.7676 -1.7572 20 1 7.9135 6.2394 -0.8514 21 6 9.1306 6.4398 -2.5935 22 7 9.5579 5.8655 -3.6967 23 14 9.6966 8.1663 -2.1596 24 1 10.4050 8.1417 -0.8547 25 1 10.6174 8.6646 -3.2128 26 1 8.5180 9.0648 -2.0662 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.7327 -2.9158 -1.0763 31 1 0.3910 -2.2695 -0.0992 32 1 1.4232 -4.3432 0.8916 33 1 1.5235 -2.9306 1.9704 34 1 3.7445 -3.8982 0.1130 35 1 3.6848 -4.1618 1.8721 36 1 5.1089 -2.2141 1.3360 37 1 3.6570 -1.6977 2.2273 38 1 5.9474 2.1275 0.8557 39 1 4.5627 2.8057 -0.0337 40 1 6.6846 4.4444 -0.3069 41 1 8.6727 3.7153 -2.1756 42 1 7.2881 4.3930 -3.0654 43 1 10.1673 6.3383 -4.2850 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756220726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:09 Heat of formation + Delta-G solvation = -182.810057 kcal Electronic energy + Delta-G solvation = -26262.687371 eV Core-core repulsion = 22307.040017 eV Total energy + Delta-G solvation = -3955.647354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34526 -40.93281 -40.06280 -38.51913 -37.39113 -36.22321 -34.45221 -34.17321 -32.96702 -30.83821 -30.39511 -28.63944 -26.67989 -25.14820 -24.50591 -22.54629 -21.99208 -21.69665 -20.09594 -19.26289 -19.01029 -18.21540 -17.89882 -17.51843 -17.15577 -16.96682 -16.75054 -16.43789 -15.97165 -15.90314 -15.20794 -15.05944 -14.86644 -14.63696 -14.47388 -14.24723 -14.08357 -13.88040 -13.71804 -13.56100 -13.22040 -12.99111 -12.98086 -12.70043 -12.58190 -12.25986 -12.16558 -11.89635 -11.78901 -11.65497 -11.55596 -11.39172 -10.95311 -10.83264 -10.80913 -9.98357 -9.83952 -8.31602 -6.48782 0.97389 1.29167 1.42486 1.46075 1.48361 1.51151 1.55033 1.98273 2.31082 2.50284 3.03084 3.43237 3.62859 3.72016 3.77463 3.79998 3.94589 3.99660 4.04283 4.07173 4.17294 4.38166 4.47525 4.58754 4.65583 4.74513 4.83919 4.92999 5.02653 5.04834 5.13027 5.17759 5.18656 5.29561 5.37279 5.41168 5.44416 5.59745 5.78608 6.22330 6.58101 6.65068 6.75298 7.02653 7.15639 7.30024 8.80533 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002468 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.318614 B =11340.789327 C =11705.779180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.489 3.511 3 O -0.579 6.579 4 N -0.605 5.605 5 C 0.101 3.899 6 C -0.134 4.134 7 C -0.114 4.114 8 C -0.119 4.119 9 C 0.153 3.847 10 H 0.112 0.888 11 C 0.473 3.527 12 O -0.523 6.523 13 O -0.352 6.352 14 C 0.070 3.930 15 C 0.503 3.497 16 O -0.582 6.582 17 N -0.698 5.698 18 C 0.267 3.733 19 C -0.560 4.560 20 H 0.085 0.915 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.987 3.013 24 H -0.261 1.261 25 H -0.283 1.283 26 H -0.263 1.263 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.411 0.589 41 H -0.005 1.005 42 H -0.009 1.009 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 -22.202 12.349 33.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.281 3.719 3 O -0.459 6.459 4 N -0.342 5.342 5 C -0.019 4.019 6 C -0.172 4.172 7 C -0.152 4.152 8 C -0.157 4.157 9 C 0.048 3.952 10 H 0.129 0.871 11 C 0.317 3.683 12 O -0.411 6.411 13 O -0.268 6.268 14 C -0.007 4.007 15 C 0.288 3.712 16 O -0.462 6.462 17 N -0.350 5.350 18 C 0.145 3.855 19 C -0.597 4.597 20 H 0.103 0.897 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.810 3.190 24 H -0.186 1.186 25 H -0.209 1.209 26 H -0.188 1.188 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.122 0.878 40 H 0.247 0.753 41 H 0.013 0.987 42 H 0.009 0.991 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.551 -21.923 11.799 32.283 hybrid contribution 0.700 1.505 0.124 1.664 sum -19.851 -20.419 11.923 30.873 Atomic orbital electron populations 1.21922 0.86856 1.06048 1.06754 1.22017 0.93183 0.82466 0.74252 1.90742 1.70240 1.33415 1.51511 1.48362 1.04282 1.08456 1.73059 1.22285 0.98328 0.80901 1.00356 1.21980 0.95770 1.01141 0.98315 1.21550 0.95719 0.93802 1.04085 1.21923 1.02447 0.95946 0.95411 1.20871 0.83051 0.88082 1.03217 0.87062 1.23634 0.74837 0.89068 0.80716 1.90593 1.55092 1.65480 1.29959 1.86470 1.59672 1.29951 1.50722 1.22527 0.98379 0.82445 0.97356 1.20600 0.81324 0.82222 0.87028 1.90654 1.62773 1.57697 1.35082 1.46058 1.46842 1.15096 1.26973 1.18652 0.86986 0.94072 0.85791 1.21566 1.29293 0.99569 1.09315 0.89742 1.26077 0.95545 1.03617 0.94273 1.70133 1.33206 1.40165 1.13282 0.85170 0.78360 0.77262 0.78200 1.18597 1.20871 1.18760 0.86497 0.89890 0.86149 0.89108 0.86132 0.87151 0.91705 0.90038 0.89298 0.89605 0.91619 0.86293 0.87805 0.75260 0.98724 0.99069 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.68 71.24 0.62 -1.17 16 2 C 0.49 11.43 7.50 87.66 0.66 12.09 16 3 O -0.58 -20.77 12.84 22.41 0.29 -20.48 16 4 N -0.60 -10.83 2.98 -799.10 -2.38 -13.21 16 5 C 0.10 0.64 6.34 86.36 0.55 1.19 16 6 C -0.13 -0.60 6.08 30.68 0.19 -0.41 16 7 C -0.11 -0.85 5.88 30.62 0.18 -0.67 16 8 C -0.12 -1.87 5.32 30.67 0.16 -1.71 16 9 C 0.15 3.41 3.34 44.22 0.15 3.55 16 10 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 11 C 0.47 15.74 4.52 71.23 0.32 16.06 16 12 O -0.52 -19.50 14.33 29.76 0.43 -19.08 16 13 O -0.35 -13.60 9.75 -44.28 -0.43 -14.03 16 14 C 0.07 2.60 5.94 71.24 0.42 3.03 16 15 C 0.50 22.99 7.91 87.66 0.69 23.69 16 16 O -0.58 -31.93 16.50 15.78 0.26 -31.67 16 17 N -0.70 -32.01 5.55 -466.79 -2.59 -34.60 16 18 C 0.27 15.25 5.43 85.63 0.46 15.72 16 19 C -0.56 -31.34 9.28 25.60 0.24 -31.10 16 20 H 0.08 4.28 7.60 -2.91 -0.02 4.25 16 21 C 0.00 0.27 5.46 84.65 0.46 0.73 16 22 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 23 Si 0.99 43.20 29.54 68.60 2.03 45.23 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 27 H 0.12 0.68 7.93 -2.39 -0.02 0.66 16 28 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 29 H 0.12 0.62 7.70 -2.38 -0.02 0.60 16 30 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.12 0.11 5.94 -2.39 -0.01 0.10 16 32 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.07 1.24 7.94 -2.39 -0.02 1.22 16 38 H 0.12 3.75 8.13 -2.39 -0.02 3.73 16 39 H 0.10 3.76 8.13 -2.39 -0.02 3.74 16 40 H 0.41 15.67 8.32 -92.71 -0.77 14.90 16 41 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -89.42 359.19 3.24 -86.18 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.25 Total: 17.33 kcal Atomic # 6 Polarization: 35.89 SS G_CDS: 5.10 Total: 40.99 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.69 Total: -104.48 kcal Atomic # 8 Polarization: -85.80 SS G_CDS: 0.54 Total: -85.26 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -89.42 3.24 -86.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756220726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.631 kcal (2) G-P(sol) polarization free energy of solvation -89.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds