Wall clock time and date at job start Fri Apr 10 2020 18:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 5 5 C 1.34234 * 116.99937 * 90.00606 * 4 2 1 6 6 O 1.20820 * 119.99748 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99724 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.67575 * 300.49322 * 7 5 4 9 9 C 1.53350 * 109.67132 * 179.97438 * 7 5 4 10 10 C 1.52917 * 108.67386 * 172.73664 * 9 7 5 11 11 N 1.45759 * 110.49109 * 50.75115 * 10 9 7 12 12 C 1.33349 * 124.10277 * 340.95157 * 11 10 9 13 13 O 1.21284 * 118.24019 * 182.17602 * 12 11 10 14 14 C 1.50174 * 123.51385 * 2.17552 * 12 11 10 15 15 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 16 16 O 1.21276 * 120.00180 * 114.99950 * 15 2 1 17 17 N 1.34778 * 119.99817 * 295.00053 * 15 2 1 18 18 C 1.46502 * 120.00356 * 359.97438 * 17 15 2 19 19 C 1.46510 * 119.99810 * 179.97438 * 17 15 2 20 20 C 1.50700 * 109.47088 * 89.99667 * 19 17 15 21 21 H 1.08002 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.37870 * 120.00259 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00382 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99861 * 0.02562 * 22 20 19 25 25 H 1.48509 * 109.47083 * 90.00193 * 24 22 20 26 26 H 1.48493 * 109.47486 * 210.00092 * 24 22 20 27 27 H 1.48500 * 109.47098 * 330.00452 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08998 * 109.60467 * 292.48997 * 9 7 5 32 32 H 1.08994 * 109.60323 * 52.98011 * 9 7 5 33 33 H 1.08999 * 109.30312 * 171.06743 * 10 9 7 34 34 H 1.09007 * 109.30240 * 290.65050 * 10 9 7 35 35 H 0.96996 * 117.94347 * 160.92373 * 11 10 9 36 36 H 1.08999 * 109.41387 * 222.31977 * 14 12 11 37 37 H 1.08997 * 109.38538 * 102.57536 * 14 12 11 38 38 H 1.08999 * 109.46601 * 90.00278 * 18 17 15 39 39 H 1.09000 * 109.46861 * 210.00048 * 18 17 15 40 40 H 1.09002 * 109.46766 * 330.00032 * 18 17 15 41 41 H 1.08994 * 109.47027 * 209.99740 * 19 17 15 42 42 H 1.09002 * 109.47025 * 330.00346 * 19 17 15 43 43 H 0.97002 * 120.00242 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9976 1.2517 -2.2505 7 6 2.7194 -0.5771 -3.5490 8 1 3.6845 -1.0488 -3.3645 9 6 2.8655 0.4876 -4.6430 10 6 3.5444 -0.1478 -5.8570 11 7 2.8677 -1.3833 -6.2316 12 6 2.0626 -2.0703 -5.4204 13 8 1.5858 -3.1079 -5.8291 14 6 1.7149 -1.6282 -4.0280 15 6 2.0323 -0.7104 1.2305 16 8 2.6529 -1.7466 1.1216 17 7 1.7918 -0.1941 2.4520 18 6 1.0426 1.0580 2.5836 19 6 2.2796 -0.8851 3.6483 20 6 3.6613 -0.3879 3.9872 21 1 4.1291 0.3675 3.3733 22 6 4.3278 -0.8966 5.0817 23 7 5.5333 -0.4623 5.3778 24 14 3.5185 -2.2026 6.1441 25 1 3.8621 -3.5493 5.6208 26 1 4.0050 -2.0756 7.5413 27 1 2.0448 -2.0213 6.1146 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8804 0.8577 -4.9270 32 1 3.4754 1.3114 -4.2725 33 1 3.5111 0.5493 -6.6943 34 1 4.5836 -0.3693 -5.6138 35 1 3.0117 -1.7269 -7.1271 36 1 1.7424 -2.4872 -3.3576 37 1 0.7128 -1.1994 -4.0242 38 1 -0.0215 0.8374 2.6678 39 1 1.3754 1.5884 3.4758 40 1 1.2166 1.6795 1.7052 41 1 1.6070 -0.6859 4.4825 42 1 2.3159 -1.9579 3.4588 43 1 6.0021 -0.8200 6.1480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761219039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:25 Heat of formation + Delta-G solvation = -152.061469 kcal Electronic energy + Delta-G solvation = -26421.916333 eV Core-core repulsion = 22467.602338 eV Total energy + Delta-G solvation = -3954.313995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.25357 -40.26027 -39.10996 -37.04998 -36.29718 -35.08506 -33.75226 -32.82574 -31.66819 -30.08790 -28.37032 -26.42790 -26.09648 -24.57599 -23.67887 -22.18287 -20.77568 -19.64182 -18.94790 -18.13438 -17.70366 -17.00462 -16.87649 -16.64423 -16.14811 -15.77853 -15.62166 -15.14411 -14.87985 -14.69576 -14.41721 -13.92872 -13.75923 -13.55977 -13.47171 -12.99999 -12.48862 -12.45088 -12.32424 -12.25076 -12.19508 -11.92823 -11.64020 -11.56581 -11.51524 -11.45115 -11.01390 -10.86930 -10.77405 -10.56638 -10.19558 -10.09265 -9.59685 -9.50082 -9.07636 -8.63374 -7.84530 -6.13053 -4.12835 1.96821 2.28447 2.29935 2.87070 3.12368 3.26551 3.32359 3.34491 3.66363 4.01784 4.15684 4.25680 4.27631 4.35691 4.64759 4.72051 4.74239 4.85016 4.89440 4.98010 5.09548 5.20015 5.20969 5.37258 5.41640 5.47939 5.54266 5.55069 5.63393 5.72820 5.89319 6.11688 6.28696 6.36820 6.59993 6.85270 6.90400 7.18400 7.53572 7.55931 7.83290 8.05571 8.40268 8.76924 8.89948 9.46268 11.00199 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.002923 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.152441 B = 9578.131459 C = 9819.836941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.108 0.892 4 O -0.322 6.322 5 C 0.468 3.532 6 O -0.505 6.505 7 C -0.084 4.084 8 H 0.121 0.879 9 C -0.122 4.122 10 C 0.110 3.890 11 N -0.722 5.722 12 C 0.526 3.474 13 O -0.551 6.551 14 C -0.127 4.127 15 C 0.510 3.490 16 O -0.517 6.517 17 N -0.591 5.591 18 C 0.076 3.924 19 C 0.217 3.783 20 C -0.533 4.533 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.265 1.265 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 4.819 -20.137 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.126 0.874 4 O -0.237 6.237 5 C 0.311 3.689 6 O -0.393 6.393 7 C -0.103 4.103 8 H 0.139 0.861 9 C -0.160 4.160 10 C -0.014 4.014 11 N -0.375 5.375 12 C 0.313 3.687 13 O -0.429 6.429 14 C -0.167 4.167 15 C 0.295 3.705 16 O -0.393 6.393 17 N -0.325 5.325 18 C -0.068 4.068 19 C 0.097 3.903 20 C -0.571 4.571 21 H 0.093 0.907 22 C -0.129 4.129 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.001 4.140 -19.959 22.283 hybrid contribution -0.089 -0.358 0.461 0.590 sum -9.090 3.782 -19.498 21.843 Atomic orbital electron populations 1.22290 0.92223 1.04115 1.04155 1.22624 0.95762 0.97681 0.82744 0.87426 1.86614 1.76221 1.41365 1.19460 1.23442 0.74302 0.85821 0.85371 1.90657 1.47911 1.16397 1.84308 1.21170 1.01856 0.97311 0.89982 0.86068 1.21840 1.03598 0.97600 0.92977 1.21446 0.96387 0.85576 0.97967 1.45512 1.48421 1.26178 1.17405 1.19942 0.77947 0.83436 0.87386 1.90794 1.52717 1.23840 1.75589 1.21666 1.00281 1.00661 0.94076 1.19770 0.80997 0.85930 0.83808 1.90712 1.39373 1.23449 1.85728 1.47739 1.54306 1.24057 1.06352 1.21879 0.95180 0.86457 1.03281 1.19729 0.95558 0.93701 0.81318 1.21307 0.99152 1.24314 1.12348 0.90739 1.24853 0.94661 0.96271 0.97165 1.69892 1.12292 1.43244 1.27981 0.86841 0.80116 0.82801 0.79877 1.19811 1.21008 1.19015 0.91202 0.90869 0.89228 0.89804 0.88178 0.89616 0.90899 0.76317 0.86178 0.87531 0.92982 0.90038 0.92026 0.94803 0.94330 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.27 37.16 0.34 -1.65 16 2 C 0.07 1.09 2.16 -27.88 -0.06 1.02 16 3 H 0.11 1.61 6.14 -51.93 -0.32 1.29 16 4 O -0.32 -4.92 9.37 -45.90 -0.43 -5.35 16 5 C 0.47 5.85 7.20 36.00 0.26 6.11 16 6 O -0.50 -6.97 15.12 -18.75 -0.28 -7.26 16 7 C -0.08 -0.74 2.71 -91.55 -0.25 -0.99 16 8 H 0.12 1.00 8.13 -51.93 -0.42 0.57 16 9 C -0.12 -0.78 4.70 -26.59 -0.13 -0.91 16 10 C 0.11 0.49 7.17 -4.48 -0.03 0.46 16 11 N -0.72 -4.91 5.45 -61.39 -0.33 -5.24 16 12 C 0.53 5.31 7.71 -11.87 -0.09 5.21 16 13 O -0.55 -7.92 17.78 5.55 0.10 -7.82 16 14 C -0.13 -1.15 5.30 -28.10 -0.15 -1.30 16 15 C 0.51 10.38 7.10 -10.99 -0.08 10.31 16 16 O -0.52 -12.84 16.09 -14.05 -0.23 -13.07 16 17 N -0.59 -11.83 2.86 -182.95 -0.52 -12.36 16 18 C 0.08 1.09 8.92 59.85 0.53 1.63 16 19 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 20 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 21 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 23 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 24 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.91 5.12 -51.93 -0.27 0.65 16 31 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.10 0.64 7.90 -51.93 -0.41 0.23 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.40 2.29 8.80 -40.82 -0.36 1.93 16 36 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.11 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.05 0.60 7.02 -51.93 -0.36 0.23 16 39 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.06 0.76 6.08 -51.93 -0.32 0.44 16 41 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 42 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -37.91 355.28 -6.49 -44.41 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.15 Total: -0.27 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -0.11 Total: 11.63 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.08 Total: -44.21 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.84 Total: -33.49 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.91 -6.49 -44.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761219039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.652 kcal (2) G-P(sol) polarization free energy of solvation -37.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds