Wall clock time and date at job start Fri Apr 10 2020 18:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46670 * 2 1 4 4 O 1.45194 * 109.47226 * 240.00047 * 2 1 3 5 5 C 1.34227 * 117.00277 * 89.99816 * 4 2 1 6 6 O 1.20818 * 119.99902 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00019 * 180.02562 * 5 4 2 8 8 H 1.08991 * 109.70415 * 60.51656 * 7 5 4 9 9 C 1.53347 * 109.67345 * 181.03661 * 7 5 4 10 10 C 1.52938 * 108.66261 * 187.27608 * 9 7 5 11 11 N 1.45751 * 110.47708 * 309.21576 * 10 9 7 12 12 C 1.33354 * 124.10921 * 19.11715 * 11 10 9 13 13 O 1.21276 * 118.24630 * 177.73249 * 12 11 10 14 14 C 1.50171 * 123.50876 * 357.74542 * 12 11 10 15 15 C 1.50704 * 109.46791 * 119.99509 * 2 1 3 16 16 O 1.21283 * 119.99421 * 120.00219 * 15 2 1 17 17 N 1.34768 * 120.00202 * 300.00300 * 15 2 1 18 18 C 1.46499 * 120.00288 * 359.97438 * 17 15 2 19 19 C 1.46504 * 119.99843 * 180.02562 * 17 15 2 20 20 C 1.50698 * 109.47125 * 89.99900 * 19 17 15 21 21 H 1.08000 * 120.00313 * 359.97438 * 20 19 17 22 22 C 1.37880 * 119.99683 * 179.97438 * 20 19 17 23 23 N 1.31515 * 120.00158 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99672 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47525 * 60.00624 * 24 22 20 26 26 H 1.48506 * 109.47036 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47504 * 299.99902 * 24 22 20 28 28 H 1.08999 * 109.46957 * 60.00265 * 1 2 3 29 29 H 1.08996 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47392 * 300.00417 * 1 2 3 31 31 H 1.08998 * 109.60199 * 307.02237 * 9 7 5 32 32 H 1.08998 * 109.60261 * 67.50337 * 9 7 5 33 33 H 1.08997 * 109.29131 * 188.91446 * 10 9 7 34 34 H 1.09000 * 109.14794 * 69.42747 * 10 9 7 35 35 H 0.96998 * 117.94787 * 199.08488 * 11 10 9 36 36 H 1.09004 * 109.40592 * 257.46214 * 14 12 11 37 37 H 1.09004 * 109.33113 * 137.67106 * 14 12 11 38 38 H 1.09000 * 109.46922 * 90.00106 * 18 17 15 39 39 H 1.09002 * 109.47657 * 210.00197 * 18 17 15 40 40 H 1.09003 * 109.47375 * 330.00066 * 18 17 15 41 41 H 1.09006 * 109.46597 * 209.99597 * 19 17 15 42 42 H 1.08996 * 109.47181 * 329.99678 * 19 17 15 43 43 H 0.96998 * 120.00226 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1855 5 6 2.2171 0.0640 -2.2811 6 8 1.9982 1.2518 -2.2503 7 6 2.7183 -0.5773 -3.5494 8 1 2.0069 -1.3314 -3.8858 9 6 2.8897 0.4916 -4.6355 10 6 3.2214 -0.2026 -5.9573 11 7 4.3251 -1.1378 -5.7791 12 6 4.7092 -1.6249 -4.5987 13 8 5.6158 -2.4302 -4.5777 14 6 4.0791 -1.2300 -3.2941 15 6 2.0323 -0.7103 1.2306 16 8 2.7296 -1.6964 1.1193 17 7 1.7066 -0.2499 2.4546 18 6 0.8648 0.9416 2.5890 19 6 2.1954 -0.9401 3.6508 20 6 3.5227 -0.3560 4.0607 21 1 3.9589 0.4486 3.4873 22 6 4.1803 -0.8489 5.1678 23 7 3.6490 -1.8283 5.8664 24 14 5.8260 -0.1254 5.6755 25 1 5.6612 1.3207 5.9705 26 1 6.3213 -0.8250 6.8882 27 1 6.8041 -0.2971 4.5714 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9638 1.0568 -4.7417 32 1 3.7022 1.1645 -4.3614 33 1 3.5004 0.5472 -6.6977 34 1 2.3427 -0.7445 -6.3069 35 1 4.8103 -1.4241 -6.5687 36 1 4.7285 -0.5231 -2.7775 37 1 3.9447 -2.1172 -2.6751 38 1 -0.1832 0.6440 2.6221 39 1 1.1226 1.4669 3.5086 40 1 1.0287 1.6004 1.7362 41 1 1.4774 -0.8148 4.4614 42 1 2.3169 -2.0013 3.4338 43 1 4.1114 -2.1748 6.6455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761219038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:21 Heat of formation + Delta-G solvation = -181.170114 kcal Electronic energy + Delta-G solvation = -26484.915003 eV Core-core repulsion = 22529.338763 eV Total energy + Delta-G solvation = -3955.576241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21845 -41.22932 -40.47068 -38.02408 -37.23240 -36.73061 -34.95957 -34.42023 -32.89205 -30.73425 -29.57943 -27.76894 -26.97522 -25.87366 -24.75340 -23.80776 -21.83721 -20.47256 -20.28813 -19.15095 -18.69493 -18.44563 -18.13115 -17.43903 -17.33821 -16.92167 -16.83497 -16.45359 -16.23916 -15.79089 -15.30818 -15.06681 -14.79729 -14.61050 -14.51485 -14.27314 -14.08147 -13.67578 -13.54407 -13.35621 -13.03407 -12.93948 -12.81890 -12.80328 -12.60978 -12.42306 -12.25638 -12.21066 -12.16310 -11.91270 -11.82059 -11.74231 -10.98314 -10.66300 -10.61541 -10.10247 -9.52468 -8.25316 -6.40032 0.96894 1.26968 1.35269 1.39733 1.46610 1.48996 1.62072 2.23986 2.29941 2.42141 3.04791 3.27861 3.39309 3.46301 3.57065 3.64548 3.74636 3.86203 4.01496 4.12068 4.32353 4.37867 4.53331 4.57546 4.64201 4.68092 4.68165 4.81382 4.88754 4.94643 4.95266 5.11627 5.14519 5.18677 5.31443 5.49796 5.76792 5.81352 6.01887 6.23033 6.49118 6.62955 6.69028 7.12205 7.19937 7.34866 8.81797 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.003324 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.953041 B = 8422.021714 C = 9551.592859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.116 0.884 4 O -0.343 6.343 5 C 0.467 3.533 6 O -0.516 6.516 7 C -0.073 4.073 8 H 0.143 0.857 9 C -0.119 4.119 10 C 0.111 3.889 11 N -0.708 5.708 12 C 0.527 3.473 13 O -0.604 6.604 14 C -0.129 4.129 15 C 0.497 3.503 16 O -0.580 6.580 17 N -0.600 5.600 18 C 0.068 3.932 19 C 0.261 3.739 20 C -0.549 4.549 21 H 0.052 0.948 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.965 3.035 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.281 1.281 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.409 0.591 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.034 0.966 42 H 0.000 1.000 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 9.494 -24.119 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 H 0.133 0.867 4 O -0.259 6.259 5 C 0.311 3.689 6 O -0.405 6.405 7 C -0.092 4.092 8 H 0.161 0.839 9 C -0.157 4.157 10 C -0.011 4.011 11 N -0.359 5.359 12 C 0.314 3.686 13 O -0.486 6.486 14 C -0.169 4.169 15 C 0.284 3.716 16 O -0.460 6.460 17 N -0.332 5.332 18 C -0.074 4.074 19 C 0.140 3.860 20 C -0.587 4.587 21 H 0.071 0.929 22 C -0.189 4.189 23 N -0.565 5.565 24 Si 0.790 3.210 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.207 1.207 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.246 0.754 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.940 8.924 -23.749 26.900 hybrid contribution 1.268 -0.135 0.754 1.482 sum -7.671 8.789 -22.995 25.785 Atomic orbital electron populations 1.22410 0.89054 1.04546 1.06316 1.22528 0.97954 0.96590 0.80826 0.86654 1.86632 1.76703 1.42468 1.20080 1.24122 0.73593 0.85746 0.85467 1.90636 1.48738 1.16749 1.84338 1.21305 0.97690 1.00692 0.89526 0.83904 1.21907 1.05465 0.96228 0.92096 1.21721 0.89569 0.92598 0.97224 1.45487 1.35609 1.46551 1.08243 1.19949 0.82311 0.79811 0.86510 1.90775 1.33232 1.36608 1.88018 1.21584 0.95916 1.03743 0.95633 1.20750 0.80689 0.84905 0.85294 1.90679 1.39592 1.28791 1.86894 1.48041 1.50145 1.29571 1.05420 1.22251 0.94742 0.86252 1.04140 1.18827 0.93898 0.91760 0.81549 1.21680 1.06092 1.19370 1.11586 0.92944 1.25824 1.01696 0.95201 0.96189 1.70027 1.40706 1.27044 1.18745 0.85505 0.78852 0.79221 0.77470 1.18270 1.20162 1.20654 0.88965 0.91403 0.87112 0.86654 0.90736 0.86570 0.88422 0.75409 0.88344 0.88064 0.89537 0.90800 0.89185 0.94837 0.98202 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 9.18 71.98 0.66 -2.91 16 2 C 0.08 2.42 2.18 29.85 0.07 2.48 16 3 H 0.12 3.29 6.41 -2.39 -0.02 3.28 16 4 O -0.34 -10.54 9.35 -45.03 -0.42 -10.96 16 5 C 0.47 11.12 7.21 71.24 0.51 11.64 16 6 O -0.52 -13.18 15.11 21.99 0.33 -12.85 16 7 C -0.07 -1.17 2.71 -11.40 -0.03 -1.21 16 8 H 0.14 1.62 8.13 -2.39 -0.02 1.60 16 9 C -0.12 -1.16 4.71 30.69 0.14 -1.01 16 10 C 0.11 0.53 7.17 86.50 0.62 1.15 16 11 N -0.71 -8.77 5.45 -467.31 -2.55 -11.32 16 12 C 0.53 11.77 7.71 87.71 0.68 12.44 16 13 O -0.60 -19.85 17.78 -3.02 -0.05 -19.90 16 14 C -0.13 -2.83 5.29 29.71 0.16 -2.67 16 15 C 0.50 21.26 7.15 87.66 0.63 21.88 16 16 O -0.58 -31.36 16.08 15.76 0.25 -31.10 16 17 N -0.60 -25.15 2.86 -851.12 -2.43 -27.58 16 18 C 0.07 1.90 8.80 127.77 1.12 3.02 16 19 C 0.26 13.99 5.16 85.63 0.44 14.43 16 20 C -0.55 -31.81 9.39 25.60 0.24 -31.57 16 21 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 22 C 0.01 0.60 5.46 84.66 0.46 1.06 16 23 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 24 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.97 4.53 -2.38 -0.01 1.95 16 31 H 0.12 0.83 7.89 -2.39 -0.02 0.81 16 32 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 33 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.41 4.16 8.80 -92.71 -0.82 3.35 16 36 H 0.10 2.33 8.09 -2.39 -0.02 2.31 16 37 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.09 1.86 6.95 -2.39 -0.02 1.84 16 39 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 40 H 0.09 1.97 6.01 -2.39 -0.01 1.96 16 41 H 0.03 1.79 8.07 -2.38 -0.02 1.77 16 42 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -86.74 358.24 3.37 -83.37 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.22 Total: 10.07 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 5.70 Total: 28.73 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -4.69 Total: -94.69 kcal Atomic # 8 Polarization: -74.92 SS G_CDS: 0.11 Total: -74.81 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -86.74 3.37 -83.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761219038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.805 kcal (2) G-P(sol) polarization free energy of solvation -86.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds