Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46834 * 2 1 4 4 O 1.45198 * 109.47091 * 239.99701 * 2 1 3 5 5 C 1.34230 * 116.99788 * 90.00224 * 4 2 1 6 6 O 1.20815 * 120.00223 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99548 * 179.97438 * 5 4 2 8 8 C 1.50707 * 112.85058 * 50.33791 * 7 5 4 9 9 N 1.34777 * 119.99542 * 309.66248 * 8 7 5 10 10 O 1.21277 * 120.00051 * 129.66774 * 8 7 5 11 11 C 1.53779 * 113.61828 * 279.13562 * 7 5 4 12 12 C 1.53955 * 87.02127 * 220.05033 * 11 7 5 13 13 C 1.53780 * 87.11223 * 25.36471 * 12 11 7 14 14 C 1.50697 * 109.46552 * 119.99695 * 2 1 3 15 15 O 1.21286 * 119.99880 * 106.66485 * 14 2 1 16 16 N 1.34777 * 120.00061 * 286.65589 * 14 2 1 17 17 C 1.46494 * 120.00077 * 5.12404 * 16 14 2 18 18 C 1.46508 * 119.99664 * 185.12470 * 16 14 2 19 19 C 1.50699 * 109.47068 * 270.00038 * 18 16 14 20 20 H 1.07996 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.37873 * 119.99844 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99996 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00106 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47225 * 90.00674 * 23 21 19 25 25 H 1.48506 * 109.47029 * 210.00317 * 23 21 19 26 26 H 1.48494 * 109.47044 * 330.00464 * 23 21 19 27 27 H 1.08999 * 109.47285 * 290.06926 * 1 2 3 28 28 H 1.09005 * 109.47107 * 50.07347 * 1 2 3 29 29 H 1.09001 * 109.47034 * 170.06650 * 1 2 3 30 30 H 0.96993 * 120.00101 * 359.97438 * 9 8 7 31 31 H 0.96999 * 119.99585 * 180.02562 * 9 8 7 32 32 H 1.09000 * 113.61784 * 334.57068 * 11 7 5 33 33 H 1.08998 * 113.61220 * 105.47384 * 11 7 5 34 34 H 1.08999 * 113.53886 * 270.81155 * 12 11 7 35 35 H 1.09003 * 113.74400 * 139.94416 * 12 11 7 36 36 H 1.09003 * 113.61310 * 220.09620 * 13 12 11 37 37 H 1.08997 * 113.69376 * 89.19401 * 13 12 11 38 38 H 1.08998 * 109.47150 * 265.08272 * 17 16 14 39 39 H 1.08996 * 109.47391 * 25.08250 * 17 16 14 40 40 H 1.09006 * 109.46991 * 145.08125 * 17 16 14 41 41 H 1.08999 * 109.47237 * 30.00598 * 18 16 14 42 42 H 1.09003 * 109.46612 * 150.00149 * 18 16 14 43 43 H 0.96995 * 120.00112 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9974 1.2516 -2.2506 7 6 2.7193 -0.5772 -3.5490 8 6 1.9221 -1.7931 -3.9455 9 7 1.6830 -2.7656 -3.0435 10 8 1.4959 -1.8966 -5.0761 11 6 4.2399 -0.8060 -3.5633 12 6 4.2109 -0.3690 -5.0393 13 6 2.9353 0.4199 -4.6998 14 6 2.0322 -0.7104 1.2305 15 8 2.5183 -1.8175 1.1357 16 7 1.9413 -0.1153 2.4364 17 6 1.2542 1.1718 2.5682 18 6 2.5298 -0.7557 3.6154 19 6 1.5071 -1.6539 4.2622 20 1 0.5177 -1.7388 3.8378 21 6 1.8343 -2.3663 5.3964 22 7 0.9419 -3.1505 5.9606 23 14 3.5455 -2.2188 6.1308 24 1 3.5655 -1.1124 7.1211 25 1 3.9067 -3.4922 6.8040 26 1 4.5247 -1.9346 5.0512 27 1 -0.3634 0.3526 0.9652 28 1 -0.3633 0.6596 -0.7881 29 1 -0.3633 -1.0123 -0.1773 30 1 2.0244 -2.6830 -2.1393 31 1 1.1703 -3.5484 -3.2987 32 1 4.7904 -0.1228 -2.9165 33 1 4.5260 -1.8481 -3.4211 34 1 4.0433 -1.1922 -5.7338 35 1 5.0514 0.2627 -5.3266 36 1 2.1695 0.3659 -5.4737 37 1 3.1268 1.4391 -4.3642 38 1 1.9832 1.9802 2.5125 39 1 0.5287 1.2806 1.7621 40 1 0.7394 1.2121 3.5282 41 1 3.3943 -1.3473 3.3141 42 1 2.8429 0.0092 4.3260 43 1 1.1720 -3.6514 6.7587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769120460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -124.644860 kcal Electronic energy + Delta-G solvation = -27089.292990 eV Core-core repulsion = 23136.167868 eV Total energy + Delta-G solvation = -3953.125122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68566 -40.11875 -39.02017 -37.57916 -36.42569 -35.11970 -33.86746 -32.88617 -31.82408 -28.50962 -28.06606 -26.38084 -26.10907 -24.52051 -22.93700 -22.33083 -21.36461 -19.47610 -18.96364 -18.54320 -17.40842 -17.08639 -17.01478 -16.54193 -16.28522 -15.83863 -15.53348 -15.23278 -14.76928 -14.59167 -14.31829 -13.93428 -13.83503 -13.31589 -12.98601 -12.82373 -12.64879 -12.51576 -12.41985 -12.28624 -11.88935 -11.85713 -11.67321 -11.47463 -11.33444 -10.99260 -10.89838 -10.86130 -10.60800 -10.59127 -10.18821 -10.15841 -9.85052 -9.62629 -9.13215 -8.66369 -7.88546 -6.15559 -4.15186 1.73720 2.01739 2.49611 3.03575 3.20053 3.21577 3.30197 3.33091 3.63349 3.82112 4.04287 4.33056 4.34332 4.46147 4.59239 4.65297 4.84849 4.93769 5.02280 5.17398 5.29750 5.30491 5.34478 5.50505 5.52740 5.57469 5.61080 5.71183 5.72040 5.95354 5.97848 6.13999 6.17228 6.53086 6.56978 6.82670 7.13257 7.15565 7.42094 7.51448 7.99320 8.01443 8.37033 8.70607 8.87452 9.43751 10.97656 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.003364 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.694468 B = 8320.294721 C = 8510.435849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.106 0.894 4 O -0.328 6.328 5 C 0.479 3.521 6 O -0.493 6.493 7 C -0.112 4.112 8 C 0.549 3.451 9 N -0.838 5.838 10 O -0.534 6.534 11 C -0.109 4.109 12 C -0.138 4.138 13 C -0.099 4.099 14 C 0.510 3.490 15 O -0.516 6.516 16 N -0.590 5.590 17 C 0.064 3.936 18 C 0.218 3.782 19 C -0.531 4.531 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.875 3.125 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.264 1.264 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.416 0.584 31 H 0.406 0.594 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.029 0.971 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 8.332 -17.616 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 H 0.124 0.876 4 O -0.244 6.244 5 C 0.320 3.680 6 O -0.380 6.380 7 C -0.116 4.116 8 C 0.331 3.669 9 N -0.403 5.403 10 O -0.410 6.410 11 C -0.147 4.147 12 C -0.176 4.176 13 C -0.137 4.137 14 C 0.295 3.705 15 O -0.391 6.391 16 N -0.323 5.323 17 C -0.079 4.079 18 C 0.098 3.902 19 C -0.569 4.569 20 H 0.094 0.906 21 C -0.129 4.129 22 N -0.534 5.534 23 Si 0.701 3.299 24 H -0.201 1.201 25 H -0.209 1.209 26 H -0.189 1.189 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.249 0.751 31 H 0.237 0.763 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.107 8.059 -18.178 20.304 hybrid contribution 0.513 -0.146 1.215 1.327 sum 4.620 7.914 -16.963 19.280 Atomic orbital electron populations 1.22348 0.91979 1.04389 1.04367 1.22679 0.96141 0.97416 0.82334 0.87624 1.86493 1.76453 1.41715 1.19713 1.23049 0.74190 0.85978 0.84744 1.90649 1.47159 1.16208 1.83960 1.22240 0.99039 0.97716 0.92650 1.19265 0.79290 0.83230 0.85098 1.43925 1.57551 1.22814 1.16028 1.90747 1.51415 1.78914 1.19967 1.22965 0.89087 1.03993 0.98639 1.22910 0.98209 1.00738 0.95699 1.22870 0.98849 0.97400 0.94566 1.19744 0.80614 0.86440 0.83729 1.90702 1.44452 1.18378 1.85617 1.47734 1.55456 1.21298 1.07858 1.22049 0.96988 0.84969 1.03933 1.19725 0.95226 0.93293 0.81970 1.21285 0.99642 1.25555 1.10443 0.90649 1.24852 0.97012 0.94591 0.96494 1.69888 1.34305 1.28202 1.20959 0.86870 0.85222 0.78021 0.79760 1.20051 1.20859 1.18873 0.88747 0.91074 0.90419 0.75125 0.76264 0.88125 0.89385 0.89066 0.89934 0.88895 0.87752 0.93151 0.91099 0.90043 0.94063 0.95278 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.09 37.16 0.34 -1.89 16 2 C 0.07 1.07 2.16 -27.88 -0.06 1.01 16 3 H 0.11 1.43 6.74 -51.93 -0.35 1.08 16 4 O -0.33 -4.68 7.38 -45.80 -0.34 -5.02 16 5 C 0.48 6.30 6.98 36.00 0.25 6.55 16 6 O -0.49 -7.13 15.13 -18.74 -0.28 -7.41 16 7 C -0.11 -1.24 1.20 -155.99 -0.19 -1.43 16 8 C 0.55 6.67 6.90 -10.98 -0.08 6.59 16 9 N -0.84 -8.81 8.65 31.22 0.27 -8.54 16 10 O -0.53 -7.80 16.67 5.56 0.09 -7.70 16 11 C -0.11 -0.96 7.22 -25.83 -0.19 -1.15 16 12 C -0.14 -1.10 7.76 -25.83 -0.20 -1.30 16 13 C -0.10 -0.97 6.78 -25.91 -0.18 -1.14 16 14 C 0.51 9.82 7.00 -10.99 -0.08 9.74 16 15 O -0.52 -11.92 16.19 -13.72 -0.22 -12.14 16 16 N -0.59 -11.41 2.86 -182.95 -0.52 -11.94 16 17 C 0.06 0.91 9.86 59.84 0.59 1.50 16 18 C 0.22 5.07 4.21 -5.19 -0.02 5.05 16 19 C -0.53 -14.66 9.94 -34.44 -0.34 -15.01 16 20 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 23 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 27 H 0.09 1.15 5.50 -51.93 -0.29 0.87 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.42 4.62 6.94 -40.82 -0.28 4.34 16 31 H 0.41 3.61 8.93 -40.82 -0.36 3.24 16 32 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.97 7.41 -51.93 -0.38 0.59 16 37 H 0.10 0.98 7.45 -51.93 -0.39 0.59 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.83 4.11 -51.93 -0.21 0.62 16 40 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 41 H 0.04 1.03 6.56 -51.93 -0.34 0.69 16 42 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -34.76 356.12 -5.74 -40.50 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.96 Total: 6.39 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -0.25 Total: 10.49 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.52 Total: -46.60 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.75 Total: -32.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.76 -5.74 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769120460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.146 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds