Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46834 * 2 1 4 4 O 1.45198 * 109.47091 * 239.99701 * 2 1 3 5 5 C 1.34230 * 116.99788 * 90.00224 * 4 2 1 6 6 O 1.20815 * 120.00223 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99548 * 179.97438 * 5 4 2 8 8 C 1.50707 * 112.85058 * 50.33791 * 7 5 4 9 9 N 1.34777 * 119.99542 * 309.66248 * 8 7 5 10 10 O 1.21277 * 120.00051 * 129.66774 * 8 7 5 11 11 C 1.53779 * 113.61828 * 279.13562 * 7 5 4 12 12 C 1.53955 * 87.02127 * 220.05033 * 11 7 5 13 13 C 1.53780 * 87.11223 * 25.36471 * 12 11 7 14 14 C 1.50697 * 109.46552 * 119.99695 * 2 1 3 15 15 O 1.21286 * 119.99880 * 106.66485 * 14 2 1 16 16 N 1.34777 * 120.00061 * 286.65589 * 14 2 1 17 17 C 1.46494 * 120.00077 * 5.12404 * 16 14 2 18 18 C 1.46508 * 119.99664 * 185.12470 * 16 14 2 19 19 C 1.50699 * 109.47068 * 270.00038 * 18 16 14 20 20 H 1.07996 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.37873 * 119.99844 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99996 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00106 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47225 * 90.00674 * 23 21 19 25 25 H 1.48506 * 109.47029 * 210.00317 * 23 21 19 26 26 H 1.48494 * 109.47044 * 330.00464 * 23 21 19 27 27 H 1.08999 * 109.47285 * 290.06926 * 1 2 3 28 28 H 1.09005 * 109.47107 * 50.07347 * 1 2 3 29 29 H 1.09001 * 109.47034 * 170.06650 * 1 2 3 30 30 H 0.96993 * 120.00101 * 359.97438 * 9 8 7 31 31 H 0.96999 * 119.99585 * 180.02562 * 9 8 7 32 32 H 1.09000 * 113.61784 * 334.57068 * 11 7 5 33 33 H 1.08998 * 113.61220 * 105.47384 * 11 7 5 34 34 H 1.08999 * 113.53886 * 270.81155 * 12 11 7 35 35 H 1.09003 * 113.74400 * 139.94416 * 12 11 7 36 36 H 1.09003 * 113.61310 * 220.09620 * 13 12 11 37 37 H 1.08997 * 113.69376 * 89.19401 * 13 12 11 38 38 H 1.08998 * 109.47150 * 265.08272 * 17 16 14 39 39 H 1.08996 * 109.47391 * 25.08250 * 17 16 14 40 40 H 1.09006 * 109.46991 * 145.08125 * 17 16 14 41 41 H 1.08999 * 109.47237 * 30.00598 * 18 16 14 42 42 H 1.09003 * 109.46612 * 150.00149 * 18 16 14 43 43 H 0.96995 * 120.00112 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9974 1.2516 -2.2506 7 6 2.7193 -0.5772 -3.5490 8 6 1.9221 -1.7931 -3.9455 9 7 1.6830 -2.7656 -3.0435 10 8 1.4959 -1.8966 -5.0761 11 6 4.2399 -0.8060 -3.5633 12 6 4.2109 -0.3690 -5.0393 13 6 2.9353 0.4199 -4.6998 14 6 2.0322 -0.7104 1.2305 15 8 2.5183 -1.8175 1.1357 16 7 1.9413 -0.1153 2.4364 17 6 1.2542 1.1718 2.5682 18 6 2.5298 -0.7557 3.6154 19 6 1.5071 -1.6539 4.2622 20 1 0.5177 -1.7388 3.8378 21 6 1.8343 -2.3663 5.3964 22 7 0.9419 -3.1505 5.9606 23 14 3.5455 -2.2188 6.1308 24 1 3.5655 -1.1124 7.1211 25 1 3.9067 -3.4922 6.8040 26 1 4.5247 -1.9346 5.0512 27 1 -0.3634 0.3526 0.9652 28 1 -0.3633 0.6596 -0.7881 29 1 -0.3633 -1.0123 -0.1773 30 1 2.0244 -2.6830 -2.1393 31 1 1.1703 -3.5484 -3.2987 32 1 4.7904 -0.1228 -2.9165 33 1 4.5260 -1.8481 -3.4211 34 1 4.0433 -1.1922 -5.7338 35 1 5.0514 0.2627 -5.3266 36 1 2.1695 0.3659 -5.4737 37 1 3.1268 1.4391 -4.3642 38 1 1.9832 1.9802 2.5125 39 1 0.5287 1.2806 1.7621 40 1 0.7394 1.2121 3.5282 41 1 3.3943 -1.3473 3.3141 42 1 2.8429 0.0092 4.3260 43 1 1.1720 -3.6514 6.7587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769120460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -149.742977 kcal Electronic energy + Delta-G solvation = -27090.381326 eV Core-core repulsion = 23136.167868 eV Total energy + Delta-G solvation = -3954.213458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.66436 -41.29061 -40.33180 -38.53658 -37.49380 -36.71958 -34.90737 -34.73548 -33.22628 -30.23937 -28.99299 -27.70169 -26.83722 -25.87808 -24.41088 -23.38690 -22.47787 -20.56305 -20.20697 -19.55945 -19.13106 -18.45439 -18.09504 -17.74067 -17.46229 -17.03146 -16.86051 -16.27808 -16.06045 -16.01617 -15.51618 -15.19691 -14.85544 -14.75649 -14.34534 -14.11567 -13.79292 -13.68765 -13.55799 -13.51226 -13.34130 -13.13579 -12.92144 -12.71257 -12.55857 -12.26697 -12.09837 -12.04071 -11.97531 -11.74421 -11.61059 -11.50557 -11.13449 -10.80893 -10.79301 -10.66512 -9.49143 -8.32441 -6.37861 0.73377 0.95009 1.34444 1.38558 1.47455 1.49256 1.55904 2.28776 2.31742 2.32774 2.95942 3.01709 3.27241 3.32473 3.47389 3.67575 3.73310 3.76702 3.79638 4.18736 4.28259 4.47852 4.55265 4.62216 4.62828 4.64298 4.75751 4.82967 4.84866 4.92469 4.93320 5.01610 5.09036 5.12410 5.30845 5.44393 5.52496 5.70915 6.21509 6.22012 6.35107 6.53856 6.64075 7.08407 7.15225 7.29236 8.84317 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.003364 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.694468 B = 8320.294721 C = 8510.435849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 H 0.126 0.874 4 O -0.336 6.336 5 C 0.482 3.518 6 O -0.505 6.505 7 C -0.119 4.119 8 C 0.548 3.452 9 N -0.830 5.830 10 O -0.562 6.562 11 C -0.106 4.106 12 C -0.126 4.126 13 C -0.099 4.099 14 C 0.503 3.497 15 O -0.565 6.565 16 N -0.597 5.597 17 C 0.057 3.943 18 C 0.225 3.775 19 C -0.536 4.536 20 H 0.031 0.969 21 C 0.011 3.989 22 N -0.945 5.945 23 Si 0.947 3.053 24 H -0.252 1.252 25 H -0.284 1.284 26 H -0.252 1.252 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.415 0.585 31 H 0.413 0.587 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.055 0.945 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 10.358 -18.191 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 H 0.144 0.856 4 O -0.251 6.251 5 C 0.324 3.676 6 O -0.392 6.392 7 C -0.123 4.123 8 C 0.331 3.669 9 N -0.394 5.394 10 O -0.440 6.440 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.137 4.137 14 C 0.290 3.710 15 O -0.444 6.444 16 N -0.329 5.329 17 C -0.085 4.085 18 C 0.103 3.897 19 C -0.574 4.574 20 H 0.049 0.951 21 C -0.187 4.187 22 N -0.585 5.585 23 Si 0.769 3.231 24 H -0.177 1.177 25 H -0.210 1.210 26 H -0.176 1.176 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.247 0.753 31 H 0.245 0.755 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.733 10.129 -18.759 22.076 hybrid contribution -0.105 -0.795 1.357 1.576 sum 5.628 9.334 -17.402 20.533 Atomic orbital electron populations 1.22351 0.90484 1.04364 1.05480 1.22550 0.97008 0.97323 0.80695 0.85603 1.86515 1.76627 1.42126 1.19869 1.23409 0.73601 0.85869 0.84727 1.90637 1.47741 1.16667 1.84141 1.22435 1.00283 0.97632 0.91968 1.19449 0.79022 0.83627 0.84775 1.43900 1.57032 1.22823 1.15644 1.90734 1.52644 1.79609 1.21062 1.23064 0.87148 1.04696 0.99466 1.22863 0.98034 1.00501 0.94944 1.22921 0.99515 0.97572 0.93652 1.20526 0.79581 0.86013 0.84922 1.90669 1.46607 1.20617 1.86515 1.47803 1.55492 1.22715 1.06926 1.22359 0.98145 0.83308 1.04659 1.19418 0.93432 0.93271 0.83602 1.21526 0.98894 1.26469 1.10529 0.95052 1.25838 1.01678 0.94075 0.97075 1.70048 1.36928 1.29683 1.21855 0.85729 0.79459 0.78549 0.79336 1.17668 1.21007 1.17635 0.88121 0.88996 0.91479 0.75256 0.75480 0.87170 0.88871 0.89579 0.87517 0.89911 0.87169 0.89873 0.88587 0.90729 0.95784 0.92756 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.09 71.98 0.65 -3.42 16 2 C 0.08 2.30 2.16 29.85 0.06 2.36 16 3 H 0.13 3.03 6.74 -2.39 -0.02 3.02 16 4 O -0.34 -9.19 7.38 -45.16 -0.33 -9.52 16 5 C 0.48 11.88 6.98 71.24 0.50 12.38 16 6 O -0.50 -13.46 15.13 22.00 0.33 -13.13 16 7 C -0.12 -2.48 1.20 -53.14 -0.06 -2.54 16 8 C 0.55 12.97 6.90 87.66 0.60 13.57 16 9 N -0.83 -17.16 8.65 -173.53 -1.50 -18.67 16 10 O -0.56 -16.21 16.67 -3.02 -0.05 -16.26 16 11 C -0.11 -1.67 7.22 31.18 0.23 -1.44 16 12 C -0.13 -1.74 7.76 31.18 0.24 -1.50 16 13 C -0.10 -1.77 6.78 31.12 0.21 -1.56 16 14 C 0.50 19.10 7.00 87.66 0.61 19.72 16 15 O -0.57 -26.53 16.19 15.38 0.25 -26.28 16 16 N -0.60 -22.50 2.86 -851.13 -2.43 -24.93 16 17 C 0.06 1.47 9.86 127.77 1.26 2.73 16 18 C 0.22 10.30 4.21 85.63 0.36 10.66 16 19 C -0.54 -30.22 9.94 25.60 0.25 -29.97 16 20 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 21 C 0.01 0.65 5.47 84.65 0.46 1.12 16 22 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 23 Si 0.95 42.65 27.47 68.60 1.88 44.53 16 24 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 27 H 0.10 2.27 5.50 -2.39 -0.01 2.26 16 28 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.42 9.14 6.94 -92.71 -0.64 8.50 16 31 H 0.41 7.27 8.93 -92.71 -0.83 6.44 16 32 H 0.11 1.55 8.09 -2.39 -0.02 1.53 16 33 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.66 7.41 -2.39 -0.02 1.65 16 37 H 0.11 1.85 7.45 -2.39 -0.02 1.83 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 1.99 4.11 -2.39 -0.01 1.98 16 40 H 0.07 2.06 8.11 -2.38 -0.02 2.04 16 41 H 0.02 1.19 6.56 -2.39 -0.02 1.18 16 42 H 0.05 2.23 7.50 -2.39 -0.02 2.21 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -77.46 356.12 3.37 -74.09 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.46 Total: 26.04 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 5.39 Total: 22.12 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -3.63 Total: -101.58 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: 0.20 Total: -65.20 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -77.46 3.37 -74.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769120460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.655 kcal (2) G-P(sol) polarization free energy of solvation -77.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds