Wall clock time and date at job start Fri Apr 10 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46778 * 2 1 4 4 O 1.45200 * 109.47503 * 120.00037 * 2 1 3 5 5 C 1.34227 * 116.99916 * 270.00011 * 4 2 1 6 6 O 1.20820 * 120.00301 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99806 * 179.97438 * 5 4 2 8 8 H 1.08996 * 110.43442 * 298.91284 * 7 5 4 9 9 C 1.54630 * 110.48323 * 176.22961 * 7 5 4 10 10 C 1.54482 * 101.76162 * 266.11807 * 9 7 5 11 11 N 1.46764 * 105.47653 * 334.58833 * 10 9 7 12 12 C 1.46501 * 124.34961 * 196.99582 * 11 10 9 13 13 C 1.34414 * 111.29998 * 17.01504 * 11 10 9 14 14 O 1.21280 * 124.94214 * 179.63382 * 13 11 10 15 15 C 1.50704 * 109.46957 * 239.99986 * 2 1 3 16 16 O 1.21273 * 120.00089 * 248.56343 * 15 2 1 17 17 N 1.34777 * 119.99655 * 68.56688 * 15 2 1 18 18 C 1.46504 * 120.00430 * 4.58414 * 17 15 2 19 19 C 1.46498 * 119.99947 * 184.58369 * 17 15 2 20 20 C 1.50704 * 109.47218 * 89.99925 * 19 17 15 21 21 H 1.07996 * 119.99871 * 0.02562 * 20 19 17 22 22 C 1.37874 * 119.99912 * 180.02562 * 20 19 17 23 23 N 1.31514 * 120.00344 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47412 * 89.99743 * 24 22 20 26 26 H 1.48506 * 109.47107 * 209.99910 * 24 22 20 27 27 H 1.48507 * 109.47041 * 329.99534 * 24 22 20 28 28 H 1.08998 * 109.47228 * 187.15374 * 1 2 3 29 29 H 1.09001 * 109.47058 * 307.14805 * 1 2 3 30 30 H 1.08993 * 109.47585 * 67.15022 * 1 2 3 31 31 H 1.08995 * 110.97464 * 24.23968 * 9 7 5 32 32 H 1.08997 * 110.96571 * 148.00536 * 9 7 5 33 33 H 1.09004 * 110.24556 * 215.58545 * 10 9 7 34 34 H 1.09007 * 110.24363 * 93.58735 * 10 9 7 35 35 H 1.08989 * 109.47379 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47062 * 300.04878 * 12 11 10 37 37 H 1.09000 * 109.47485 * 60.04407 * 12 11 10 38 38 H 1.08998 * 109.47216 * 86.11577 * 18 17 15 39 39 H 1.08997 * 109.47475 * 206.12169 * 18 17 15 40 40 H 1.09002 * 109.46954 * 326.11916 * 18 17 15 41 41 H 1.08997 * 109.47118 * 210.00083 * 19 17 15 42 42 H 1.08997 * 109.46919 * 329.99776 * 19 17 15 43 43 H 0.96997 * 120.00513 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 0.0640 2.2810 6 8 1.9974 1.2517 2.2506 7 6 2.7184 -0.5772 3.5494 8 1 2.0105 -1.3272 3.9022 9 6 2.9633 0.4941 4.6372 10 6 4.4649 0.8014 4.4442 11 7 5.0379 -0.4081 3.8419 12 6 6.4700 -0.7150 3.8065 13 6 4.0800 -1.1978 3.3267 14 8 4.2784 -2.2545 2.7655 15 6 2.0323 -0.7104 -1.2305 16 8 2.5963 -1.7789 -1.1260 17 7 1.8547 -0.1582 -2.4471 18 6 1.2643 1.1773 -2.5663 19 6 2.2522 -0.8934 -3.6503 20 6 1.0931 -1.7248 -4.1368 21 1 0.1543 -1.7069 -3.6033 22 6 1.2314 -2.5082 -5.2629 23 7 2.3745 -2.5295 -5.9128 24 14 -0.2055 -3.5381 -5.8663 25 1 -1.0176 -2.7430 -6.8221 26 1 0.3083 -4.7546 -6.5457 27 1 -1.0493 -3.9356 -4.7107 28 1 -0.3633 -1.0196 0.1280 29 1 -0.3633 0.6206 0.8191 30 1 -0.3634 0.3990 -0.9469 31 1 2.3569 1.3812 4.4547 32 1 2.7725 0.0908 5.6317 33 1 4.9354 1.0029 5.4065 34 1 4.5927 1.6527 3.7754 35 1 6.6247 -1.6694 3.3036 36 1 6.9967 0.0709 3.2651 37 1 6.8541 -0.7748 4.8248 38 1 2.0470 1.9302 -2.4733 39 1 0.7798 1.2750 -3.5378 40 1 0.5269 1.3203 -1.7765 41 1 2.5444 -0.1874 -4.4275 42 1 3.0939 -1.5451 -3.4164 43 1 2.4719 -3.0809 -6.7049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772510519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:42 Heat of formation + Delta-G solvation = -132.823479 kcal Electronic energy + Delta-G solvation = -26831.537578 eV Core-core repulsion = 22878.057804 eV Total energy + Delta-G solvation = -3953.479773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44215 -40.06039 -38.83927 -36.91525 -36.21995 -34.88050 -33.32036 -32.81428 -31.57026 -28.53886 -27.69840 -27.07069 -26.13759 -24.62554 -23.50675 -22.19992 -20.97013 -19.89980 -18.86381 -18.34058 -17.10464 -16.93602 -16.53503 -16.27765 -16.19953 -15.56779 -15.32675 -14.93763 -14.56965 -14.34143 -14.10836 -13.94895 -13.50665 -13.27444 -13.12283 -12.94119 -12.75852 -12.51362 -12.44298 -12.15697 -12.05596 -11.92056 -11.67680 -11.61899 -11.33946 -11.19132 -10.90057 -10.75780 -10.71713 -10.54410 -10.15368 -10.04646 -9.63538 -9.02602 -8.87292 -8.43463 -7.69155 -6.04175 -4.09472 1.78608 2.15082 2.57957 2.75133 3.27367 3.31001 3.38078 3.43008 3.83910 3.87320 3.98003 4.37229 4.44505 4.58122 4.67882 4.86000 4.98615 5.00059 5.03019 5.09763 5.11387 5.20695 5.30343 5.40759 5.45460 5.49059 5.55531 5.65505 5.73578 5.87000 6.06713 6.16583 6.27041 6.33345 6.73130 7.00336 7.42859 7.47864 7.57011 7.88458 7.91808 8.21663 8.31756 8.86964 9.02040 9.55584 11.03993 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.003284 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.914714 B = 8523.821883 C = 9020.541806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.103 0.897 4 O -0.311 6.311 5 C 0.480 3.520 6 O -0.502 6.502 7 C -0.122 4.122 8 H 0.146 0.854 9 C -0.121 4.121 10 C 0.100 3.900 11 N -0.625 5.625 12 C 0.094 3.906 13 C 0.524 3.476 14 O -0.491 6.491 15 C 0.507 3.493 16 O -0.513 6.513 17 N -0.597 5.597 18 C 0.068 3.932 19 C 0.246 3.754 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 11.572 22.606 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.121 0.879 4 O -0.225 6.225 5 C 0.322 3.678 6 O -0.391 6.391 7 C -0.144 4.144 8 H 0.163 0.837 9 C -0.158 4.158 10 C -0.023 4.023 11 N -0.361 5.361 12 C -0.047 4.047 13 C 0.309 3.691 14 O -0.363 6.363 15 C 0.291 3.709 16 O -0.388 6.388 17 N -0.331 5.331 18 C -0.076 4.076 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.933 10.649 22.103 24.611 hybrid contribution -0.834 -0.324 -0.481 1.016 sum 1.099 10.325 21.622 23.987 Atomic orbital electron populations 1.22305 0.92036 1.04307 1.04101 1.22718 0.96075 0.97286 0.82785 0.87921 1.86712 1.75672 1.40857 1.19273 1.22723 0.74405 0.85523 0.85182 1.90630 1.48494 1.16004 1.83935 1.21804 0.98696 1.01293 0.92651 0.83651 1.22699 0.96225 0.99417 0.97491 1.22160 0.93389 0.87604 0.99155 1.48104 1.07070 1.22075 1.58854 1.21600 0.78258 1.02806 1.02057 1.20098 0.85985 0.84462 0.78588 1.90853 1.84031 1.21207 1.40208 1.19749 0.81104 0.86281 0.83796 1.90741 1.41133 1.21276 1.85603 1.48057 1.61003 1.17246 1.06798 1.21965 0.97811 0.84243 1.03568 1.19357 0.96815 0.91634 0.79438 1.21429 0.98405 1.26368 1.10604 0.92336 1.24941 0.96103 0.96583 0.96459 1.69931 1.24069 1.40265 1.18981 0.86476 0.82230 0.79813 0.78784 1.20638 1.21047 1.19834 0.90512 0.91231 0.88837 0.86982 0.88407 0.89626 0.90530 0.89559 0.91817 0.91838 0.93532 0.90121 0.91729 0.94667 0.93605 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.14 37.16 0.34 -2.10 16 2 C 0.07 1.22 2.16 -27.88 -0.06 1.16 16 3 H 0.10 1.61 6.73 -51.93 -0.35 1.26 16 4 O -0.31 -5.63 9.40 -45.85 -0.43 -6.06 16 5 C 0.48 6.89 7.26 36.01 0.26 7.15 16 6 O -0.50 -7.17 14.68 -18.75 -0.28 -7.45 16 7 C -0.12 -1.34 3.44 -91.78 -0.32 -1.65 16 8 H 0.15 1.30 8.14 -51.93 -0.42 0.88 16 9 C -0.12 -0.81 6.53 -25.10 -0.16 -0.97 16 10 C 0.10 0.69 7.34 -3.12 -0.02 0.67 16 11 N -0.62 -6.49 3.33 -180.29 -0.60 -7.09 16 12 C 0.09 0.79 11.14 59.85 0.67 1.46 16 13 C 0.52 7.29 7.30 -10.86 -0.08 7.21 16 14 O -0.49 -9.25 17.35 5.56 0.10 -9.16 16 15 C 0.51 11.44 7.03 -10.98 -0.08 11.36 16 16 O -0.51 -14.20 16.08 -13.94 -0.22 -14.42 16 17 N -0.60 -13.09 2.86 -182.95 -0.52 -13.61 16 18 C 0.07 1.09 9.80 59.85 0.59 1.67 16 19 C 0.25 6.58 5.18 -5.19 -0.03 6.56 16 20 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 24 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.26 5.46 -51.93 -0.28 0.97 16 31 H 0.11 0.75 6.92 -51.93 -0.36 0.39 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.89 7.53 -51.94 -0.39 0.49 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 40 H 0.06 0.85 4.31 -51.93 -0.22 0.63 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -38.71 362.84 -6.26 -44.97 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.18 Total: -2.24 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 0.69 Total: 18.71 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.39 Total: -46.84 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.83 Total: -37.09 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.71 -6.26 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772510519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.856 kcal (2) G-P(sol) polarization free energy of solvation -38.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds