Wall clock time and date at job start Fri Apr 10 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47332 * 2 1 4 4 O 1.45208 * 109.46897 * 119.99518 * 2 1 3 5 5 C 1.34223 * 117.00109 * 270.00331 * 4 2 1 6 6 O 1.20825 * 120.00195 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00003 * 180.02562 * 5 4 2 8 8 H 1.09004 * 110.43091 * 57.45995 * 7 5 4 9 9 C 1.54626 * 110.48613 * 179.97438 * 7 5 4 10 10 C 1.54486 * 101.76362 * 143.60911 * 9 7 5 11 11 N 1.46762 * 105.54916 * 334.54217 * 10 9 7 12 12 C 1.46494 * 124.34888 * 197.07555 * 11 10 9 13 13 C 1.34627 * 111.17940 * 17.05596 * 11 10 9 14 14 O 1.21286 * 124.90649 * 179.58044 * 13 11 10 15 15 C 1.50693 * 109.47443 * 239.99668 * 2 1 3 16 16 O 1.21286 * 120.00169 * 248.57284 * 15 2 1 17 17 N 1.34779 * 119.99938 * 68.56535 * 15 2 1 18 18 C 1.46497 * 119.99835 * 4.58584 * 17 15 2 19 19 C 1.46500 * 119.99956 * 184.58355 * 17 15 2 20 20 C 1.50703 * 109.47037 * 89.99960 * 19 17 15 21 21 H 1.07999 * 119.99854 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00230 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47117 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47014 * 120.00625 * 24 22 20 27 27 H 1.48504 * 109.46949 * 240.00075 * 24 22 20 28 28 H 1.08997 * 109.46838 * 67.15915 * 1 2 3 29 29 H 1.09002 * 109.46762 * 187.15455 * 1 2 3 30 30 H 1.08996 * 109.47503 * 307.15058 * 1 2 3 31 31 H 1.09000 * 110.97149 * 25.49674 * 9 7 5 32 32 H 1.09000 * 110.97594 * 261.72748 * 9 7 5 33 33 H 1.09002 * 110.24367 * 93.58561 * 10 9 7 34 34 H 1.08995 * 110.24359 * 215.49798 * 10 9 7 35 35 H 1.09000 * 109.47152 * 90.00066 * 12 11 10 36 36 H 1.09009 * 109.47194 * 209.99651 * 12 11 10 37 37 H 1.08992 * 109.47552 * 329.99930 * 12 11 10 38 38 H 1.09004 * 109.46959 * 86.12326 * 18 17 15 39 39 H 1.08997 * 109.47058 * 206.11644 * 18 17 15 40 40 H 1.08997 * 109.47171 * 326.11922 * 18 17 15 41 41 H 1.08997 * 109.47072 * 210.00028 * 19 17 15 42 42 H 1.08997 * 109.47309 * 330.00548 * 19 17 15 43 43 H 0.96999 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2170 0.0641 2.2812 6 8 1.9981 1.2519 2.2504 7 6 2.7192 -0.5769 3.5493 8 1 3.6674 -1.0836 3.3699 9 6 2.8744 0.4815 4.6659 10 6 2.4476 -0.3166 5.9178 11 7 1.5585 -1.3753 5.4253 12 6 0.6416 -2.1443 6.2703 13 6 1.6955 -1.5466 4.0970 14 8 1.0859 -2.3603 3.4357 15 6 2.0324 -0.7104 -1.2303 16 8 2.5963 -1.7791 -1.1258 17 7 1.8549 -0.1583 -2.4470 18 6 1.2645 1.1771 -2.5663 19 6 2.2525 -0.8936 -3.6501 20 6 1.0935 -1.7251 -4.1366 21 1 0.1546 -1.7072 -3.6031 22 6 1.2315 -2.5078 -5.2632 23 7 2.3747 -2.5292 -5.9130 24 14 -0.2053 -3.5379 -5.8665 25 1 -1.3697 -3.3383 -4.9669 26 1 -0.5683 -3.1217 -7.2451 27 1 0.1799 -4.9721 -5.8678 28 1 -0.3633 0.3989 -0.9471 29 1 -0.3633 -1.0197 0.1280 30 1 -0.3634 0.6206 0.8190 31 1 2.2083 1.3275 4.4968 32 1 3.9097 0.8124 4.7485 33 1 3.3208 -0.7527 6.4030 34 1 1.9140 0.3306 6.6138 35 1 -0.3230 -1.6386 6.3137 36 1 0.5104 -3.1416 5.8503 37 1 1.0551 -2.2249 7.2755 38 1 2.0472 1.9300 -2.4733 39 1 0.7801 1.2747 -3.5378 40 1 0.5270 1.3201 -1.7765 41 1 2.5447 -0.1877 -4.4274 42 1 3.0942 -1.5454 -3.4161 43 1 2.4719 -3.0801 -6.7055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772510524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:51 Heat of formation + Delta-G solvation = -133.351101 kcal Electronic energy + Delta-G solvation = -26633.955792 eV Core-core repulsion = 22680.453139 eV Total energy + Delta-G solvation = -3953.502653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.36962 -40.07952 -38.82594 -36.89642 -36.27397 -34.86688 -33.36476 -32.80004 -31.52176 -28.61679 -27.68222 -27.16178 -26.11493 -24.55195 -23.43085 -22.17472 -21.06444 -19.85475 -18.82398 -18.14153 -17.27722 -17.01872 -16.54019 -16.42130 -15.91429 -15.72293 -15.36185 -14.89462 -14.61744 -14.27292 -14.13588 -13.92639 -13.50185 -13.37183 -13.10330 -12.89873 -12.71978 -12.58560 -12.43688 -12.24082 -12.09826 -12.03938 -11.60014 -11.53376 -11.28553 -11.17469 -10.86211 -10.70962 -10.66274 -10.53329 -10.14453 -10.08923 -9.60472 -9.11139 -8.86181 -8.42921 -7.68116 -6.03708 -4.08604 1.84997 2.14949 2.50271 2.74298 3.28694 3.31689 3.39716 3.44542 3.78321 3.82876 4.01136 4.42969 4.45544 4.47355 4.72964 4.84338 4.88761 4.90098 5.02953 5.07844 5.14312 5.16041 5.31087 5.35092 5.37826 5.49599 5.58499 5.73423 5.80646 5.89293 6.08225 6.12269 6.32583 6.41215 6.63592 7.01527 7.42988 7.49805 7.63393 7.80805 7.92816 8.22591 8.32934 8.87937 9.03072 9.56567 11.04488 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.003094 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.977791 B = 9047.455350 C = 9648.779949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.307 6.307 5 C 0.481 3.519 6 O -0.505 6.505 7 C -0.122 4.122 8 H 0.149 0.851 9 C -0.120 4.120 10 C 0.103 3.897 11 N -0.626 5.626 12 C 0.098 3.902 13 C 0.525 3.475 14 O -0.493 6.493 15 C 0.509 3.491 16 O -0.518 6.518 17 N -0.597 5.597 18 C 0.067 3.933 19 C 0.246 3.754 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.282 1.282 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.411 9.545 25.086 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 H 0.121 0.879 4 O -0.220 6.220 5 C 0.323 3.677 6 O -0.394 6.394 7 C -0.145 4.145 8 H 0.166 0.834 9 C -0.157 4.157 10 C -0.020 4.020 11 N -0.362 5.362 12 C -0.044 4.044 13 C 0.309 3.691 14 O -0.365 6.365 15 C 0.294 3.706 16 O -0.393 6.393 17 N -0.330 5.330 18 C -0.076 4.076 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.727 3.273 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.208 1.208 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.486 8.728 24.593 26.101 hybrid contribution -0.748 -0.402 -0.425 0.949 sum -1.234 8.326 24.169 25.592 Atomic orbital electron populations 1.22284 0.92166 1.04420 1.03795 1.22691 0.96123 0.97199 0.82778 0.87901 1.86713 1.75495 1.40659 1.19170 1.22688 0.74226 0.85466 0.85305 1.90636 1.48338 1.16219 1.84221 1.21812 1.02215 0.98755 0.91696 0.83382 1.22710 1.05036 0.97312 0.90681 1.22165 0.93949 0.89008 0.96907 1.48121 1.41668 1.38345 1.08101 1.21569 0.92283 0.96419 0.94112 1.20167 0.82732 0.83823 0.82329 1.90861 1.47833 1.35977 1.61852 1.19744 0.80941 0.86161 0.83796 1.90710 1.41519 1.21328 1.85719 1.48054 1.60913 1.17265 1.06808 1.21971 0.97852 0.84210 1.03591 1.19365 0.96813 0.91646 0.79479 1.21480 0.98467 1.26227 1.10504 0.92271 1.24939 0.96113 0.96598 0.96452 1.69943 1.24075 1.40290 1.19016 0.86425 0.82359 0.80207 0.78345 1.19743 1.20970 1.20823 0.88960 0.90431 0.91464 0.87863 0.87933 0.90443 0.89686 0.92393 0.90363 0.90778 0.93458 0.90142 0.91698 0.94626 0.93585 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.14 37.16 0.34 -2.33 16 2 C 0.07 1.27 2.16 -27.89 -0.06 1.21 16 3 H 0.10 1.64 6.73 -51.93 -0.35 1.29 16 4 O -0.31 -5.69 9.18 -46.20 -0.42 -6.12 16 5 C 0.48 7.18 7.20 36.01 0.26 7.44 16 6 O -0.51 -7.68 14.71 -18.75 -0.28 -7.96 16 7 C -0.12 -1.33 3.43 -91.79 -0.31 -1.65 16 8 H 0.15 1.34 8.14 -51.93 -0.42 0.92 16 9 C -0.12 -0.80 6.48 -25.10 -0.16 -0.96 16 10 C 0.10 0.53 7.34 -3.12 -0.02 0.50 16 11 N -0.63 -5.52 3.34 -180.23 -0.60 -6.12 16 12 C 0.10 0.66 10.97 59.84 0.66 1.31 16 13 C 0.52 6.76 7.45 -10.77 -0.08 6.68 16 14 O -0.49 -8.73 17.22 5.55 0.10 -8.63 16 15 C 0.51 11.50 7.03 -10.99 -0.08 11.42 16 16 O -0.52 -14.10 16.08 -13.95 -0.22 -14.33 16 17 N -0.60 -13.12 2.86 -182.96 -0.52 -13.64 16 18 C 0.07 1.09 9.80 59.85 0.59 1.68 16 19 C 0.25 6.55 5.18 -5.19 -0.03 6.52 16 20 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 21 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 24 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.09 1.34 5.46 -51.93 -0.28 1.06 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.80 7.01 -51.93 -0.36 0.44 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.63 7.93 -51.92 -0.41 0.22 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 40 H 0.06 0.89 4.31 -51.93 -0.22 0.67 16 41 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 42 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -38.67 362.86 -6.29 -44.97 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.20 Total: -2.68 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 0.68 Total: 17.99 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.39 Total: -45.89 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.83 Total: -37.04 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.67 -6.29 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772510524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.385 kcal (2) G-P(sol) polarization free energy of solvation -38.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds