Wall clock time and date at job start Fri Apr 10 2020 18:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47182 * 2 1 4 4 O 1.45196 * 109.47508 * 239.99509 * 2 1 3 5 5 C 1.34230 * 116.99979 * 89.99634 * 4 2 1 6 6 O 1.20824 * 120.00009 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00018 * 180.02562 * 5 4 2 8 8 H 1.09001 * 110.43705 * 302.54692 * 7 5 4 9 9 C 1.54625 * 110.48444 * 180.02562 * 7 5 4 10 10 C 1.54488 * 101.76719 * 216.52516 * 9 7 5 11 11 N 1.46766 * 105.46523 * 25.41702 * 10 9 7 12 12 C 1.46503 * 124.34218 * 162.98388 * 11 10 9 13 13 C 1.34412 * 111.30382 * 342.98278 * 11 10 9 14 14 O 1.21290 * 124.93965 * 180.44331 * 13 11 10 15 15 C 1.50702 * 109.47273 * 119.99532 * 2 1 3 16 16 O 1.21282 * 119.99793 * 106.65389 * 15 2 1 17 17 N 1.34782 * 119.99930 * 286.66320 * 15 2 1 18 18 C 1.46495 * 119.99676 * 5.11354 * 17 15 2 19 19 C 1.46495 * 119.99875 * 185.11961 * 17 15 2 20 20 C 1.50699 * 109.46735 * 269.99723 * 19 17 15 21 21 H 1.08000 * 120.00684 * 359.97438 * 20 19 17 22 22 C 1.37887 * 119.99708 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00141 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99651 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46862 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.47355 * 299.99473 * 24 22 20 27 27 H 1.48502 * 109.47564 * 59.99978 * 24 22 20 28 28 H 1.09002 * 109.46965 * 170.07209 * 1 2 3 29 29 H 1.09000 * 109.47264 * 290.07219 * 1 2 3 30 30 H 1.09000 * 109.47054 * 50.07302 * 1 2 3 31 31 H 1.09000 * 110.97687 * 334.64409 * 9 7 5 32 32 H 1.08998 * 110.97065 * 98.40958 * 9 7 5 33 33 H 1.08999 * 110.24330 * 144.41559 * 10 9 7 34 34 H 1.08999 * 110.24410 * 266.42418 * 10 9 7 35 35 H 1.09007 * 109.46775 * 90.00333 * 12 11 10 36 36 H 1.09002 * 109.46850 * 209.99702 * 12 11 10 37 37 H 1.08995 * 109.47381 * 330.00430 * 12 11 10 38 38 H 1.09000 * 109.47075 * 265.08338 * 18 17 15 39 39 H 1.08999 * 109.47591 * 25.08718 * 18 17 15 40 40 H 1.09001 * 109.47086 * 145.08812 * 18 17 15 41 41 H 1.08996 * 109.47126 * 149.99454 * 19 17 15 42 42 H 1.09003 * 109.47634 * 29.99342 * 19 17 15 43 43 H 0.97001 * 120.00280 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9981 1.2517 -2.2504 7 6 2.7184 -0.5775 -3.5494 8 1 3.6663 -1.0849 -3.3705 9 6 2.8739 0.4808 -4.6660 10 6 2.4426 -0.3159 -5.9174 11 7 1.5531 -1.3726 -5.4213 12 6 0.6328 -2.1411 -6.2632 13 6 1.6912 -1.5446 -4.0954 14 8 1.0814 -2.3574 -3.4331 15 6 2.0324 -0.7103 1.2305 16 8 2.5183 -1.8175 1.1357 17 7 1.9415 -0.1152 2.4365 18 6 1.2543 1.1718 2.5681 19 6 2.5299 -0.7555 3.6154 20 6 1.5072 -1.6537 4.2622 21 1 0.5177 -1.7387 3.8379 22 6 1.8344 -2.3661 5.3965 23 7 3.0391 -2.2622 5.9136 24 14 0.5665 -3.4788 6.1986 25 1 1.1626 -4.1270 7.3943 26 1 -0.6111 -2.6724 6.6089 27 1 0.1397 -4.5213 5.2309 28 1 -0.3633 -1.0123 -0.1772 29 1 -0.3634 0.3527 0.9652 30 1 -0.3633 0.6596 -0.7881 31 1 2.2102 1.3284 -4.4954 32 1 3.9097 0.8092 -4.7507 33 1 1.9078 0.3324 -6.6114 34 1 3.3138 -0.7541 -6.4043 35 1 1.1404 -3.0296 -6.6391 36 1 -0.2346 -2.4399 -5.6745 37 1 0.3082 -1.5259 -7.1022 38 1 1.9833 1.9803 2.5124 39 1 0.5288 1.2806 1.7620 40 1 0.7395 1.2123 3.5281 41 1 2.8430 0.0094 4.3259 42 1 3.3944 -1.3473 3.3141 43 1 3.2695 -2.7637 6.7113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772510522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:47 Heat of formation + Delta-G solvation = -159.731367 kcal Electronic energy + Delta-G solvation = -26612.368534 eV Core-core repulsion = 22657.721947 eV Total energy + Delta-G solvation = -3954.646587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.41966 -41.29129 -40.37078 -38.01674 -37.37984 -36.72517 -34.92236 -34.08584 -33.03079 -29.71674 -29.25725 -27.82820 -27.69284 -26.05589 -24.88913 -23.46419 -22.00725 -20.82270 -20.50410 -19.23189 -18.71491 -18.29521 -18.11116 -17.64620 -17.30761 -17.01492 -16.74056 -16.31044 -16.14997 -15.73706 -14.99116 -14.88377 -14.78711 -14.57695 -14.31564 -14.12072 -13.83877 -13.72334 -13.62781 -13.49217 -13.38565 -13.22186 -13.07120 -12.90446 -12.79120 -12.62724 -12.40368 -12.20283 -12.08815 -11.96325 -11.86900 -11.73940 -11.05834 -10.66592 -10.64726 -9.79815 -9.54831 -8.24675 -6.38977 0.77015 1.04325 1.35286 1.40460 1.46722 1.47846 1.57669 1.98895 2.28983 2.41067 3.05264 3.07625 3.19108 3.34965 3.56465 3.71793 3.77573 3.88391 4.02005 4.17837 4.35141 4.37782 4.46036 4.53842 4.62329 4.64443 4.70570 4.82809 4.86602 4.91561 4.94400 5.06175 5.09099 5.15806 5.23475 5.46691 5.49835 5.76103 5.90558 6.02097 6.40024 6.58245 6.68952 6.94771 7.17955 7.34107 8.82757 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.003030 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.143983 B = 9238.481526 C = 9765.070890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.080 3.920 3 H 0.128 0.872 4 O -0.338 6.338 5 C 0.476 3.524 6 O -0.509 6.509 7 C -0.125 4.125 8 H 0.162 0.838 9 C -0.110 4.110 10 C 0.102 3.898 11 N -0.617 5.617 12 C 0.090 3.910 13 C 0.511 3.489 14 O -0.559 6.559 15 C 0.498 3.502 16 O -0.577 6.577 17 N -0.600 5.600 18 C 0.059 3.941 19 C 0.261 3.739 20 C -0.546 4.546 21 H 0.053 0.947 22 C 0.009 3.991 23 N -0.927 5.927 24 Si 0.967 3.033 25 H -0.276 1.276 26 H -0.258 1.258 27 H -0.281 1.281 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.035 0.965 42 H -0.002 1.002 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 11.169 -27.514 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.145 0.855 4 O -0.253 6.253 5 C 0.319 3.681 6 O -0.397 6.397 7 C -0.147 4.147 8 H 0.180 0.820 9 C -0.147 4.147 10 C -0.019 4.019 11 N -0.351 5.351 12 C -0.050 4.050 13 C 0.297 3.703 14 O -0.438 6.438 15 C 0.285 3.715 16 O -0.456 6.456 17 N -0.332 5.332 18 C -0.082 4.082 19 C 0.140 3.860 20 C -0.584 4.584 21 H 0.071 0.929 22 C -0.190 4.190 23 N -0.567 5.567 24 Si 0.791 3.209 25 H -0.201 1.201 26 H -0.182 1.182 27 H -0.207 1.207 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.016 0.984 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.924 10.445 -27.083 29.174 hybrid contribution -0.302 -1.000 1.103 1.519 sum -3.227 9.445 -25.980 27.831 Atomic orbital electron populations 1.22303 0.90321 1.03830 1.05609 1.22582 0.97322 0.97039 0.80901 0.85451 1.86734 1.76199 1.42238 1.20143 1.23453 0.73766 0.85552 0.85349 1.90611 1.48530 1.16257 1.84298 1.22085 1.01888 0.99920 0.90806 0.82033 1.22840 1.06866 0.95813 0.89185 1.22537 0.94714 0.88212 0.96466 1.48304 1.41200 1.38560 1.06992 1.21780 0.92073 0.96529 0.94649 1.20514 0.82730 0.83470 0.83592 1.90821 1.50485 1.38816 1.63632 1.20662 0.79637 0.86027 0.85192 1.90678 1.46957 1.21348 1.86621 1.48068 1.55264 1.22769 1.07123 1.22331 0.97970 0.83195 1.04706 1.18844 0.92990 0.92487 0.81686 1.21664 0.98917 1.27178 1.10678 0.92850 1.25848 0.97691 0.98018 0.97478 1.70031 1.20869 1.43023 1.22759 0.85476 0.79135 0.78714 0.77542 1.20098 1.18207 1.20679 0.92490 0.87524 0.88799 0.88705 0.84861 0.86677 0.87593 0.91390 0.92709 0.87155 0.90535 0.88318 0.90395 0.94741 0.98414 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.09 71.98 0.65 -4.23 16 2 C 0.08 2.83 2.16 29.85 0.06 2.90 16 3 H 0.13 3.84 6.74 -2.39 -0.02 3.83 16 4 O -0.34 -12.79 9.19 -44.79 -0.41 -13.20 16 5 C 0.48 13.90 7.19 71.24 0.51 14.41 16 6 O -0.51 -14.53 14.71 21.97 0.32 -14.21 16 7 C -0.12 -2.57 3.44 -11.55 -0.04 -2.61 16 8 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 9 C -0.11 -1.09 6.48 31.65 0.21 -0.88 16 10 C 0.10 0.62 7.35 86.83 0.64 1.25 16 11 N -0.62 -9.55 3.33 -842.87 -2.81 -12.36 16 12 C 0.09 1.05 10.96 127.77 1.40 2.45 16 13 C 0.51 13.04 7.44 87.90 0.65 13.70 16 14 O -0.56 -20.79 17.21 -3.05 -0.05 -20.84 16 15 C 0.50 23.22 7.00 87.66 0.61 23.83 16 16 O -0.58 -33.56 16.19 15.40 0.25 -33.31 16 17 N -0.60 -26.88 2.86 -851.15 -2.43 -29.31 16 18 C 0.06 1.83 9.86 127.77 1.26 3.09 16 19 C 0.26 14.51 5.15 85.63 0.44 14.96 16 20 C -0.55 -32.46 9.39 25.60 0.24 -32.22 16 21 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 22 C 0.01 0.52 5.46 84.66 0.46 0.98 16 23 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 24 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.11 2.80 5.50 -2.39 -0.01 2.78 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 1.16 7.00 -2.39 -0.02 1.15 16 32 H 0.13 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.05 0.90 7.93 -2.39 -0.02 0.88 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.10 2.42 4.11 -2.39 -0.01 2.41 16 40 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 41 H 0.03 1.90 8.07 -2.39 -0.02 1.88 16 42 H 0.00 -0.15 7.50 -2.39 -0.02 -0.16 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -91.27 362.94 5.31 -85.97 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.02 Total: 8.26 kcal Atomic # 6 Polarization: 30.51 SS G_CDS: 7.11 Total: 37.62 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.96 Total: -98.48 kcal Atomic # 8 Polarization: -81.68 SS G_CDS: 0.11 Total: -81.57 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -91.27 5.31 -85.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772510522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.762 kcal (2) G-P(sol) polarization free energy of solvation -91.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds