Wall clock time and date at job start Fri Apr 10 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47332 * 2 1 4 4 O 1.45208 * 109.46897 * 119.99518 * 2 1 3 5 5 C 1.34223 * 117.00109 * 270.00331 * 4 2 1 6 6 O 1.20825 * 120.00195 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00003 * 180.02562 * 5 4 2 8 8 H 1.09004 * 110.43091 * 57.45995 * 7 5 4 9 9 C 1.54626 * 110.48613 * 179.97438 * 7 5 4 10 10 C 1.54486 * 101.76362 * 143.60911 * 9 7 5 11 11 N 1.46762 * 105.54916 * 334.54217 * 10 9 7 12 12 C 1.46494 * 124.34888 * 197.07555 * 11 10 9 13 13 C 1.34627 * 111.17940 * 17.05596 * 11 10 9 14 14 O 1.21286 * 124.90649 * 179.58044 * 13 11 10 15 15 C 1.50693 * 109.47443 * 239.99668 * 2 1 3 16 16 O 1.21286 * 120.00169 * 248.57284 * 15 2 1 17 17 N 1.34779 * 119.99938 * 68.56535 * 15 2 1 18 18 C 1.46497 * 119.99835 * 4.58584 * 17 15 2 19 19 C 1.46500 * 119.99956 * 184.58355 * 17 15 2 20 20 C 1.50703 * 109.47037 * 89.99960 * 19 17 15 21 21 H 1.07999 * 119.99854 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00230 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47117 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47014 * 120.00625 * 24 22 20 27 27 H 1.48504 * 109.46949 * 240.00075 * 24 22 20 28 28 H 1.08997 * 109.46838 * 67.15915 * 1 2 3 29 29 H 1.09002 * 109.46762 * 187.15455 * 1 2 3 30 30 H 1.08996 * 109.47503 * 307.15058 * 1 2 3 31 31 H 1.09000 * 110.97149 * 25.49674 * 9 7 5 32 32 H 1.09000 * 110.97594 * 261.72748 * 9 7 5 33 33 H 1.09002 * 110.24367 * 93.58561 * 10 9 7 34 34 H 1.08995 * 110.24359 * 215.49798 * 10 9 7 35 35 H 1.09000 * 109.47152 * 90.00066 * 12 11 10 36 36 H 1.09009 * 109.47194 * 209.99651 * 12 11 10 37 37 H 1.08992 * 109.47552 * 329.99930 * 12 11 10 38 38 H 1.09004 * 109.46959 * 86.12326 * 18 17 15 39 39 H 1.08997 * 109.47058 * 206.11644 * 18 17 15 40 40 H 1.08997 * 109.47171 * 326.11922 * 18 17 15 41 41 H 1.08997 * 109.47072 * 210.00028 * 19 17 15 42 42 H 1.08997 * 109.47309 * 330.00548 * 19 17 15 43 43 H 0.96999 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2170 0.0641 2.2812 6 8 1.9981 1.2519 2.2504 7 6 2.7192 -0.5769 3.5493 8 1 3.6674 -1.0836 3.3699 9 6 2.8744 0.4815 4.6659 10 6 2.4476 -0.3166 5.9178 11 7 1.5585 -1.3753 5.4253 12 6 0.6416 -2.1443 6.2703 13 6 1.6955 -1.5466 4.0970 14 8 1.0859 -2.3603 3.4357 15 6 2.0324 -0.7104 -1.2303 16 8 2.5963 -1.7791 -1.1258 17 7 1.8549 -0.1583 -2.4470 18 6 1.2645 1.1771 -2.5663 19 6 2.2525 -0.8936 -3.6501 20 6 1.0935 -1.7251 -4.1366 21 1 0.1546 -1.7072 -3.6031 22 6 1.2315 -2.5078 -5.2632 23 7 2.3747 -2.5292 -5.9130 24 14 -0.2053 -3.5379 -5.8665 25 1 -1.3697 -3.3383 -4.9669 26 1 -0.5683 -3.1217 -7.2451 27 1 0.1799 -4.9721 -5.8678 28 1 -0.3633 0.3989 -0.9471 29 1 -0.3633 -1.0197 0.1280 30 1 -0.3634 0.6206 0.8190 31 1 2.2083 1.3275 4.4968 32 1 3.9097 0.8124 4.7485 33 1 3.3208 -0.7527 6.4030 34 1 1.9140 0.3306 6.6138 35 1 -0.3230 -1.6386 6.3137 36 1 0.5104 -3.1416 5.8503 37 1 1.0551 -2.2249 7.2755 38 1 2.0472 1.9300 -2.4733 39 1 0.7801 1.2747 -3.5378 40 1 0.5270 1.3201 -1.7765 41 1 2.5447 -0.1877 -4.4274 42 1 3.0942 -1.5454 -3.4161 43 1 2.4719 -3.0801 -6.7055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772510524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:50 Heat of formation + Delta-G solvation = -160.777684 kcal Electronic energy + Delta-G solvation = -26635.145097 eV Core-core repulsion = 22680.453139 eV Total energy + Delta-G solvation = -3954.691959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41153 -41.28121 -40.36807 -38.01588 -37.37828 -36.73456 -34.92036 -34.08224 -33.01422 -29.72806 -29.25679 -27.81612 -27.67389 -26.08142 -24.88960 -23.46440 -22.00929 -20.82263 -20.48809 -19.22326 -18.71601 -18.29781 -18.11838 -17.64204 -17.30179 -16.98963 -16.75882 -16.26598 -16.22746 -15.71683 -15.02752 -14.90081 -14.76203 -14.55756 -14.28186 -14.15106 -13.86013 -13.71843 -13.63711 -13.49286 -13.36114 -13.21063 -13.08046 -12.89558 -12.77122 -12.64996 -12.40795 -12.23203 -12.10124 -11.96547 -11.86905 -11.69314 -11.05881 -10.67205 -10.66431 -9.78665 -9.54276 -8.25221 -6.39852 0.76865 1.05027 1.35257 1.38317 1.47295 1.50510 1.56272 1.98845 2.29228 2.40901 3.04891 3.07839 3.19166 3.35342 3.56675 3.71635 3.76817 3.88467 4.01995 4.19353 4.33341 4.39623 4.46618 4.53317 4.62012 4.63527 4.70795 4.81933 4.86709 4.91596 4.94367 5.07019 5.09246 5.17868 5.23716 5.47162 5.49925 5.76527 5.90529 6.01463 6.40009 6.57998 6.69034 6.94629 7.17280 7.33671 8.82631 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.003094 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.977791 B = 9047.455350 C = 9648.779949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.129 0.871 4 O -0.338 6.338 5 C 0.476 3.524 6 O -0.509 6.509 7 C -0.124 4.124 8 H 0.163 0.837 9 C -0.109 4.109 10 C 0.101 3.899 11 N -0.618 5.618 12 C 0.091 3.909 13 C 0.511 3.489 14 O -0.559 6.559 15 C 0.500 3.500 16 O -0.579 6.579 17 N -0.599 5.599 18 C 0.060 3.940 19 C 0.259 3.741 20 C -0.546 4.546 21 H 0.055 0.945 22 C 0.008 3.992 23 N -0.927 5.927 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.266 1.266 27 H -0.283 1.283 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.034 0.966 42 H -0.001 1.001 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 11.562 27.435 29.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.022 3.978 3 H 0.147 0.853 4 O -0.253 6.253 5 C 0.319 3.681 6 O -0.397 6.397 7 C -0.146 4.146 8 H 0.180 0.820 9 C -0.147 4.147 10 C -0.020 4.020 11 N -0.352 5.352 12 C -0.050 4.050 13 C 0.297 3.703 14 O -0.437 6.437 15 C 0.287 3.713 16 O -0.459 6.459 17 N -0.331 5.331 18 C -0.081 4.081 19 C 0.138 3.862 20 C -0.584 4.584 21 H 0.074 0.926 22 C -0.191 4.191 23 N -0.567 5.567 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.191 1.191 27 H -0.209 1.209 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.312 10.842 27.006 29.131 hybrid contribution -0.434 -0.968 -1.061 1.500 sum -1.746 9.874 25.946 27.816 Atomic orbital electron populations 1.22270 0.90430 1.03670 1.05548 1.22563 0.97160 0.97154 0.80934 0.85348 1.86734 1.76176 1.42240 1.20139 1.23448 0.73761 0.85553 0.85355 1.90611 1.48543 1.16263 1.84302 1.22069 1.01909 0.99874 0.90792 0.81961 1.22834 1.06888 0.95779 0.89167 1.22521 0.94670 0.88261 0.96507 1.48350 1.41421 1.38472 1.06937 1.21765 0.92736 0.95210 0.95278 1.20593 0.82639 0.83492 0.83609 1.90819 1.50513 1.38777 1.63621 1.20629 0.79827 0.85663 0.85216 1.90667 1.44256 1.24194 1.86782 1.48047 1.60644 1.18954 1.05474 1.22316 0.99384 0.81554 1.04866 1.18876 0.94946 0.91253 0.81145 1.21734 0.98729 1.27084 1.10855 0.92639 1.25859 0.98967 0.97678 0.96572 1.70053 1.26058 1.41053 1.19513 0.85351 0.78849 0.78026 0.78482 1.19155 1.19101 1.20865 0.87515 0.92722 0.88979 0.88780 0.84784 0.87452 0.86852 0.91794 0.92493 0.86990 0.90528 0.90066 0.88678 0.94833 0.98254 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.14 71.98 0.66 -4.32 16 2 C 0.08 2.86 2.16 29.85 0.06 2.93 16 3 H 0.13 3.87 6.73 -2.39 -0.02 3.86 16 4 O -0.34 -12.84 9.18 -44.69 -0.41 -13.25 16 5 C 0.48 13.94 7.20 71.24 0.51 14.45 16 6 O -0.51 -14.59 14.71 21.97 0.32 -14.26 16 7 C -0.12 -2.57 3.43 -11.55 -0.04 -2.61 16 8 H 0.16 2.79 8.14 -2.38 -0.02 2.77 16 9 C -0.11 -1.09 6.48 31.65 0.20 -0.88 16 10 C 0.10 0.62 7.34 86.83 0.64 1.26 16 11 N -0.62 -9.65 3.34 -842.61 -2.81 -12.47 16 12 C 0.09 1.07 10.97 127.77 1.40 2.47 16 13 C 0.51 13.11 7.45 87.86 0.65 13.76 16 14 O -0.56 -20.91 17.22 -3.05 -0.05 -20.97 16 15 C 0.50 23.31 7.03 87.65 0.62 23.92 16 16 O -0.58 -33.55 16.08 15.60 0.25 -33.29 16 17 N -0.60 -26.80 2.86 -851.15 -2.43 -29.23 16 18 C 0.06 1.85 9.80 127.77 1.25 3.11 16 19 C 0.26 14.38 5.18 85.63 0.44 14.82 16 20 C -0.55 -32.19 9.39 25.60 0.24 -31.95 16 21 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 22 C 0.01 0.49 5.46 84.65 0.46 0.96 16 23 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 24 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 28 H 0.11 2.90 5.46 -2.39 -0.01 2.88 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.09 1.17 7.01 -2.39 -0.02 1.15 16 32 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.93 7.93 -2.38 -0.02 0.91 16 37 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.08 2.51 8.04 -2.39 -0.02 2.49 16 40 H 0.10 2.35 4.31 -2.39 -0.01 2.34 16 41 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 42 H 0.00 -0.04 7.36 -2.39 -0.02 -0.06 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -90.91 362.86 5.31 -85.60 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.02 Total: 8.64 kcal Atomic # 6 Polarization: 30.81 SS G_CDS: 7.11 Total: 37.92 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -4.96 Total: -98.37 kcal Atomic # 8 Polarization: -81.88 SS G_CDS: 0.11 Total: -81.77 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -90.91 5.31 -85.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772510524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.177 kcal (2) G-P(sol) polarization free energy of solvation -90.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds