Wall clock time and date at job start Fri Apr 10 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47182 * 2 1 4 4 O 1.45196 * 109.47508 * 239.99509 * 2 1 3 5 5 C 1.34230 * 116.99979 * 89.99634 * 4 2 1 6 6 O 1.20824 * 120.00009 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00018 * 180.02562 * 5 4 2 8 8 H 1.09001 * 110.43705 * 302.54692 * 7 5 4 9 9 C 1.54625 * 110.48444 * 180.02562 * 7 5 4 10 10 C 1.54488 * 101.76719 * 216.52516 * 9 7 5 11 11 N 1.46766 * 105.46523 * 25.41702 * 10 9 7 12 12 C 1.46503 * 124.34218 * 162.98388 * 11 10 9 13 13 C 1.34412 * 111.30382 * 342.98278 * 11 10 9 14 14 O 1.21290 * 124.93965 * 180.44331 * 13 11 10 15 15 C 1.50702 * 109.47273 * 119.99532 * 2 1 3 16 16 O 1.21282 * 119.99793 * 106.65389 * 15 2 1 17 17 N 1.34782 * 119.99930 * 286.66320 * 15 2 1 18 18 C 1.46495 * 119.99676 * 5.11354 * 17 15 2 19 19 C 1.46495 * 119.99875 * 185.11961 * 17 15 2 20 20 C 1.50699 * 109.46735 * 269.99723 * 19 17 15 21 21 H 1.08000 * 120.00684 * 359.97438 * 20 19 17 22 22 C 1.37887 * 119.99708 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00141 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99651 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46862 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.47355 * 299.99473 * 24 22 20 27 27 H 1.48502 * 109.47564 * 59.99978 * 24 22 20 28 28 H 1.09002 * 109.46965 * 170.07209 * 1 2 3 29 29 H 1.09000 * 109.47264 * 290.07219 * 1 2 3 30 30 H 1.09000 * 109.47054 * 50.07302 * 1 2 3 31 31 H 1.09000 * 110.97687 * 334.64409 * 9 7 5 32 32 H 1.08998 * 110.97065 * 98.40958 * 9 7 5 33 33 H 1.08999 * 110.24330 * 144.41559 * 10 9 7 34 34 H 1.08999 * 110.24410 * 266.42418 * 10 9 7 35 35 H 1.09007 * 109.46775 * 90.00333 * 12 11 10 36 36 H 1.09002 * 109.46850 * 209.99702 * 12 11 10 37 37 H 1.08995 * 109.47381 * 330.00430 * 12 11 10 38 38 H 1.09000 * 109.47075 * 265.08338 * 18 17 15 39 39 H 1.08999 * 109.47591 * 25.08718 * 18 17 15 40 40 H 1.09001 * 109.47086 * 145.08812 * 18 17 15 41 41 H 1.08996 * 109.47126 * 149.99454 * 19 17 15 42 42 H 1.09003 * 109.47634 * 29.99342 * 19 17 15 43 43 H 0.97001 * 120.00280 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9981 1.2517 -2.2504 7 6 2.7184 -0.5775 -3.5494 8 1 3.6663 -1.0849 -3.3705 9 6 2.8739 0.4808 -4.6660 10 6 2.4426 -0.3159 -5.9174 11 7 1.5531 -1.3726 -5.4213 12 6 0.6328 -2.1411 -6.2632 13 6 1.6912 -1.5446 -4.0954 14 8 1.0814 -2.3574 -3.4331 15 6 2.0324 -0.7103 1.2305 16 8 2.5183 -1.8175 1.1357 17 7 1.9415 -0.1152 2.4365 18 6 1.2543 1.1718 2.5681 19 6 2.5299 -0.7555 3.6154 20 6 1.5072 -1.6537 4.2622 21 1 0.5177 -1.7387 3.8379 22 6 1.8344 -2.3661 5.3965 23 7 3.0391 -2.2622 5.9136 24 14 0.5665 -3.4788 6.1986 25 1 1.1626 -4.1270 7.3943 26 1 -0.6111 -2.6724 6.6089 27 1 0.1397 -4.5213 5.2309 28 1 -0.3633 -1.0123 -0.1772 29 1 -0.3634 0.3527 0.9652 30 1 -0.3633 0.6596 -0.7881 31 1 2.2102 1.3284 -4.4954 32 1 3.9097 0.8092 -4.7507 33 1 1.9078 0.3324 -6.6114 34 1 3.3138 -0.7541 -6.4043 35 1 1.1404 -3.0296 -6.6391 36 1 -0.2346 -2.4399 -5.6745 37 1 0.3082 -1.5259 -7.1022 38 1 1.9833 1.9803 2.5124 39 1 0.5288 1.2806 1.7620 40 1 0.7395 1.2123 3.5281 41 1 2.8430 0.0094 4.3259 42 1 3.3944 -1.3473 3.3141 43 1 3.2695 -2.7637 6.7113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772510522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:48 Heat of formation + Delta-G solvation = -132.145372 kcal Electronic energy + Delta-G solvation = -26611.172316 eV Core-core repulsion = 22657.721947 eV Total energy + Delta-G solvation = -3953.450369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38662 -40.09449 -38.82730 -36.90193 -36.28116 -34.85308 -33.37397 -32.80016 -31.54310 -28.62782 -27.66186 -27.17717 -26.14008 -24.53707 -23.42648 -22.17869 -21.06503 -19.86237 -18.84076 -18.15441 -17.27904 -17.01973 -16.51285 -16.44711 -15.95751 -15.71264 -15.38755 -14.90721 -14.53651 -14.29309 -14.12003 -13.93584 -13.48892 -13.35185 -13.12716 -12.88580 -12.74776 -12.63744 -12.47448 -12.24873 -12.07232 -12.03104 -11.60327 -11.52129 -11.29313 -11.15809 -10.87106 -10.71806 -10.67090 -10.51021 -10.12907 -10.09478 -9.62886 -9.12775 -8.84848 -8.40946 -7.68118 -6.02138 -4.06671 1.84707 2.14264 2.49215 2.73888 3.29187 3.35259 3.39210 3.44214 3.77638 3.82146 4.00699 4.43153 4.45493 4.47747 4.72751 4.82819 4.88536 4.90455 5.02288 5.06843 5.12871 5.15738 5.32464 5.34635 5.37288 5.47176 5.58050 5.69888 5.77816 5.91330 6.07122 6.12678 6.30467 6.39676 6.63222 7.01710 7.41337 7.49598 7.62852 7.80366 7.93884 8.23971 8.33492 8.89187 9.03756 9.58064 11.06092 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.003030 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.143983 B = 9238.481526 C = 9765.070890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.104 0.896 4 O -0.307 6.307 5 C 0.481 3.519 6 O -0.505 6.505 7 C -0.123 4.123 8 H 0.149 0.851 9 C -0.120 4.120 10 C 0.103 3.897 11 N -0.625 5.625 12 C 0.097 3.903 13 C 0.525 3.475 14 O -0.494 6.494 15 C 0.507 3.493 16 O -0.513 6.513 17 N -0.597 5.597 18 C 0.066 3.934 19 C 0.248 3.752 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.899 3.101 25 H -0.286 1.286 26 H -0.277 1.277 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 9.191 -25.303 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.121 0.879 4 O -0.221 6.221 5 C 0.323 3.677 6 O -0.394 6.394 7 C -0.145 4.145 8 H 0.166 0.834 9 C -0.158 4.158 10 C -0.020 4.020 11 N -0.361 5.361 12 C -0.044 4.044 13 C 0.310 3.690 14 O -0.366 6.366 15 C 0.291 3.709 16 O -0.388 6.388 17 N -0.331 5.331 18 C -0.077 4.077 19 C 0.129 3.871 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.535 5.535 24 Si 0.727 3.273 25 H -0.212 1.212 26 H -0.202 1.202 27 H -0.201 1.201 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.062 8.370 -24.808 26.263 hybrid contribution -0.623 -0.443 0.518 0.924 sum -2.685 7.926 -24.289 25.690 Atomic orbital electron populations 1.22313 0.92280 1.04352 1.03863 1.22706 0.96095 0.97208 0.82812 0.87874 1.86714 1.75514 1.40658 1.19172 1.22699 0.74229 0.85469 0.85301 1.90636 1.48316 1.16214 1.84217 1.21827 1.02211 0.98781 0.91688 0.83377 1.22717 1.05037 0.97330 0.90690 1.22182 0.94025 0.88938 0.96863 1.48077 1.41422 1.38482 1.08136 1.21581 0.92990 0.95405 0.94436 1.20102 0.82844 0.83788 0.82303 1.90862 1.47852 1.36020 1.61866 1.19763 0.80828 0.86548 0.83768 1.90723 1.44149 1.18413 1.85528 1.48070 1.55507 1.21167 1.08385 1.21989 0.96882 0.85469 1.03391 1.19328 0.94501 0.92980 0.80258 1.21392 0.98756 1.26242 1.10165 0.92386 1.24933 0.95569 0.96668 0.96910 1.69918 1.19091 1.42187 1.22283 0.86543 0.81262 0.80918 0.78622 1.21182 1.20249 1.20087 0.90388 0.89007 0.91383 0.87850 0.87932 0.89655 0.90425 0.92291 0.90449 0.90809 0.93371 0.91446 0.90400 0.94619 0.93851 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.09 37.16 0.34 -2.29 16 2 C 0.07 1.25 2.16 -27.88 -0.06 1.19 16 3 H 0.10 1.64 6.74 -51.93 -0.35 1.29 16 4 O -0.31 -5.66 9.19 -46.19 -0.42 -6.09 16 5 C 0.48 7.14 7.19 36.01 0.26 7.40 16 6 O -0.51 -7.64 14.71 -18.75 -0.28 -7.92 16 7 C -0.12 -1.33 3.44 -91.78 -0.32 -1.65 16 8 H 0.15 1.34 8.14 -51.93 -0.42 0.92 16 9 C -0.12 -0.79 6.48 -25.10 -0.16 -0.96 16 10 C 0.10 0.52 7.35 -3.12 -0.02 0.50 16 11 N -0.62 -5.46 3.33 -180.28 -0.60 -6.06 16 12 C 0.10 0.65 10.96 59.85 0.66 1.30 16 13 C 0.52 6.71 7.44 -10.87 -0.08 6.63 16 14 O -0.49 -8.68 17.21 5.54 0.10 -8.58 16 15 C 0.51 11.43 7.00 -10.98 -0.08 11.36 16 16 O -0.51 -14.05 16.19 -13.72 -0.22 -14.28 16 17 N -0.60 -13.15 2.86 -182.96 -0.52 -13.67 16 18 C 0.07 1.08 9.86 59.84 0.59 1.67 16 19 C 0.25 6.63 5.15 -5.20 -0.03 6.60 16 20 C -0.53 -15.25 9.39 -34.44 -0.32 -15.58 16 21 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 24 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.29 5.50 -51.93 -0.29 1.01 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 0.80 7.00 -51.93 -0.36 0.43 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.91 4.11 -51.93 -0.21 0.70 16 40 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 41 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 42 H 0.04 1.30 7.50 -51.93 -0.39 0.91 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -38.82 362.94 -6.29 -45.11 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.20 Total: -2.89 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 0.68 Total: 17.87 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.39 Total: -45.99 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.83 Total: -36.87 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.82 -6.29 -45.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772510522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.032 kcal (2) G-P(sol) polarization free energy of solvation -38.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds