Wall clock time and date at job start Fri Apr 10 2020 18:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 5 5 C 1.34234 * 116.99937 * 90.00606 * 4 2 1 6 6 O 1.20820 * 119.99748 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99724 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.67575 * 300.49322 * 7 5 4 9 9 C 1.53350 * 109.67132 * 179.97438 * 7 5 4 10 10 C 1.52917 * 108.67386 * 172.73664 * 9 7 5 11 11 N 1.45759 * 110.49109 * 50.75115 * 10 9 7 12 12 C 1.33349 * 124.10277 * 340.95157 * 11 10 9 13 13 O 1.21284 * 118.24019 * 182.17602 * 12 11 10 14 14 C 1.50174 * 123.51385 * 2.17552 * 12 11 10 15 15 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 16 16 O 1.21276 * 120.00180 * 114.99950 * 15 2 1 17 17 N 1.34778 * 119.99817 * 295.00053 * 15 2 1 18 18 C 1.46502 * 120.00356 * 359.97438 * 17 15 2 19 19 C 1.46510 * 119.99810 * 179.97438 * 17 15 2 20 20 C 1.50700 * 109.47088 * 89.99667 * 19 17 15 21 21 H 1.08002 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.37870 * 120.00259 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00382 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99861 * 0.02562 * 22 20 19 25 25 H 1.48509 * 109.47083 * 90.00193 * 24 22 20 26 26 H 1.48493 * 109.47486 * 210.00092 * 24 22 20 27 27 H 1.48500 * 109.47098 * 330.00452 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08998 * 109.60467 * 292.48997 * 9 7 5 32 32 H 1.08994 * 109.60323 * 52.98011 * 9 7 5 33 33 H 1.08999 * 109.30312 * 171.06743 * 10 9 7 34 34 H 1.09007 * 109.30240 * 290.65050 * 10 9 7 35 35 H 0.96996 * 117.94347 * 160.92373 * 11 10 9 36 36 H 1.08999 * 109.41387 * 222.31977 * 14 12 11 37 37 H 1.08997 * 109.38538 * 102.57536 * 14 12 11 38 38 H 1.08999 * 109.46601 * 90.00278 * 18 17 15 39 39 H 1.09000 * 109.46861 * 210.00048 * 18 17 15 40 40 H 1.09002 * 109.46766 * 330.00032 * 18 17 15 41 41 H 1.08994 * 109.47027 * 209.99740 * 19 17 15 42 42 H 1.09002 * 109.47025 * 330.00346 * 19 17 15 43 43 H 0.97002 * 120.00242 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9976 1.2517 -2.2505 7 6 2.7194 -0.5771 -3.5490 8 1 3.6845 -1.0488 -3.3645 9 6 2.8655 0.4876 -4.6430 10 6 3.5444 -0.1478 -5.8570 11 7 2.8677 -1.3833 -6.2316 12 6 2.0626 -2.0703 -5.4204 13 8 1.5858 -3.1079 -5.8291 14 6 1.7149 -1.6282 -4.0280 15 6 2.0323 -0.7104 1.2305 16 8 2.6529 -1.7466 1.1216 17 7 1.7918 -0.1941 2.4520 18 6 1.0426 1.0580 2.5836 19 6 2.2796 -0.8851 3.6483 20 6 3.6613 -0.3879 3.9872 21 1 4.1291 0.3675 3.3733 22 6 4.3278 -0.8966 5.0817 23 7 5.5333 -0.4623 5.3778 24 14 3.5185 -2.2026 6.1441 25 1 3.8621 -3.5493 5.6208 26 1 4.0050 -2.0756 7.5413 27 1 2.0448 -2.0213 6.1146 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8804 0.8577 -4.9270 32 1 3.4754 1.3114 -4.2725 33 1 3.5111 0.5493 -6.6943 34 1 4.5836 -0.3693 -5.6138 35 1 3.0117 -1.7269 -7.1271 36 1 1.7424 -2.4872 -3.3576 37 1 0.7128 -1.1994 -4.0242 38 1 -0.0215 0.8374 2.6678 39 1 1.3754 1.5884 3.4758 40 1 1.2166 1.6795 1.7052 41 1 1.6070 -0.6859 4.4825 42 1 2.3159 -1.9579 3.4588 43 1 6.0021 -0.8200 6.1480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761219039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:24 Heat of formation + Delta-G solvation = -180.383529 kcal Electronic energy + Delta-G solvation = -26423.144470 eV Core-core repulsion = 22467.602338 eV Total energy + Delta-G solvation = -3955.542132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.22855 -41.22942 -40.49873 -38.03540 -37.23436 -36.75226 -34.88763 -34.42404 -33.02011 -30.72775 -30.17437 -27.72653 -26.97541 -25.81286 -24.64994 -23.64742 -21.83213 -20.45372 -20.26038 -19.20892 -19.09467 -18.49952 -18.07501 -17.58082 -17.40973 -16.82873 -16.75074 -16.51270 -16.19543 -15.69174 -15.28971 -15.11224 -15.02645 -14.60720 -14.47154 -14.37745 -14.14549 -13.73999 -13.62787 -13.45056 -13.09210 -12.93421 -12.86966 -12.79871 -12.60733 -12.42328 -12.25615 -12.16825 -12.03532 -11.93685 -11.80301 -11.75768 -10.96895 -10.84407 -10.67857 -10.10202 -9.50887 -8.35280 -6.41405 0.96748 1.22519 1.34154 1.38128 1.46211 1.51688 1.57731 2.25531 2.30132 2.31154 2.99252 3.26157 3.36426 3.46810 3.55610 3.65237 3.72899 3.84381 4.01816 4.12059 4.31111 4.38037 4.51992 4.57397 4.61689 4.64971 4.67194 4.78197 4.80186 4.88186 4.90816 4.94360 5.09981 5.12636 5.28393 5.42502 5.51236 5.80408 6.19529 6.24802 6.45327 6.58192 6.60140 7.13142 7.14072 7.27233 8.81660 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.002923 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.152441 B = 9578.131459 C = 9819.836941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 H 0.114 0.886 4 O -0.343 6.343 5 C 0.468 3.532 6 O -0.516 6.516 7 C -0.079 4.079 8 H 0.127 0.873 9 C -0.118 4.118 10 C 0.111 3.889 11 N -0.709 5.709 12 C 0.526 3.474 13 O -0.602 6.602 14 C -0.122 4.122 15 C 0.500 3.500 16 O -0.576 6.576 17 N -0.597 5.597 18 C 0.067 3.933 19 C 0.224 3.776 20 C -0.541 4.541 21 H 0.027 0.973 22 C 0.011 3.989 23 N -0.945 5.945 24 Si 0.949 3.051 25 H -0.277 1.277 26 H -0.275 1.275 27 H -0.233 1.233 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.409 0.591 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.021 0.979 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 5.744 -20.916 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.132 0.868 4 O -0.259 6.259 5 C 0.311 3.689 6 O -0.405 6.405 7 C -0.098 4.098 8 H 0.144 0.856 9 C -0.156 4.156 10 C -0.012 4.012 11 N -0.360 5.360 12 C 0.313 3.687 13 O -0.484 6.484 14 C -0.162 4.162 15 C 0.287 3.713 16 O -0.455 6.455 17 N -0.329 5.329 18 C -0.075 4.075 19 C 0.102 3.898 20 C -0.579 4.579 21 H 0.046 0.954 22 C -0.187 4.187 23 N -0.585 5.585 24 Si 0.771 3.229 25 H -0.203 1.203 26 H -0.200 1.200 27 H -0.156 1.156 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.245 0.755 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.981 5.158 -20.765 24.049 hybrid contribution 0.623 -0.518 0.632 1.028 sum -10.358 4.640 -20.133 23.111 Atomic orbital electron populations 1.22302 0.88908 1.04604 1.06066 1.22553 0.98047 0.96583 0.80891 0.86835 1.86630 1.76749 1.42423 1.20058 1.24096 0.73636 0.85726 0.85397 1.90641 1.48494 1.16880 1.84468 1.21299 1.01636 0.97945 0.88911 0.85553 1.21877 1.04162 0.96928 0.92634 1.21671 0.96369 0.84873 0.98260 1.45504 1.46961 1.26334 1.17241 1.20033 0.77977 0.82944 0.87726 1.90772 1.55044 1.26082 1.76541 1.21583 1.00942 1.00252 0.93427 1.20695 0.79907 0.85456 0.85246 1.90669 1.41981 1.26156 1.86742 1.47825 1.54257 1.25482 1.05343 1.22245 0.96734 0.84349 1.04147 1.19432 0.93656 0.92990 0.83758 1.21552 1.01382 1.23277 1.11711 0.95425 1.25868 0.95205 0.98789 0.98840 1.70047 1.14233 1.45175 1.29047 0.85702 0.80848 0.78641 0.77685 1.20291 1.20048 1.15616 0.89247 0.91126 0.87256 0.89550 0.87755 0.86434 0.89450 0.75458 0.87508 0.86562 0.88823 0.90737 0.89734 0.92191 0.96046 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.27 71.98 0.67 -2.69 16 2 C 0.08 2.31 2.16 29.85 0.06 2.38 16 3 H 0.11 3.23 6.14 -2.39 -0.01 3.22 16 4 O -0.34 -10.41 9.37 -45.12 -0.42 -10.84 16 5 C 0.47 11.25 7.20 71.23 0.51 11.76 16 6 O -0.52 -13.42 15.12 21.98 0.33 -13.09 16 7 C -0.08 -1.30 2.71 -11.40 -0.03 -1.33 16 8 H 0.13 1.97 8.13 -2.39 -0.02 1.95 16 9 C -0.12 -1.22 4.70 30.68 0.14 -1.08 16 10 C 0.11 0.65 7.17 86.49 0.62 1.27 16 11 N -0.71 -8.27 5.45 -467.31 -2.55 -10.82 16 12 C 0.53 10.26 7.71 87.71 0.68 10.94 16 13 O -0.60 -17.49 17.78 -3.04 -0.05 -17.55 16 14 C -0.12 -2.15 5.30 29.71 0.16 -1.99 16 15 C 0.50 20.46 7.10 87.66 0.62 21.08 16 16 O -0.58 -29.61 16.09 15.73 0.25 -29.36 16 17 N -0.60 -23.52 2.86 -851.11 -2.43 -25.95 16 18 C 0.07 1.77 8.92 127.77 1.14 2.91 16 19 C 0.22 10.63 4.23 85.63 0.36 10.99 16 20 C -0.54 -31.56 9.94 25.60 0.25 -31.30 16 21 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 22 C 0.01 0.65 5.47 84.65 0.46 1.11 16 23 N -0.95 -59.51 13.96 21.44 0.30 -59.21 16 24 Si 0.95 43.76 27.47 68.60 1.88 45.64 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.23 -9.47 6.54 99.48 0.65 -8.82 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.80 5.12 -2.39 -0.01 1.79 16 31 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.10 1.06 7.90 -2.39 -0.02 1.04 16 33 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.41 3.89 8.80 -92.71 -0.82 3.07 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.12 1.79 8.09 -2.39 -0.02 1.77 16 38 H 0.09 1.74 7.02 -2.39 -0.02 1.73 16 39 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 40 H 0.08 1.85 6.08 -2.39 -0.01 1.83 16 41 H 0.06 2.54 7.13 -2.39 -0.02 2.53 16 42 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -87.55 355.28 3.14 -84.41 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.17 Total: 12.72 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 5.65 Total: 24.05 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -4.68 Total: -95.98 kcal Atomic # 8 Polarization: -70.94 SS G_CDS: 0.11 Total: -70.83 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -87.55 3.14 -84.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761219039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.973 kcal (2) G-P(sol) polarization free energy of solvation -87.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds